[petsc-users] Installation failure

[Satish Balay]

>>>>>>>
          CC linux-intel/obj/sys/error/fp.o
In file included from /usr/include/complex.h(152),
                 from /opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/complex.h(22),
                 from /home/rmondaini/libraries/petsc-3.13.3/include/petscsystypes.h(234),
                 from /home/rmondaini/libraries/petsc-3.13.3/include/petscsys.h(36),
                 from /home/rmondaini/libraries/petsc-3.13.3/src/sys/error/fp.c(19):
/usr/include/x86_64-linux-gnu/bits/cmathcalls.h(55): error: identifier "_Float32" is undefined
  __MATHCALL (cacos, (_Mdouble_complex_ __z));
  ^

          CC linux-intel/obj/sys/error/errstop.o
In file included from /home/rmondaini/libraries/petsc-3.13.3/include/petscmath.h(13),
                 from /home/rmondaini/libraries/petsc-3.13.3/include/petscsys.h(322),
                 from /home/rmondaini/libraries/petsc-3.13.3/src/sys/error/errstop.c(2):
/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/math.h(1214): error: identifier "_LIB_VERSION_TYPE" is undefined
  _LIBIMF_EXT _LIB_VERSIONIMF_TYPE _LIBIMF_PUBVAR _LIB_VERSIONIMF;
              ^

<<<<<

Looks like this version of intel compiler has issues with system (gcc) include files.

Can you use gcc/g++ instead for this build?

Satish

On Tue, 28 Jul 2020, Rubem Mondaini wrote:

> Thanks a bunch, Satish!
> 
> I can configure PETSc now (see configure.log attached), but the compilation breaks down (see make.log). I am wondering if my problem is related to this: https://community.intel.com/t5/Intel-C-Compiler/LIB-VERSION-TYPE-is-undefined-icc-and-icps-errors-under-Debian/td-p/1160017
> 
> 
> > -----Original Messages-----
> > From: "Satish Balay" <balay at mcs.anl.gov>
> > Sent Time: 2020-07-28 13:38:09 (Tuesday)
> > To: "Rubem Mondaini" <rmondaini at csrc.ac.cn>
> > Cc: "Barry Smith" <bsmith at petsc.dev>, petsc-users at mcs.anl.gov
> > Subject: Re: [petsc-users] [SPAM] Re:  Installation failure
> > 
> > something went wrong - but petsc configure didn't capture this error.
> > 
> > You can retry with:
> > 
> > ./configure PETSC_ARCH=linux-intel --with-cc=mpiicc --with-cxx=0 --with-fc=mpiifort --with-blaslapack-dir=/opt/intel/compilers_and_libraries_2016/linux/mkl --with-scalar-type=complex  --with-64-bit-indices
> > 
> > And perhaps add one more option: LIBS="-Bstatic -lifcore -Bdynamic"
> > 
> > Note: --with-64-bit-blas-indices is not appropriate here.
> > 
> > Satish
> > 
> > On Tue, 28 Jul 2020, Rubem Mondaini wrote:
> > 
> > > Dear Barry,
> > > 
> > > thank you very much for the reply. I removed the options "--with-mpi-include"
> > > and "--with-mpi-lib", but I still get the same error. I attach the
> > > configure.log file.
> > > 
> > > I can confirm that I can compile and run other codes with my compilers,
> > > however.
> > > 
> > > Many thanks!
> > > 
> > > Rubem
> > > 
> > > On 7/28/20 10:32 AM, Barry Smith wrote:
> > > >     Hmm, configure is a mess.
> > > >
> > > >     Since you  explicitly use MPI compilers
> > > >
> > > >      --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort
> > > >
> > > >      the
> > > >
> > > >      --with-mpi-include=/opt/intel/compilers_and_libraries_2016/linux/mpi/intel64/include
> > > >      --with-mpi-lib=/opt/intel/compilers_and_libraries_2016.3.210/linux/mpi/intel64/lib/libmpicxx.a
> > > >
> > > >      are not needed and should not be provided (Satish I thought this would
> > > >      generate an error? Why doesn't it?)
> > > >
> > > >      Please try without those arguments and send the configure.log if it
> > > >      fails.
> > > >
> > > >       The error message isn't completely right.
> > > >
> > > >       Cannot run executables created with C.
> > > >
> > > >       This is because the call the call  to
> > > >       self.setCompilers.checkCompiler('C') doesn't have enough context to
> > > >       print a decent error message.
> > > >
> > > >     Barry
> > > >
> > > >
> > > >> On Jul 27, 2020, at 2:06 AM, Rubem Mondaini <rmondaini at csrc.ac.cn> wrote:
> > > >>
> > > >> Dears,
> > > >>
> > > >> I have tried to install the PETSc library on my machine and I am failing. I
> > > >> have managed to install it on another one, which possess similar
> > > >> configurations for the compilers, and there things do seem to be very much
> > > >> fine.
> > > >>
> > > >> I am attaching the corresponding configure.log. Is there something simple
> > > >> that I am missing?
> > > >>
> > > >> Best,
> > > >>
> > > >>
> > > >> <configure.log>
> > > 
>