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<p>Matt,<br>
<br>
The problem must be earlier, because it should be using mpicc for<br>
the check, not gcc. The mpi.h is found here by the 3.7.5 config:<br>
<br>
Executing: mpicc -E -I/tmp/petsc-JIF0WC/config.setCompilers -I/tmp/petsc-JIF0WC/config.types -I/tmp/petsc-JIF0WC/config.headers -I/opt/intel/compilers_and_libraries_2017.1.132/linux/mpi/include -I/opt/intel/compilers_and_libraries_2017.1.132/linux/mpi/intel64/include
/tmp/petsc-JIF0WC/config.headers/conftest.c <br>
stdout:<br>
# 1 "/tmp/petsc-JIF0WC/config.headers/conftest.c"<br>
# 1 "/tmp/petsc-JIF0WC/config.headers/confdefs.h" 1<br>
# 2 "/tmp/petsc-JIF0WC/config.headers/conftest.c" 2<br>
# 1 "/tmp/petsc-JIF0WC/config.headers/conffix.h" 1<br>
# 3 "/tmp/petsc-JIF0WC/config.headers/conftest.c" 2<br>
# 1 "/opt/intel/compilers_and_libraries_2017.1.132/linux/mpi/intel64/include/mpi.h" 1<br>
<br>
Note that the machine and ENV are exactly the same, the only<br>
change is 3.7.5 versus 3.8.3.<br>
<br>
Chris<br>
</p>
<div style="color: rgb(33, 33, 33);"></div>
<br>
<font style="font-family:Verdana;font-size:8pt;color:#7D7D7D;font-weight:bold;">dr. ir.</font><font style="font-family:Verdana;font-size:8pt;color:#7D7D7D;font-weight:bold;">
</font><font style="font-family: Verdana;font-size:8pt;color:#7D7D7D;font-weight:bold;">Christiaan</font><font style="font-family: Verdana;font-size:8pt;color:#7D7D7D;font-weight:bold;">
</font><font style="font-family:Verdana;font-size:8pt;color:#7D7D7D;font-weight:bold;">Klaij</font><font size="3" face="Segoe UI"></font><font style="font-family:Verdana;font-size:8pt;color:#7D7D7D;font-weight:bold;"> |
</font><font style="font-family:Verdana;font-size:8pt;color:#7D7D7D;font-weight:bold;">Senior Researcher</font><font style="font-family:Verdana;font-size:8pt;color:#7D7D7D;font-weight:bold;"> |
</font><font style="font-family:Verdana;font-size:8pt;color:#7D7D7D;font-weight:bold;">Research & Development</font><br>
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</font><font style="font-family:Verdana;font-size:8pt;color:#7D7D7D;">+31 317 49 33 44</font><font color="#7d7d7d" size="2" face="Segoe UI"></font><font style="font-family:Verdana;font-size:8pt;"> |
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<div id="divRplyFwdMsg" dir="ltr"><font style="font-size:11pt" face="Calibri, sans-serif" color="#000000"><b>From:</b> Matthew Knepley <knepley@gmail.com><br>
<b>Sent:</b> Thursday, March 22, 2018 1:27 PM<br>
<b>To:</b> Klaij, Christiaan<br>
<b>Cc:</b> petsc-users@mcs.anl.gov<br>
<b>Subject:</b> Re: [petsc-users] problem configuring 3.8.3 with intel mpi</font>
<div> </div>
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<div class="gmail_extra">
<div class="gmail_quote">On Thu, Mar 22, 2018 at 8:00 AM, Klaij, Christiaan <span dir="ltr">
<<a href="mailto:C.Klaij@marin.nl" target="_blank">C.Klaij@marin.nl</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex; border-left:1px solid rgb(204,204,204); padding-left:1ex">
Satish,<br>
<br>
I'm trying to upgrade from 3.7.5 to 3.8.3. The first problem is<br>
that my intel mpi installation, which works for 3.7.5, fails with<br>
3.8.3, see the attached logs. It seems that the mpi compilers are<br>
not found anymore. Any ideas?<br>
</blockquote>
<div><br>
</div>
