[petsc-users] petsc-users Digest, Vol 112, Issue 141
Afrah Najib
afrah.nacib at gmail.com
Mon Apr 30 15:56:23 CDT 2018
This word is wrong burden ... pardon me ... I am sorry ... There is no
edit here
On 30 April 2018 at 22:31, <petsc-users-request at mcs.anl.gov> wrote:
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> 1. Fwd: PDSLin hybrid solver performance with PETSc (Afrah Najib)
>
>
> ----------------------------------------------------------------------
>
> Message: 1
> Date: Mon, 30 Apr 2018 22:31:04 +0300
> From: Afrah Najib <afrah.nacib at gmail.com>
> To: PETSc <petsc-users at mcs.anl.gov>
> Subject: [petsc-users] Fwd: PDSLin hybrid solver performance with
> PETSc
> Message-ID:
> <CAPo_9=D8p0fC2fzqHCeMPg2DyZU-vdxEZ-FaYiHU_od-togaHA at mail.
> gmail.com>
> Content-Type: text/plain; charset="utf-8"
>
> I beg your burden, how can I use those tools of PETSc in PDSLin program ...
>
> valgrind is working in such "mpirun -n $n valgrind ./dtest_pdslin
> $inputFIle $matrixFile "
>
> but these options are not working
>
> ---------- Forwarded message ----------
> From: Smith, Barry F. <bsmith at mcs.anl.gov>
> Date: 30 April 2018 at 18:39
> Subject: Re: [petsc-users] PDSLin hybrid solver performance with PETSc
> To: Afrah Najib <afrah.nacib at gmail.com>
> Cc: PETSc <petsc-users at mcs.anl.gov>, "Xiaoye S. Li" <xsli at lbl.gov>,
> Ichitaro Yamazaki <iyamazak at icl.utk.edu>, Ichitaro Yamazaki <
> ic.yamazaki at gmail.com>
>
>
>
> Looks like there is a divide by a variable that is zero in pdslin where
> the code doesn't first check if the value is not zero.
>
> You can try using the option -start_in_debugger and in each debugger
> window use the debugger option to catch floating point exceptions and then
> type cont to continue the run. Yes this is annoying when you have so many
> debugger windows but is the only simple way to determine immediately the
> line of code that is producing the floating point exception.
>
> Barry
>
>
> > On Apr 30, 2018, at 6:20 AM, Afrah Najib <afrah.nacib at gmail.com> wrote:
> >
> > Hi all,
> >
> > I am testing PDSLin hybrid solver performance with PETSc krylov method on
> a SPD matrix called audik_1 matrix(format is ijv full matrix ordered by
> rows)
> > https://sparse.tamu.edu/GHS_psdef/audikw_1
> >
> > I am also running on cluster with Intel(R) Xeon(R) CPU E5-2680 v4 @
> 2.40GHz processor and 28 core , 128 ; 512GB per node
> >
> > but it takes a lot of time for Schur complement factorization.
> >
> > Compiler Subdomains processors Precond TmatrixPartition
> TmatrixDist Tfactorise TcompApproSchur TprepApproSchur
> Tfactoschur Tprecond_Total Tsolve
> > gcc 8 128 Sparse 23.49532 0.6009915 6.059546
> 212.8243 0.04027608 38.74885 257.6796
> 13.69609
> > gcc 8 16 Sparse 11.864 0.4385703 27.23499
> 1390.153 0.5523289 55.20706 1473.207 4.213825
> > gcc 8 32 Sparse 9.912792 0.2592737 16.79125
> 934.3571 0.2372452 49.39175 1000.813 37.2029
> > gcc 8 64 Sparse 12.61929 0.2336042 8.2316
> 632.839 0.1113939 52.21551 693.4153 13.94034
> >
> > My PETSc in stallation configuration is like this:
> >
> > export PETSC_DIR=/X/petsc
> > export PETSC_ARCH=arch-real
> >
> > ./configure PETSC_DIR=/X/petsc \
> > prefix=/X/petsc/petsc-install \
> > PETSC_ARCH=arch-real \
> > --with-debugging=0 \
> > --with-cc=/Y/progs/openmpi/openmpi-3.0.0-gcc-7.1.0/bin/mpicc \
> > --with-cxx=/Y/progs/openmpi/openmpi-3.0.0-gcc-7.1.0/bin/mpicxx \
> > --with-fc=/Y/progs/openmpi/openmpi-3.0.0-gcc-7.1.0/bin/mpif90 \
> > --with-valgrind=1 \
> > --with-valgrind-dir=/X/root/usr/local/valgrind-3.13.0 \
> > --with-hwloc-dir=/X/root/usr/local/hwloc-1.11.9 \
> > --with-blas-lapack-dir=/Y/progs/intel/compilers_and_
> libraries_2017.0.098/linux/mkl/lib/intel64.
