[petsc-users] error rebasing with master - DMPlex - Hypre

[Mark Adams]

11:41 mark/feature-xgc-interface-rebase<> ~/Codes/petsc$ make
PETSC_DIR=/Users/markadams/Codes/petsc PETSC_ARCH=arch-macosx-gnu-g check
Running check examples to verify correct installation
Using PETSC_DIR=/Users/markadams/Codes/petsc and
PETSC_ARCH=arch-macosx-gnu-g
make[3]: [ex19.PETSc] Error 2 (ignored)
*******************Error detected during compile or link!*******************
See http://www.mcs.anl.gov/petsc/documentation/faq.html
/Users/markadams/Codes/petsc/src/snes/tutorials ex19
*********************************************************************************
/usr/local/Cellar/mpich/3.3.2/bin/mpicc -Wl,-multiply_defined,suppress
-Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs
-Wl,-search_paths_first -Wl,-no_compact_unwind  -Wall -Wwrite-strings
-Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector
-fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0
 -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress
-Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind
 -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas
-fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden
-g -O0  -I/Users/markadams/Codes/petsc/include
-I/Users/markadams/Codes/petsc/arch-macosx-gnu-g/include -I/opt/X11/include
-I/usr/local/Cellar/mpich/3.3.2/include      ex19.c
 -Wl,-rpath,/Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib
-L/Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib
-Wl,-rpath,/Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib
-L/Users/markadams/Codes/petsc/arch-macosx-gnu-g/lib
-Wl,-rpath,/opt/X11/lib -L/opt/X11/lib
-Wl,-rpath,/usr/local/Cellar/mpich/3.3.2/lib
-L/usr/local/Cellar/mpich/3.3.2/lib
-Wl,-rpath,/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0
-L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0
-Wl,-rpath,/usr/local/Cellar/gcc/9.3.0/lib/gcc/9
-L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9 -lpetsc -lfftw3_mpi -lfftw3 -lp4est
-lsc -llapack -lblas -lhdf5hl_fortran -lhdf5_fortran -lhdf5_hl -lhdf5
-lparmetis -lmetis -ltriangle -lz -lX11 -lc++ -ldl -lmpifort -lmpi -lpmpi
-lgfortran -lquadmath -lm -lc++ -ldl -o ex19
Undefined symbols for architecture x86_64:
  "_DMPlexGetHybridBounds", referenced from:
      import-atom in libpetsc.dylib
ld: symbol(s) not found for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see
invocation)
make[4]: *** [ex19] Error 1
make[3]: [ex47.PETSc] Error 2 (ignored)
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