[petsc-users] error rebasing with master - DMPlex - Hypre

[Matthew Knepley]

I removed that function. Is it still in your Fortran bindings?

  Matt

On Mon, Apr 6, 2020 at 11:47 AM Mark Adams <mfadams at lbl.gov> wrote:

> 11:41 mark/feature-xgc-interface-rebase<> ~/Codes/petsc$ make
> PETSC_DIR=/Users/markadams/Codes/petsc PETSC_ARCH=arch-macosx-gnu-g check
> Running check examples to verify correct installation
> Using PETSC_DIR=/Users/markadams/Codes/petsc and
> PETSC_ARCH=arch-macosx-gnu-g
> make[3]: [ex19.PETSc] Error 2 (ignored)
> *******************Error detected during compile or
> link!*******************
> See http://www.mcs.anl.gov/petsc/documentation/faq.html
> /Users/markadams/Codes/petsc/src/snes/tutorials ex19
>
> *********************************************************************************
> /usr/local/Cellar/mpich/3.3.2/bin/mpicc -Wl,-multiply_defined,suppress
> -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs
> -Wl,-search_paths_first -Wl,-no_compact_unwind  -Wall -Wwrite-strings
> -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector
> -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0
>  -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress
> -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind
>  -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas
> -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden
> -g -O0  -I/Users/markadams/Codes/petsc/include
> -I/Users/markadams/Codes/petsc/arch-macosx-gnu-g/include -I/opt/X11/include
> -I/usr/local/Cellar/mpich/3.3.2/include      ex19.c
>  -Wl,-rpath,/Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib
> -L/Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib
> -Wl,-rpath,/Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib
> -L/Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib
> -Wl,-rpath,/opt/X11/lib -L/opt/X11/lib
> -Wl,-rpath,/usr/local/Cellar/mpich/3.3.2/lib
> -L/usr/local/Cellar/mpich/3.3.2/lib
> -Wl,-rpath,/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0
> -L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0
> -Wl,-rpath,/usr/local/Cellar/gcc/9.3.0/lib/gcc/9
> -L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9 -lpetsc -lfftw3_mpi -lfftw3 -lp4est
> -lsc -llapack -lblas -lhdf5hl_fortran -lhdf5_fortran -lhdf5_hl -lhdf5
> -lparmetis -lmetis -ltriangle -lz -lX11 -lc++ -ldl -lmpifort -lmpi -lpmpi
> -lgfortran -lquadmath -lm -lc++ -ldl -o ex19
> Undefined symbols for architecture x86_64:
>   "_DMPlexGetHybridBounds", referenced from:
>       import-atom in libpetsc.dylib
> ld: symbol(s) not found for architecture x86_64
> clang: error: linker command failed with exit code 1 (use -v to see
> invocation)
> make[4]: *** [ex19] Error 1
> make[3]: [ex47.PETSc] Error 2 (ignored)
>


-- 
What most experimenters take for granted before they begin their
experiments is infinitely more interesting than any results to which their
experiments lead.
-- Norbert Wiener

https://www.cse.buffalo.edu/~knepley/ <http://www.cse.buffalo.edu/~knepley/>
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