> >
> > My slurm scrpt content is like this:
> >
> > #!/bin/bash -l
> > #SBATCH -J "Paudik16"
> > #SBATCH -A X
> > #SBATCH -p X
> > #SBATCH --exclusive
> > #SBATCH -o Paudik_8_2_16.%j.out
> > #SBATCH -e Paudik_8_2_16.%j.err
> >
> > #SBATCH -N 8
> > #SBATCH --ntasks-per-node=2
> > #SBATCH --cpus-per-task=1
> >
> > export KMP_AFFINITY=verbose,disabled
> > export MKL_NUM_THREADS=${SLURM_CPUS_PER_TASK}
> > export OMP_NUM_THREADS=${SLURM_CPUS_PER_TASK}
> >
> > module purge
> >
> > module load gcc/7.1.0
> > module load mpi/openmpi-3.0.0-gcc-7.1.0
> > module load intel/mkl_2017.0.098
> >
> > file=input.in
> > matrixFile=~/dataDir/ijv/audikw_1.ijv
> >
> > mpirun -np $SLURM_NTASKS ./dtest_pdslin $file $matrixFile
> >
> >
> >
> > I attached an output of one file along with the input configuration of
> PDSLin.
> >
> > Any idea of how to enhance these results.
> >
> > Note in PDSLin, I tried with parallel Schur permutation but I got the
> following error :
> >
> > [1]PETSC ERROR: ------------------------------
> ------------------------------------------
> > [1]PETSC ERROR: Caught signal number 8 FPE: Floating Point
> E/Xception,probably divide by zero
> > [1]PETSC ERROR: Try option -start_in_debugger or
> -on_error_attach_debugger
> > [1]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/
> documentation/faq.html#valgrind
> > [1]PETSC ERROR: or try http://valgrind.org on GNU/linu/X and Apple Mac
> OS
> /X to find memory corruption errors
> > [1]PETSC ERROR: configure using --with-debugging=yes, recompile, link,
> and run
> > [1]PETSC ERROR: to get more information on the crash.
> > [1]PETSC ERROR: --------------------- Error Message
> --------------------------------------------------------------
> > ------------------------------------------------------------
> --------------
> > MPI_ABORT was invoked on rank 1 in communicator MPI_COMM_WORLD
> > with errorcode 59.
> >
> > NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
> > You may or may not see output from other processes, depending on
> > e/Xactly when Open MPI kills them.
> > ------------------------------------------------------------
> --------------
> > [13]PETSC ERROR: ------------------------------
> ------------------------------------------
> > [13]PETSC ERROR: Caught signal number 8 FPE: Floating Point
> E/Xception,probably divide by zero
> > [13]PETSC ERROR: Try option -start_in_debugger or
> -on_error_attach_debugger
> > [13]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/
> documentation/faq.html#valgrind
> > [13]PETSC ERROR: or try http://valgrind.org on GNU/linu/X and Apple Mac
> OS /X to find memory corruption errors
> > [13]PETSC ERROR: configure using --with-debugging=yes, recompile, link,
> and run
> > [13]PETSC ERROR: to get more information on the crash.
> > [11]PETSC ERROR: ------------------------------
> ------------------------------------------
> > [11]PETSC ERROR: Caught signal number 8 FPE: Floating Point
> E/Xception,probably divide by zero
> > [11]PETSC ERROR: Try option -start_in_debugger or
> -on_error_attach_debugger
> > [11]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/
> documentation/faq.html#valgrind
> > [11]PETSC ERROR: or try http://valgrind.org on GNU/linu/X and Apple Mac
> OS /X to find memory corruption errors
> > [11]PETSC ERROR: configure using --with-debugging=yes, recompile, link,
> and run
> > [11]PETSC ERROR: to get more information on the crash.
