<html>
<head>
<meta http-equiv="content-type" content="text/html; charset=UTF-8">
</head>
<body>
<p>Hei,</p>
<p>I just encountered an issue which I can not solve on my own. I
wrote a test program on my development machine, and compilation
works fine, but when trying to compile it on the production
machine compilation fails with</p>
<p><i>[ 25%] Building CXX object
CMakeFiles/test_program.dir/source/core/tester_helper.cpp.o</i><i><br>
</i><i>/share/apps/software/OpenMPI/3.1.3-gcccuda-2019a/bin/mpicxx
-DBOOST_NO_AUTO_PTR -DUSE_CUDA -DUSE_PHYSICS_VARIABLES
-Dtest_program_EXPORTS
-I~/work_directory/full_physics/Test-Controller/library/include
-I~/work_directory/full_physics/physics_variables/include
-I~/local_opt_GCC7/interp2d/include -I/usr/include/eigen3
-I/share/apps/software/Compiler/GCC/8.2.0-2.31.1/GSL/2.5/include
-I/share/apps/software/MPI/intel/2018.3.222-GCC-7.3.0-2.30/impi/2018.3.222/imkl/2018.3.222/compilers_and_libraries_2018.3.222/linux/mkl/include
-isystem ~/local_opt_GCC7/dealii/include -isystem
~/local_opt_GCC7/dealii/include/deal.II/bundled -isystem
/share/apps/software/Core/icc/2019.1.144-GCC-8.2.0-2.31.1/tbb/include
-isystem ~/local_opt_GCC7/boost/include -isystem
~/local_opt_GCC7/petsc/include -isystem
~/local_opt_GCC7/trilinos/include -isystem
~/local_opt_GCC7/arrayfire/include -isystem
/share/apps/software/imkl/2019.5.281-iimpi-2019b/mkl/include
-isystem ~/local_opt_GCC7/suitesparse/include -isystem
/share/apps/software/MPI/GCC-CUDA/8.2.0-2.31.1-10.1.105/OpenMPI/3.1.3/HDF5/1.10.5/include
-isystem
/share/apps/software/Compiler/GCCcore/8.2.0/zlib/1.2.11/include
-isystem
/share/apps/software/Compiler/GCCcore/8.2.0/Szip/2.1.1/include
-isystem
/share/apps/software/Compiler/GCC/8.2.0-2.31.1/CUDA/10.1.105/include
-isystem
/share/apps/software/Compiler/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/include
-isystem ~/local_opt_GCC7/adol-c/include -isystem
~/local_opt_GCC7/p4est/include -isystem
~/local_opt_GCC7/slepc/include -isystem
~/local_opt_GCC7/armadillo/include -isystem
/share/apps/software/MPI/GCC-CUDA/8.2.0-2.31.1-10.1.105/OpenMPI/3.1.3/FFTW/3.3.8/include
-march=native -fopenmp-simd -fPIC -flto -march=native -fopenmp
-O2 -funroll-loops -funroll-all-loops -fstrict-aliasing
-DMKL_LP64 -m64 -O3 -DNDEBUG -fPIC -pedantic -fPIC -Wall -Wextra
-Wmissing-braces -Woverloaded-virtual -Wpointer-arith
-Wsign-compare -Wswitch -Wsynth -Wwrite-strings
-Wno-placement-new -Wno-literal-suffix -Wno-psabi
-Wno-class-memaccess -fopenmp-simd -march=native -mavx
-Wno-unused-local-typedefs -O2 -funroll-loops -funroll-all-loops
-fstrict-aliasing -Werror -flto -std=gnu++17 -MD -MT
CMakeFiles/test_program.dir/source/core/tester_helper.cpp.o -MF
CMakeFiles/test_program.dir/source/core/tester_helper.cpp.o.d -o
CMakeFiles/test_program.dir/source/core/tester_helper.cpp.o -c
~/work_directory/full_physics/Test-Controller/library/source/core/tester_helper.cpp</i><i><br>
</i><i>~/work_directory/full_physics/Test-Controller/library/source/core/tester_helper.cpp:
In member function 'void
tester_helper::nonlinear_step(double&, double)':</i><i><br>
</i><i>~/work_directory/full_physics/Test-Controller/library/source/core/tester_helper.cpp:765:5:
error: 'MatDenseGetArrayWrite' was not declared in this scope</i><i><br>
</i><i> MatDenseGetArrayWrite (petsc_field.pc_spectral,
&write_ptr);</i><i><br>
</i><i> ^~~~~~~~~~~~~~~~~~~~~</i><i><br>
</i><i>~/work_directory/full_physics/Test-Controller/library/source/core/tester_helper.cpp:765:5:
note: suggested alternative: 'MatDenseGetArrayRead'</i><i><br>
</i><i> MatDenseGetArrayWrite (petsc_field.pc_spectral,
&write_ptr);</i><i><br>
</i><i> ^~~~~~~~~~~~~~~~~~~~~</i><i><br>
</i><i> MatDenseGetArrayRead</i><i><br>
</i><i>~/work_directory/full_physics/Test-Controller/library/source/core/tester_helper.cpp:772:5:
error: 'MatDenseRestoreArrayWrite' was not declared in this
scope</i><i><br>
</i><i> MatDenseRestoreArrayWrite (petsc_field.pc_spectral,
&write_ptr);</i><i><br>
</i><i> ^~~~~~~~~~~~~~~~~~~~~~~~~</i><i><br>
</i><i>~/work_directory/full_physics/Test-Controller/library/source/core/tester_helper.cpp:772:5:
note: suggested alternative: 'MatDenseRestoreArrayRead'</i><i><br>
</i><i> MatDenseRestoreArrayWrite (petsc_field.pc_spectral,
&write_ptr);</i><i><br>
</i><i> ^~~~~~~~~~~~~~~~~~~~~~~~~</i><i><br>
</i><i> MatDenseRestoreArrayRead</i><i><br>
</i><i>~/work_directory/full_physics/Test-Controller/library/source/core/tester_helper.cpp:
In member function 'void
tester_helper::nonlinear_step_material_transition()':</i><i><br>
</i><i>~/work_directory/full_physics/Test-Controller/library/source/core/tester_helper.cpp:870:4:
error: 'MatDenseGetArrayWrite' was not declared in this scope</i><i><br>
</i><i> MatDenseGetArrayWrite(split_mat, &write_mat_ptr);</i><i><br>
</i><i> ^~~~~~~~~~~~~~~~~~~~~</i><i><br>
</i><i>~/work_directory/full_physics/Test-Controller/library/source/core/tester_helper.cpp:870:4:
note: suggested alternative: 'MatDenseGetArrayRead'</i><i><br>
</i><i> MatDenseGetArrayWrite(split_mat, &write_mat_ptr);</i><i><br>
</i><i> ^~~~~~~~~~~~~~~~~~~~~</i><i><br>
</i><i> MatDenseGetArrayRead</i><i><br>
</i><i>~/work_directory/full_physics/Test-Controller/library/source/core/tester_helper.cpp:874:4:
error: 'MatDenseRestoreArrayWrite' was not declared in this
scope</i><i><br>
</i><i> MatDenseRestoreArrayWrite(split_mat,
&write_mat_ptr);</i><i><br>
</i><i> ^~~~~~~~~~~~~~~~~~~~~~~~~</i><i><br>
</i><i>~/work_directory/full_physics/Test-Controller/library/source/core/tester_helper.cpp:874:4:
note: suggested alternative: 'MatDenseRestoreArrayRead'</i><i><br>
</i><i> MatDenseRestoreArrayWrite(split_mat,
&write_mat_ptr);</i><i><br>
</i><i> ^~~~~~~~~~~~~~~~~~~~~~~~~</i><i><br>
</i><i> MatDenseRestoreArrayRead</i></p>
<p>Where does that error come from, and how can I fix it/circumvent
it? I compile the program using gcc 8.2.0 (including mpi-wrappers)
on the production machine, and with gcc 9.3.1 on the dev machine.</p>
<p>Thanks,</p>
<p>regards,</p>
<p>Roland<br>
</p>
</body>
</html>