[petsc-users] PetscPartitioner is missing for fortran
Jiaoyan Li
Jiaoyan.Li at inl.gov
Tue Nov 27 10:46:25 CST 2018
Matt,
Thanks a lot for your reply, and I look forward to your further info.
Best,
Jiaoyan
From: Matthew Knepley <knepley at gmail.com>
Date: Tuesday, November 27, 2018 at 09:06
To: Jiaoyan Li <Jiaoyan.Li at inl.gov>
Cc: "Klaij, Christiaan" <C.Klaij at marin.nl>, PETSc <petsc-users at mcs.anl.gov>
Subject: Re: [petsc-users] PetscPartitioner is missing for fortran
On Tue, Nov 27, 2018 at 10:51 AM Jiaoyan Li via petsc-users <petsc-users at mcs.anl.gov<mailto:petsc-users at mcs.anl.gov>> wrote:
Thanks, Chris, for your kind reply. Yes, I believe the mailing list is the most convenient way for Petsc's to communicate with each other.
Hi Jiaoyan,
I will fix this. Its taking me a few days because its the end of the semester and things get a little compressed. I should have it done this week.
Thanks,
Matt
Also, I am wondering if you may happen to use "PetscPartitioner" before? Have you ever tried to fix Petsc-Fortran problem by yourself before? I believe Petsc needs to build an interface for Fortran from the C source code. But, I don't know where Petsc does that. I am just trying to see if I can fix it by myself. Thank you.
Jiaoyan
On 11/27/18, 00:44, "petsc-users on behalf of Klaij, Christiaan via petsc-users" <petsc-users-bounces at mcs.anl.gov<mailto:petsc-users-bounces at mcs.anl.gov> on behalf of petsc-users at mcs.anl.gov<mailto:petsc-users at mcs.anl.gov>> wrote:
Hi Jiaoyan,
I've been using the fortran interface since 2004. During these
years I only found a handful of things missing. After an email to
this list the developers are usually quite fast in fixing the
problem.
Chris
Date: Mon, 26 Nov 2018 16:41:29 +0000
From: Jiaoyan Li <Jiaoyan.Li at inl.gov<mailto:Jiaoyan.Li at inl.gov>>
To: "petsc-users at mcs.anl.gov<mailto:petsc-users at mcs.anl.gov>" <petsc-users at mcs.anl.gov<mailto:petsc-users at mcs.anl.gov>>
Subject: [petsc-users] PetscPartitioner is missing for fortran
Message-ID: <CA349658-2D98-4BA4-9773-C3685A0CC8AC at inl.gov<mailto:CA349658-2D98-4BA4-9773-C3685A0CC8AC at inl.gov>>
Content-Type: text/plain; charset="utf-8"
Dear Petsc Users:
I am developing a Fortran code which uses Petsc APIs. But, seems the interface between Fortran and Petsc is not completed, as replied by Barry. Is there anyone may have some experience on building the Fortran interface for Petsc? Any suggestions or comments are highly appreciated. Thank you.
Have a nice day,
Jiaoyan
------------------------------------------------
On 11/21/18, 19:25, "Smith, Barry F." <bsmith at mcs.anl.gov<mailto:bsmith at mcs.anl.gov><mailto:bsmith at mcs.anl.gov<mailto:bsmith at mcs.anl.gov>>> wrote:
Matt,
PetscPartitioner is missing from lib/petsc/conf/bfort-petsc.txt
Barry
> On Nov 21, 2018, at 3:33 PM, Jiaoyan Li via petsc-users <petsc-users at mcs.anl.gov<mailto:petsc-users at mcs.anl.gov><mailto:petsc-users at mcs.anl.gov<mailto:petsc-users at mcs.anl.gov>>> wrote:
>
> Dear Petsc users:
>
> I am trying to use Petsc APIs for Fortran. One problem that I am facing right now is about the PetscPartitioner, i.e.,
>
> #include ?petsc/finclude/petsc.h?
> use petscdmplex
>
> PetscPartitioner :: part
> PetscErrorCode :: ierr
>
> Call PetscPartitionerCreate(PETSC_COMM_WORLD, part, ierr)
>
> But, I got the error message as follows:
>
> [0]PETSC ERROR: --------------------- Error Message --------------------------------------------------------------
> [0]PETSC ERROR: Null argument, when expecting valid pointer
> [0]PETSC ERROR: Null Pointer: Parameter # 2
> [0]PETSC ERROR: See https://urldefense.proofpoint.com/v2/url?u=http-3A__www.mcs.anl.gov_petsc_documentation_faq.html&d=DwIGaQ&c=54IZrppPQZKX9mLzcGdPfFD1hxrcB__aEkJFOKJFd00&r=5MMpjBrVOPpVGfIH9op1r4nz1k4YC8LDRnpo_HwMgZU&m=1lomdbavAvxQQpe-IZtEv3xEovYeZ9lxbOzN-sE8CUQ&s=BYCTTDqEflIdLwRAkF4txknqLg0jeyOcdodQkfHj-TA&e= for trouble shooting.