> > [3]PETSC ERROR: ------------------------------
> ------------------------------------------
> > [3]PETSC ERROR: Caught signal number 8 FPE: Floating Point
> E/Xception,probably divide by zero
> > [3]PETSC ERROR: Try option -start_in_debugger or
> -on_error_attach_debugger
> > [3]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/
> documentation/faq.html#valgrind
> > [3]PETSC ERROR: or try http://valgrind.org on GNU/linu/X and Apple Mac
> OS
> /X to find memory corruption errors
> > [3]PETSC ERROR: configure using --with-debugging=yes, recompile, link,
> and run
> > [3]PETSC ERROR: to get more information on the crash.
> > [3]PETSC ERROR: --------------------- Error Message
> --------------------------------------------------------------
> > [3]PETSC ERROR: Signal received
> > [3]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html
> for trouble shooting.
> > [3]PETSC ERROR: Petsc Release Version 3.9.0, unknown
> > [3]PETSC ERROR: [9]PETSC ERROR: ------------------------------
> ------------------------------------------
> > [9]PETSC ERROR: Caught signal number 8 FPE: Floating Point
> E/Xception,probably divide by zero
> > [9]PETSC ERROR: Try option -start_in_debugger or
> -on_error_attach_debugger
> > [9]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/
> documentation/faq.html#valgrind
> > [9]PETSC ERROR: or try http://valgrind.org on GNU/linu/X and Apple Mac
> OS
> /X to find memory corruption errors
> > [9]PETSC ERROR: configure using --with-debugging=yes, recompile, link,
> and run
> > [9]PETSC ERROR: to get more information on the crash.
> > [7]PETSC ERROR: ------------------------------
> ------------------------------------------
> > [7]PETSC ERROR: Caught signal number 8 FPE: Floating Point
> E/Xception,probably divide by zero
> > [7]PETSC ERROR: Try option -start_in_debugger or
> -on_error_attach_debugger
> > [7]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/
> documentation/faq.html#valgrind
> > [7]PETSC ERROR: or try http://valgrind.org on GNU/linu/X and Apple Mac
> OS
> /X to find memory corruption errors
> > [7]PETSC ERROR: configure using --with-debugging=yes, recompile, link,
> and run
> > [7]PETSC ERROR: to get more information on the crash.
> > [5]PETSC ERROR: ------------------------------
> ------------------------------------------
> > [5]PETSC ERROR: Caught signal number 8 FPE: Floating Point
> E/Xception,probably divide by zero
> > [5]PETSC ERROR: Try option -start_in_debugger or
> -on_error_attach_debugger
> > [5]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/
> documentation/faq.html#valgrind
> > [5]PETSC ERROR: or try http://valgrind.org on GNU/linu/X and Apple Mac
> OS
> /X to find memory corruption errors
> > [5]PETSC ERROR: configure using --with-debugging=yes, recompile, link,
> and run
> > [5]PETSC ERROR: to get more information on the crash.
> > [5]PETSC ERROR: --------------------- Error Message
> --------------------------------------------------------------
> > [5]PETSC ERROR: Signal received
> > [5]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html
> for trouble shooting.
> > [5]PETSC ERROR: Petsc Release Version 3.9.0, unknown
> > [5]PETSC ERROR: [15]PETSC ERROR: ------------------------------
> ------------------------------------------
> > [15]PETSC ERROR: Caught signal number 8 FPE: Floating Point
> E/Xception,probably divide by zero
> > [15]PETSC ERROR: Try option -start_in_debugger or
> -on_error_attach_debugger
> > [15]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/
> documentation/faq.html#valgrind
> > [15]PETSC ERROR: [13]PETSC ERROR: --------------------- Error Message
> --------------------------------------------------------------
> > [13]PETSC ERROR: Signal received
> > [13]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html
> for trouble shooting.
> > [13]PETSC ERROR: Petsc Release Version 3.9.0, unknown
> > [13]PETSC ERROR: ./dtest_pdslin on a named s060 by afarea Mon Apr 30
> 05:29:53 2018
> > [13]PETSC ERROR: Configure options PETSC_DIR=/X/petsc
> prefi/X=/X/petsc/petsc-install PETSC_ARCH=arch-real --with-debugging=0
> --with-cc=/okyanus/progs/openmpi/openmpi-3.0.0-gcc-7.1.0/bin/mpicc
> --with-c/X/X=/okyanus/progs/openmpi/openmpi-3.0.0-gcc-7.1.0/bin/mpic/X/X
> --with-fc=/okyanus/progs/openmpi/openmpi-3.0.0-gcc-7.1.0/bin/mpif90
> --with-valgrind=1 --with-valgrind-dir=/X/root/usr/local/valgrind-3.13.0
> --with-hwloc-dir=/X/root/usr/local/hwloc-1.11.9 --with-blaslapack-dir=/
> okyanus/progs/intel/compilers_and_libraries_2017.0.098/linu/
> X/mkl/lib/intel64
> > [11]PETSC ERROR: --------------------- Error Message
> --------------------------------------------------------------
> > [11]PETSC ERROR: Signal received
> > [11]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html
> for trouble shooting.
