[petsc-users] problem configuring 3.8.3 with intel mpi

Thu Mar 22 07:42:13 CDT 2018

Matt,

The problem must be earlier, because it should be using mpicc for
the check, not gcc. The mpi.h is found here by the 3.7.5 config:

Executing: mpicc -E  -I/tmp/petsc-JIF0WC/config.setCompilers -I/tmp/petsc-JIF0WC/config.types -I/tmp/petsc-JIF0WC/config.headers  -I/opt/intel/compilers_and_libraries_2017.1.132/linux/mpi/include -I/opt/intel/compilers_and_libraries_2017.1.132/linux/mpi/intel64/include /tmp/petsc-JIF0WC/config.headers/conftest.c
stdout:
# 1 "/tmp/petsc-JIF0WC/config.headers/conftest.c"
# 1 "/tmp/petsc-JIF0WC/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-JIF0WC/config.headers/conftest.c" 2
# 1 "/tmp/petsc-JIF0WC/config.headers/conffix.h" 1
# 3 "/tmp/petsc-JIF0WC/config.headers/conftest.c" 2
# 1 "/opt/intel/compilers_and_libraries_2017.1.132/linux/mpi/intel64/include/mpi.h" 1

Note that the machine and ENV are exactly the same, the only
change is 3.7.5 versus 3.8.3.

Chris

dr. ir. Christiaan Klaij | Senior Researcher | Research & Development
MARIN | T +31 317 49 33 44 | C.Klaij at marin.nl<mailto:C.Klaij at marin.nl> | www.marin.nl<http://www.marin.nl>

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________________________________
From: Matthew Knepley <knepley at gmail.com>
Sent: Thursday, March 22, 2018 1:27 PM
To: Klaij, Christiaan
Cc: petsc-users at mcs.anl.gov
Subject: Re: [petsc-users] problem configuring 3.8.3 with intel mpi

On Thu, Mar 22, 2018 at 8:00 AM, Klaij, Christiaan <C.Klaij at marin.nl<mailto:C.Klaij at marin.nl>> wrote:
Satish,

I'm trying to upgrade from 3.7.5 to 3.8.3. The first problem is
that my intel mpi installation, which works for 3.7.5, fails with
3.8.3, see the attached logs. It seems that the mpi compilers are
not found anymore. Any ideas?

The header check failed:

                  Checking include with compiler flags var CPPFLAGS ['/opt/intel/compilers_and_libraries_2017.1.132/linux/mpi/include']
Executing: gcc -E  -I/tmp/petsc-8GlPlN/config.setCompilers -I/tmp/petsc-8GlPlN/config.types -I/tmp/petsc-8GlPlN/config.headers  -I/opt/intel/compilers_and_libraries_2017.1.132/linux/mpi/include /tmp/petsc-8GlPlN/config.headers/conftest.c
stdout:
# 1 "/tmp/petsc-8GlPlN/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/usr/include/stdc-predef.h" 1 3 4
# 1 "<command-line>" 2
# 1 "/tmp/petsc-8GlPlN/config.headers/conftest.c"
# 1 "/tmp/petsc-8GlPlN/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-8GlPlN/config.headers/conftest.c" 2
# 1 "/tmp/petsc-8GlPlN/config.headers/conffix.h" 1
# 3 "/tmp/petsc-8GlPlN/config.headers/conftest.c" 2
Possible ERROR while running preprocessor: exit code 256
stdout:
# 1 "/tmp/petsc-8GlPlN/config.headers/conftest.c"
# 1 "<built-in>"
# 1 "<command-line>"
# 1 "/usr/include/stdc-predef.h" 1 3 4
# 1 "<command-line>" 2
# 1 "/tmp/petsc-8GlPlN/config.headers/conftest.c"
# 1 "/tmp/petsc-8GlPlN/config.headers/confdefs.h" 1
# 2 "/tmp/petsc-8GlPlN/config.headers/conftest.c" 2
# 1 "/tmp/petsc-8GlPlN/config.headers/conffix.h" 1
# 3 "/tmp/petsc-8GlPlN/config.headers/conftest.c" 2stderr:
/tmp/petsc-8GlPlN/config.headers/conftest.c:3:17: fatal error: mpi.h: No such file or directory
 #include <mpi.h>
                 ^
compilation terminated.
Source:
#include "confdefs.h"
#include "conffix.h"
#include <mpi.h>
Preprocess stderr before filtering:/tmp/petsc-8GlPlN/config.headers/conftest.c:3:17: fatal error: mpi.h: No such file or directory
 #include <mpi.h>

Where are the headers?

  Thanks,

    Matt

Chris

dr. ir. Christiaan Klaij  | Senior Researcher | Research & Development
MARIN | T +31 317 49 33 44 | mailto:C.Klaij at marin.nl<mailto:C.Klaij at marin.nl> | http://www.marin.nl

MARIN news: http://www.marin.nl/web/News/News-items/Office-tool-aNySIM-integrated-into-realtime-onboard-software-1.htm

--
What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead.
-- Norbert Wiener

https://www.cse.buffalo.edu/~knepley/<http://www.caam.rice.edu/~mk51/>

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