> [0]PETSC ERROR: Petsc Release Version 3.10.2, unknown
> [0]PETSC ERROR: ./htm3d on a arch-linux2-c-opt named fn607018 by LIJ Wed Nov 21 16:30:35 2018
> [0]PETSC ERROR: Configure options --download-fblaslapack --with-mpi-dir=/opt/mpitch-3.2.1 -download-exodusii --download-hdf5 --download-netcdf --download-zlib --download-pnetcdf
> [0]PETSC ERROR: #1 PetscPartitionerCreate() line 601 in /home/lij/packages/petsc/src/dm/impls/plex/plexpartition.c
> [1]PETSC ERROR: --------------------- Error Message --------------------------------------------------------------
> [1]PETSC ERROR: Null argument, when expecting valid pointer
> [1]PETSC ERROR: Null Pointer: Parameter # 2
> [1]PETSC ERROR: See https://urldefense.proofpoint.com/v2/url?u=http-3A__www.mcs.anl.gov_petsc_documentation_faq.html&d=DwIGaQ&c=54IZrppPQZKX9mLzcGdPfFD1hxrcB__aEkJFOKJFd00&r=5MMpjBrVOPpVGfIH9op1r4nz1k4YC8LDRnpo_HwMgZU&m=1lomdbavAvxQQpe-IZtEv3xEovYeZ9lxbOzN-sE8CUQ&s=BYCTTDqEflIdLwRAkF4txknqLg0jeyOcdodQkfHj-TA&e= for trouble shooting.
> [1]PETSC ERROR: Petsc Release Version 3.10.2, unknown
> [1]PETSC ERROR: ./htm3d on a arch-linux2-c-opt named fn607018 by LIJ Wed Nov 21 16:30:35 2018
> [1]PETSC ERROR: Configure options --download-fblaslapack --with-mpi-dir=/opt/mpitch-3.2.1 -download-exodusii --download-hdf5 --download-netcdf --download-zlib --download-pnetcdf
> [1]PETSC ERROR: #1 PetscPartitionerCreate() line 601 in /home/lij/packages/petsc/src/dm/impls/plex/plexpartition.c
> [2]PETSC ERROR: --------------------- Error Message --------------------------------------------------------------
> [2]PETSC ERROR: Null argument, when expecting valid pointer
> [2]PETSC ERROR: Null Pointer: Parameter # 2
> [2]PETSC ERROR: See https://urldefense.proofpoint.com/v2/url?u=http-3A__www.mcs.anl.gov_petsc_documentation_faq.html&d=DwIGaQ&c=54IZrppPQZKX9mLzcGdPfFD1hxrcB__aEkJFOKJFd00&r=5MMpjBrVOPpVGfIH9op1r4nz1k4YC8LDRnpo_HwMgZU&m=1lomdbavAvxQQpe-IZtEv3xEovYeZ9lxbOzN-sE8CUQ&s=BYCTTDqEflIdLwRAkF4txknqLg0jeyOcdodQkfHj-TA&e= for trouble shooting.
> [2]PETSC ERROR: Petsc Release Version 3.10.2, unknown
> [2]PETSC ERROR: ./htm3d on a arch-linux2-c-opt named fn607018 by LIJ Wed Nov 21 16:30:35 2018
> [2]PETSC ERROR: Configure options --download-fblaslapack --with-mpi-dir=/opt/mpitch-3.2.1 -download-exodusii --download-hdf5 --download-netcdf --download-zlib --download-pnetcdf
> [2]PETSC ERROR: #1 PetscPartitionerCreate() line 601 in /home/lij/packages/petsc/src/dm/impls/plex/plexpartition.c
> [3]PETSC ERROR: --------------------- Error Message --------------------------------------------------------------
> [3]PETSC ERROR: Null argument, when expecting valid pointer
> [3]PETSC ERROR: Null Pointer: Parameter # 2
> [3]PETSC ERROR: See https://urldefense.proofpoint.com/v2/url?u=http-3A__www.mcs.anl.gov_petsc_documentation_faq.html&d=DwIGaQ&c=54IZrppPQZKX9mLzcGdPfFD1hxrcB__aEkJFOKJFd00&r=5MMpjBrVOPpVGfIH9op1r4nz1k4YC8LDRnpo_HwMgZU&m=1lomdbavAvxQQpe-IZtEv3xEovYeZ9lxbOzN-sE8CUQ&s=BYCTTDqEflIdLwRAkF4txknqLg0jeyOcdodQkfHj-TA&e= for trouble shooting.
> [3]PETSC ERROR: Petsc Release Version 3.10.2, unknown
> [3]PETSC ERROR: ./htm3d on a arch-linux2-c-opt named fn607018 by LIJ Wed Nov 21 16:30:35 2018
> [3]PETSC ERROR: Configure options --download-fblaslapack --with-mpi-dir=/opt/mpitch-3.2.1 -download-exodusii --download-hdf5 --download-netcdf --download-zlib --download-pnetcdf
> [3]PETSC ERROR: #1 PetscPartitionerCreate() line 601 in /home/lij/packages/petsc/src/dm/impls/plex/plexpartition.c
>
> Is there anyone who may encounter similar problem before? Any suggestions or commends are highly appreciated. Thank you very much.
>
> Best,
>
> Jiaoyan
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dr. ir. Christiaan Klaij | Senior Researcher | Research & Development
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