> > [11]PETSC ERROR: Petsc Release Version 3.9.0, unknown
> > [11]PETSC ERROR: ./dtest_pdslin on a named s054 by afarea Mon Apr 30
> 05:29:53 2018
> > [11]PETSC ERROR: Configure options PETSC_DIR=/X/petsc
> prefi/X=/X/petsc/petsc-install PETSC_ARCH=arch-real --with-debugging=0
> --with-cc=/okyanus/progs/openmpi/openmpi-3.0.0-gcc-7.1.0/bin/mpicc
> --with-c/X/X=/okyanus/progs/openmpi/openmpi-3.0.0-gcc-7.1.0/bin/mpic/X/X
> --with-fc=/okyanus/progs/openmpi/openmpi-3.0.0-gcc-7.1.0/bin/mpif90
> --with-valgrind=1 --with-valgrind-dir=/X/root/usr/local/valgrind-3.13.0
> --with-hwloc-dir=/X/root/usr/local/hwloc-1.11.9 --with-blaslapack-dir=/
> okyanus/progs/intel/compilers_and_libraries_2017.0.098/linu/
> X/mkl/lib/intel64
> > ./dtest_pdslin on a named s034 by afarea Mon Apr 30 05:29:53 2018
> > [3]PETSC ERROR: Configure options PETSC_DIR=/X/petsc
> prefi/X=/X/petsc/petsc-install PETSC_ARCH=arch-real --with-debugging=0
> --with-cc=/okyanus/progs/openmpi/openmpi-3.0.0-gcc-7.1.0/bin/mpicc
> --with-c/X/X=/okyanus/progs/openmpi/openmpi-3.0.0-gcc-7.1.0/bin/mpic/X/X
> --with-fc=/okyanus/progs/openmpi/openmpi-3.0.0-gcc-7.1.0/bin/mpif90
> --with-valgrind=1 --with-valgrind-dir=/X/root/usr/local/valgrind-3.13.0
> --with-hwloc-dir=/X/root/usr/local/hwloc-1.11.9 --with-blaslapack-dir=/
> okyanus/progs/intel/compilers_and_libraries_2017.0.098/linu/
> X/mkl/lib/intel64
> > [3]PETSC ERROR: #1 User provided function() line 0 in unknown file
> > [9]PETSC ERROR: --------------------- Error Message
> --------------------------------------------------------------
> > [9]PETSC ERROR: Signal received
> > [9]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html
> for trouble shooting.
> > [9]PETSC ERROR: Petsc Release Version 3.9.0, unknown
> > [9]PETSC ERROR: ./dtest_pdslin on a named s044 by afarea Mon Apr 30
> 05:29:53 2018
> > [9]PETSC ERROR: Configure options PETSC_DIR=/X/petsc
> prefi/X=/X/petsc/petsc-install PETSC_ARCH=arch-real --with-debugging=0
> --with-cc=/okyanus/progs/openmpi/openmpi-3.0.0-gcc-7.1.0/bin/mpicc
> --with-c/X/X=/okyanus/progs/openmpi/openmpi-3.0.0-gcc-7.1.0/bin/mpic/X/X
> --with-fc=/okyanus/progs/openmpi/openmpi-3.0.0-gcc-7.1.0/bin/mpif90
> --with-valgrind=1 --with-valgrind-dir=/X/root/usr/local/valgrind-3.13.0
> --with-hwloc-dir=/X/root/usr/local/hwloc-1.11.9 --with-blaslapack-dir=/
> okyanus/progs/intel/compilers_and_libraries_2017.0.098/linu/
> X/mkl/lib/intel64
> > [7]PETSC ERROR: --------------------- Error Message
> --------------------------------------------------------------
> > [7]PETSC ERROR: Signal received
> > [7]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html
> for trouble shooting.