<div>The header check failed:</div>
<div><br>
</div>
<div>
<div> Checking include with compiler flags var CPPFLAGS ['/opt/intel/compilers_and_libraries_2017.1.132/linux/mpi/include']</div>
<div>Executing: gcc -E -I/tmp/petsc-8GlPlN/config.setCompilers -I/tmp/petsc-8GlPlN/config.types -I/tmp/petsc-8GlPlN/config.headers -I/opt/intel/compilers_and_libraries_2017.1.132/linux/mpi/include /tmp/petsc-8GlPlN/config.headers/conftest.c </div>
<div>stdout:</div>
<div># 1 "/tmp/petsc-8GlPlN/config.headers/conftest.c"</div>
<div># 1 "<built-in>"</div>
<div># 1 "<command-line>"</div>
<div># 1 "/usr/include/stdc-predef.h" 1 3 4</div>
<div># 1 "<command-line>" 2</div>
<div># 1 "/tmp/petsc-8GlPlN/config.headers/conftest.c"</div>
<div># 1 "/tmp/petsc-8GlPlN/config.headers/confdefs.h" 1</div>
<div># 2 "/tmp/petsc-8GlPlN/config.headers/conftest.c" 2</div>
<div># 1 "/tmp/petsc-8GlPlN/config.headers/conffix.h" 1</div>
<div># 3 "/tmp/petsc-8GlPlN/config.headers/conftest.c" 2</div>
<div>Possible ERROR while running preprocessor: exit code 256</div>
<div>stdout:</div>
<div># 1 "/tmp/petsc-8GlPlN/config.headers/conftest.c"</div>
<div># 1 "<built-in>"</div>
<div># 1 "<command-line>"</div>
<div># 1 "/usr/include/stdc-predef.h" 1 3 4</div>
<div># 1 "<command-line>" 2</div>
<div># 1 "/tmp/petsc-8GlPlN/config.headers/conftest.c"</div>
<div># 1 "/tmp/petsc-8GlPlN/config.headers/confdefs.h" 1</div>
<div># 2 "/tmp/petsc-8GlPlN/config.headers/conftest.c" 2</div>
<div># 1 "/tmp/petsc-8GlPlN/config.headers/conffix.h" 1</div>
<div># 3 "/tmp/petsc-8GlPlN/config.headers/conftest.c" 2stderr:</div>
<div>/tmp/petsc-8GlPlN/config.headers/conftest.c:3:17: fatal error: mpi.h: No such file or directory</div>
<div> #include <mpi.h></div>
<div> ^</div>
<div>compilation terminated.</div>
<div>Source:</div>
<div>#include "confdefs.h"</div>
<div>#include "conffix.h"</div>
<div>#include <mpi.h></div>
<div>Preprocess stderr before filtering:/tmp/petsc-8GlPlN/config.headers/conftest.c:3:17: fatal error: mpi.h: No such file or directory</div>
<div> #include <mpi.h></div>
</div>
<div><br>
</div>
<div>Where are the headers?</div>
<div><br>
</div>
<div> Thanks,</div>
<div><br>
</div>
<div> Matt</div>
<div> </div>
<blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex; border-left:1px solid rgb(204,204,204); padding-left:1ex">
Chris<br>
<br>
<br>
dr. ir. Christiaan Klaij | Senior Researcher | Research & Development<br>
MARIN | T +31 317 49 33 44 | mailto:<a href="mailto:C.Klaij@marin.nl">C.Klaij@marin.nl</a> |
<a href="http://www.marin.nl" rel="noreferrer" target="_blank">http://www.marin.nl</a><br>
<br>
MARIN news: <a href="http://www.marin.nl/web/News/News-items/Office-tool-aNySIM-integrated-into-realtime-onboard-software-1.htm" rel="noreferrer" target="_blank">
http://www.marin.nl/web/News/<wbr>News-items/Office-tool-aNySIM-<wbr>integrated-into-realtime-<wbr>onboard-software-1.htm</a><br>
<br>
</blockquote>
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-- <br>
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<div>What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead.<br>
-- Norbert Wiener</div>
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<div><a href="http://www.caam.rice.edu/~mk51/" target="_blank">https://www.cse.buffalo.edu/~knepley/</a><br>
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