[petsc-users] config error on Cori/KNL

Matthew Knepley knepley at gmail.com
Wed Nov 18 07:27:36 CST 2020


On Wed, Nov 18, 2020 at 8:07 AM Mark Adams <mfadams at lbl.gov> wrote:

> I get this error (sudo not found on KNL at NERSC). I run this on a
> computer node. I will start doing this on a login node but if there is an
> easy fix let me know.
>

Okay, this happens a few levels down. Here is the error:

TEST setInstallDir from
PETSc.options.installDir(/global/u2/m/madams/petsc_install/petsc/config/PETSc/options/installDir.py:39)
TESTING: setInstallDir from
PETSc.options.installDir(config/PETSc/options/installDir.py:39)
   setup installDir to either prefix or if that is not set to
PETSC_DIR/PETSC_ARCH
          Error trying to to test write permissions on directory [Errno 30]
Read-only file system:
'/global/common/software/m1041/petsc_install/petsc_knl_intel/PETScTestDirectory'
            Defined make macro "PREFIXDIR" to
"/global/common/software/m1041/petsc_install/petsc_knl_intel"

It makes you use sudo because it cannot write to the prefix directory.

  Thanks,

     Matt

Mark
>


-- 
What most experimenters take for granted before they begin their
experiments is infinitely more interesting than any results to which their
experiments lead.
-- Norbert Wiener

https://www.cse.buffalo.edu/~knepley/ <http://www.cse.buffalo.edu/~knepley/>
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