> > [7]PETSC ERROR: Petsc Release Version 3.9.0, unknown
> > [7]PETSC ERROR: ./dtest_pdslin on a named s036 by afarea Mon Apr 30
> 05:29:53 2018
> > [7]PETSC ERROR: Configure options PETSC_DIR=/X/petsc
> prefi/X=/X/petsc/petsc-install PETSC_ARCH=arch-real --with-debugging=0
> --with-cc=/okyanus/progs/openmpi/openmpi-3.0.0-gcc-7.1.0/bin/mpicc
> --with-c/X/X=/okyanus/progs/openmpi/openmpi-3.0.0-gcc-7.1.0/bin/mpic/X/X
> --with-fc=/okyanus/progs/openmpi/openmpi-3.0.0-gcc-7.1.0/bin/mpif90
> --with-valgrind=1 --with-valgrind-dir=/X/root/usr/local/valgrind-3.13.0
> --with-hwloc-dir=/X/root/usr/local/hwloc-1.11.9 --with-blaslapack-dir=/
> okyanus/progs/intel/compilers_and_libraries_2017.0.098/linu/
> X/mkl/lib/intel64
> > [7]PETSC ERROR: #1 User provided function() line 0 in unknown file
> > ./dtest_pdslin on a named s035 by afarea Mon Apr 30 05:29:53 2018
> > [5]PETSC ERROR: Configure options PETSC_DIR=/X/petsc
> prefi/X=/X/petsc/petsc-install PETSC_ARCH=arch-real --with-debugging=0
> --with-cc=/okyanus/progs/openmpi/openmpi-3.0.0-gcc-7.1.0/bin/mpicc
> --with-c/X/X=/okyanus/progs/openmpi/openmpi-3.0.0-gcc-7.1.0/bin/mpic/X/X
> --with-fc=/okyanus/progs/openmpi/openmpi-3.0.0-gcc-7.1.0/bin/mpif90
> --with-valgrind=1 --with-valgrind-dir=/X/root/usr/local/valgrind-3.13.0
> --with-hwloc-dir=/X/root/usr/local/hwloc-1.11.9 --with-blaslapack-dir=/
> okyanus/progs/intel/compilers_and_libraries_2017.0.098/linu/
> X/mkl/lib/intel64
> > [5]PETSC ERROR: #1 User provided function() line 0 in unknown file
> > configure using --with-debugging=yes, recompile, link, and run
> > [15]PETSC ERROR: to get more information on the crash.
> > [15]PETSC ERROR: --------------------- Error Message
> --------------------------------------------------------------
> > [15]PETSC ERROR: Signal received
> > [15]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html
> for trouble shooting.
> > [15]PETSC ERROR: Petsc Release Version 3.9.0, unknown
> > [15]PETSC ERROR: ./dtest_pdslin on a named s071 by afarea Mon Apr 30
> 05:29:53 2018
> > [13]PETSC ERROR: #1 User provided function() line 0 in unknown file
> > [11]PETSC ERROR: #1 User provided function() line 0 in unknown file
> > [9]PETSC ERROR: #1 User provided function() line 0 in unknown file
> > [15]PETSC ERROR: Configure options PETSC_DIR=/X/petsc
> prefi/X=/X/petsc/petsc-install PETSC_ARCH=arch-real --with-debugging=0
> --with-cc=/okyanus/progs/openmpi/openmpi-3.0.0-gcc-7.1.0/bin/mpicc
> --with-c/X/X=/okyanus/progs/openmpi/openmpi-3.0.0-gcc-7.1.0/bin/mpic/X/X
> --with-fc=/okyanus/progs/openmpi/openmpi-3.0.0-gcc-7.1.0/bin/mpif90
> --with-valgrind=1 --with-valgrind-dir=/X/root/usr/local/valgrind-3.13.0
> --with-hwloc-dir=/X/root/usr/local/hwloc-1.11.9 --with-blaslapack-dir=/
> okyanus/progs/intel/compilers_and_libraries_2017.0.098/linu/
> X/mkl/lib/intel64
> > [15]PETSC ERROR: #1 User provided function() line 0 in unknown file
> > [1]PETSC ERROR: Signal received
> > [1]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html
> for trouble shooting.
