[petsc-users] p4est error

[Isaac, Tobin G]

I think adler32 is in zlib: p4est typically finds it in configure.  Can you send along config.log from externalpackages/git.p4est?

On October 20, 2018 4:52:54 PM EDT, Mark Adams <mfadams at lbl.gov> wrote:
>I am getting this error. This was a clean build (nuked the arch
>directory).
>
>13:50 nid12922 master= ~/petsc_install/petsc$ make
>PETSC_DIR=/global/homes/m/madams/petsc_install/petsc-cori-haswell-opt-intel
>PETSC_ARCH="" test
>Running test examples to verify correct installation
>Using
>PETSC_DIR=/global/homes/m/madams/petsc_install/petsc-cori-haswell-opt-intel
>and PETSC_ARCH=
>*******************Error detected during compile or
>link!*******************
>See http://www.mcs.anl.gov/petsc/documentation/faq.html
>/global/homes/m/madams/petsc_install/petsc/src/snes/examples/tutorials
>ex19
>*********************************************************************************
>cc -o ex19.o -c -g -fp-model fast
>-I/global/homes/m/madams/petsc_install/petsc-cori-haswell-opt-intel/include
>  `pwd`/ex19.c
>cc -g -fp-model fast  -o ex19 ex19.o
>-L/global/homes/m/madams/petsc_install/petsc-cori-haswell-opt-intel/lib
>-Wl,-rpath,/global/homes/m/madams/petsc_install/petsc-cori-haswell-opt-intel/lib
>-L/global/homes/m/madams/petsc_install/petsc-cori-haswell-opt-intel/lib
>-lpetsc -lcmumps -ldmumps -lsmumps -lzmumps -lmumps_common -lpord
>-lscalapack -lfftw3_mpi -lfftw3 -lp4est -lsc -lflapack -lfblas
>-lhdf5hl_fortran -lhdf5_fortran -lhdf5_hl -lhdf5 -lchaco -lparmetis
>-lmetis
>-lstdc++ -ldl
>/global/homes/m/madams/petsc_install/petsc-cori-haswell-opt-intel/lib/libpetsc.a(dlimpl.o):
>In function `PetscDLOpen':
>/global/u2/m/madams/petsc_install/petsc/src/sys/dll/dlimpl.c:108:
>warning:
>Using 'dlopen' in statically linked applications requires at runtime
>the
>shared libraries from the glibc version used for linking
>/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../x86_64-suse-linux/bin/ld:
>Warning: alignment 8 of symbol `ARCHITECTURE' in
>/global/homes/m/madams/petsc_install/petsc-cori-haswell-opt-intel/lib/libchaco.a(user_params.o)
>is smaller than 32 in
>/opt/cray/pe/pmi/5.0.13/lib64/libpmi.a(_pmi_topology_discovery.o)
>/global/homes/m/madams/petsc_install/petsc-cori-haswell-opt-intel/lib/libpetsc.a(send.o):
>In function `PetscOpenSocket':
>/global/u2/m/madams/petsc_install/petsc/src/sys/classes/viewer/impls/socket/send.c:108:
>warning: Using 'gethostbyname' in statically linked applications
>requires
>at runtime the shared libraries from the glibc version used for linking
>/global/homes/m/madams/petsc_install/petsc-cori-haswell-opt-intel/lib/libp4est.a(src_libp4est_la-p4est.o):
>In function `p4est_checksum':
>/global/u2/m/madams/petsc_install/petsc/arch-cori-haswell-opt-intel/externalpackages/git.p4est/src/p4est.c:3228:
>undefined reference to `adler32'
>/global/u2/m/madams/petsc_install/petsc/arch-cori-haswell-opt-intel/externalpackages/git.p4est/src/p4est.c:3236:
>undefined reference to `adler32_combine'
>/global/homes/m/madams/petsc_install/petsc-cori-haswell-opt-intel/lib/libp4est.a(src_libp4est_la-p4est_communication.o):
>In function `p4est_comm_checksum':
>/global/u2/m/madams/petsc_install/petsc/arch-cori-haswell-opt-intel/externalpackages/git.p4est/src/p4est_communication.c:903:
>undefined reference to `adler32_combine'
>/global/homes/m/madams/petsc_install/petsc-cori-haswell-opt-intel/lib/libp4est.a(src_libp4est_la-p8est.o):
>In function `p8est_checksum':
>/global/u2/m/madams/petsc_install/petsc/arch-cori-haswell-opt-intel/externalpackages/git.p4est/src/p4est.c:3228:
>undefined reference to `adler32'
>/global/u2/m/madams/petsc_install/petsc/arch-cori-haswell-opt-intel/externalpackages/git.p4est/src/p4est.c:3236:
>undefined reference to `adler32_combine'
>/global/homes/m/madams/petsc_install/petsc-cori-haswell-opt-intel/lib/libp4est.a(src_libp4est_la-p8est_communication.o):
>In function `p8est_comm_checksum':
>/global/u2/m/madams/petsc_install/petsc/arch-cori-haswell-opt-intel/externalpackages/git.p4est/src/p4est_communication.c:903:
>undefined reference to `adler32_combine'
>/global/homes/m/madams/petsc_install/petsc-cori-haswell-opt-intel/lib/libsc.a(src_libsc_la-sc_containers.o):
>In function `sc_array_checksum':
>/global/u2/m/madams/petsc_install/petsc/arch-cori-haswell-opt-intel/externalpackages/git.p4est/sc/src/sc_containers.c:565:
>undefined reference to `adler32'
>/global/u2/m/madams/petsc_install/petsc/arch-cori-haswell-opt-intel/externalpackages/git.p4est/sc/src/sc_containers.c:571:
>undefined reference to `adler32'
>/global/homes/m/madams/petsc_install/petsc-cori-haswell-opt-intel/lib/libsc.a(src_libsc_la-sc_io.o):
>In function `sc_vtk_write_compressed':
>/global/u2/m/madams/petsc_install/petsc/arch-cori-haswell-opt-intel/externalpackages/git.p4est/sc/src/sc_io.c:492:
>undefined reference to `compress2'
>/global/u2/m/madams/petsc_install/petsc/arch-cori-haswell-opt-intel/externalpackages/git.p4est/sc/src/sc_io.c:507:
>undefined reference to `compress2'
>/global/homes/m/madams/petsc_install/petsc-cori-haswell-opt-intel/lib/petsc/conf/test:13:
>recipe for target 'ex19' failed
>gmake[3]: [ex19] Error 1 (ignored)
>true ex19
>rm ex19.o