> > [1]PETSC ERROR: Petsc Release Version 3.9.0, unknown
> > [1]PETSC ERROR: ./dtest_pdslin on a named f002 by afarea Mon Apr 30
> 05:29:53 2018
> > [1]PETSC ERROR: Configure options PETSC_DIR=/X/petsc
> prefi/X=/X/petsc/petsc-install PETSC_ARCH=arch-real --with-debugging=0
> --with-cc=/okyanus/progs/openmpi/openmpi-3.0.0-gcc-7.1.0/bin/mpicc
> --with-c/X/X=/okyanus/progs/openmpi/openmpi-3.0.0-gcc-7.1.0/bin/mpic/X/X
> --with-fc=/okyanus/progs/openmpi/openmpi-3.0.0-gcc-7.1.0/bin/mpif90
> --with-valgrind=1 --with-valgrind-dir=/X/root/usr/local/valgrind-3.13.0
> --with-hwloc-dir=/X/root/usr/local/hwloc-1.11.9 --with-blaslapack-dir=/
> okyanus/progs/intel/compilers_and_libraries_2017.0.098/linu/
> X/mkl/lib/intel64
> > [1]PETSC ERROR: #1 User provided function() line 0 in unknown file
> > [1]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html
> for trouble shooting.
> > [1]PETSC ERROR: Petsc Release Version 3.9.0, unknown
> > [1]PETSC ERROR: ./dtest_pdslin on a named f002 by afarea Mon Apr 30
> 05:29:53 2018
> > [1]PETSC ERROR: Configure options PETSC_DIR=/X/petsc
> prefi/X=/X/petsc/petsc-install PETSC_ARCH=arch-real --with-debugging=0
> --with-cc=/okyanus/progs/openmpi/openmpi-3.0.0-gcc-7.1.0/bin/mpicc
> --with-c/X/X=/okyanus/progs/openmpi/openmpi-3.0.0-gcc-7.1.0/bin/mpic/X/X
> --with-fc=/okyanus/progs/openmpi/openmpi-3.0.0-gcc-7.1.0/bin/mpif90
> --with-valgrind=1 --with-valgrind-dir=/X/root/usr/local/valgrind-3.13.0
> --with-hwloc-dir=/X/root/usr/local/hwloc-1.11.9 --with-blaslapack-dir=/
> okyanus/progs/intel/compilers_and_libraries_2017.0.098/linu/
> X/mkl/lib/intel64
> > [1]PETSC ERROR: #1 User provided function() line 0 in unknown file
> > [6]PETSC ERROR: ------------------------------
> ------------------------------------------
> > [6]PETSC ERROR: Caught signal number 15 Terminate: Some process (or the
> batch system) has told this process to end
> > [6]PETSC ERROR: Try option -start_in_debugger or
> -on_error_attach_debugger
> > [6]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/
> documentation/faq.html#valgrind
> > [6]PETSC ERROR: or try http://valgrind.org on GNU/linu/X and Apple Mac
> OS
> /X to find memory corruption errors
> > [6]PETSC ERROR: configure using --with-debugging=yes, recompile, link,
> and run
> > [6]PETSC ERROR: to get more information on the crash.
> > [6]PETSC ERROR: --------------------- Error Message
> --------------------------------------------------------------
> > [6]PETSC ERROR: Signal received
> > [6]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html
> for trouble shooting.
> > [6]PETSC ERROR: Petsc Release Version 3.9.0, unknown
> > [6]PETSC ERROR: ./dtest_pdslin on a named s036 by afarea Mon Apr 30
> 05:29:53 2018
> > [6]PETSC ERROR: Configure options PETSC_DIR=/X/petsc
> prefi/X=/X/petsc/petsc-install PETSC_ARCH=arch-real --with-debugging=0
> --with-cc=/okyanus/progs/openmpi/openmpi-3.0.0-gcc-7.1.0/bin/mpicc
> --with-c/X/X=/okyanus/progs/openmpi/openmpi-3.0.0-gcc-7.1.0/bin/mpic/X/X
> --with-fc=/okyanus/progs/openmpi/openmpi-3.0.0-gcc-7.1.0/bin/mpif90
> --with-valgrind=1 --with-valgrind-dir=/X/root/usr/local/valgrind-3.13.0
> --with-hwloc-dir=/X/root/usr/local/hwloc-1.11.9 --with-blaslapack-dir=/
> okyanus/progs/intel/compilers_and_libraries_2017.0.098/linu/
> X/mkl/lib/intel64
> > [6]PETSC ERROR: #1 User provided function() line 0 in unknown file
> > [4]PETSC ERROR: ------------------------------
> ------------------------------------------
> > [4]PETSC ERROR: Caught signal number 15 Terminate: Some process (or the
> batch system) has told this process to end
> > [4]PETSC ERROR: Try option -start_in_debugger or
> -on_error_attach_debugger
> > [4]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/
> documentation/faq.html#valgrind
> > [4]PETSC ERROR: or try http://valgrind.org on GNU/linu/X and Apple Mac
> OS
> /X to find memory corruption errors
> > [4]PETSC ERROR: configure using --with-debugging=yes, recompile, link,
> and run
> > [4]PETSC ERROR: to get more information on the crash.
> > [4]PETSC ERROR: --------------------- Error Message
> --------------------------------------------------------------
> > [4]PETSC ERROR: Signal received
> > [4]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html
> for trouble shooting.
> > [4]PETSC ERROR: Petsc Release Version 3.9.0, unknown
> > [4]PETSC ERROR: ./dtest_pdslin on a named s035 by afarea Mon Apr 30
> 05:29:53 2018
> > [4]PETSC ERROR: Petsc Release Version 3.9.0, unknown
> > [4]PETSC ERROR: ./dtest_pdslin on a named s035 by afarea Mon Apr 30
> 05:29:53 2018
> > [4]PETSC ERROR: Configure options PETSC_DIR=/X/petsc
> prefi/X=/X/petsc/petsc-install PETSC_ARCH=arch-real --with-debugging=0
> --with-cc=/okyanus/progs/openmpi/openmpi-3.0.0-gcc-7.1.0/bin/mpicc
> --with-c/X/X=/okyanus/progs/openmpi/openmpi-3.0.0-gcc-7.1.0/bin/mpic/X/X
> --with-fc=/okyanus/progs/openmpi/openmpi-3.0.0-gcc-7.1.0/bin/mpif90
> --with-valgrind=1 --with-valgrind-dir=/X/root/usr/local/valgrind-3.13.0
> --with-hwloc-dir=/X/root/usr/local/hwloc-1.11.9 --with-blaslapack-dir=/
> okyanus/progs/intel/compilers_and_libraries_2017.0.098/linu/
> X/mkl/lib/intel64
> > [4]PETSC ERROR: #1 User provided function() line 0 in unknown file
> > [0]PETSC ERROR: ------------------------------
> ------------------------------------------
> > [0]PETSC ERROR: Caught signal number 15 Terminate: Some process (or the
> batch system) has told this process to end
> > [0]PETSC ERROR: Try option -start_in_debugger or
> -on_error_attach_debugger
> > [0]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/
> documentation/faq.html#valgrind
> > [0]PETSC ERROR: or try http://valgrind.org on GNU/linu/X and Apple Mac
> OS
> /X to find memory corruption errors
> > [0]PETSC ERROR: configure using --with-debugging=yes, recompile, link,
> and run
> > [0]PETSC ERROR: to get more information on the crash.
> > [0]PETSC ERROR: --------------------- Error Message
> --------------------------------------------------------------
> > [0]PETSC ERROR: Signal received
> > [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html
> for trouble shooting.
> > [0]PETSC ERROR: Petsc Release Version 3.9.0, unknown
> > [0]PETSC ERROR: ./dtest_pdslin on a named f002 by afarea Mon Apr 30
> 05:29:53 2018
> > [0]PETSC ERROR: Configure options PETSC_DIR=/X/petsc
> prefi/X=/X/petsc/petsc-install PETSC_ARCH=arch-real --with-debugging=0
> --with-cc=/okyanus/progs/openmpi/openmpi-3.0.0-gcc-7.1.0/bin/mpicc
> --with-c/X/X=/okyanus/progs/openmpi/openmpi-3.0.0-gcc-7.1.0/bin/mpic/X/X
> --with-fc=/okyanus/progs/openmpi/openmpi-3.0.0-gcc-7.1.0/bin/mpif90
> --with-valgrind=1 --with-valgrind-dir=/X/root/usr/local/valgrind-3.13.0
> --with-hwloc-dir=/X/root/usr/local/hwloc-1.11.9 --with-blaslapack-dir=/
> okyanus/progs/intel/compilers_and_libraries_2017.0.098/linu/
> X/mkl/lib/intel64
> > [0]PETSC ERROR: #1 User provided function() line 0 in unknown file
> > [10]PETSC ERROR: ------------------------------
> ------------------------------------------
> > [10]PETSC ERROR: Caught signal number 15 Terminate: Some process (or the
> batch system) has told this process to end
> > [10]PETSC ERROR: Try option -start_in_debugger or
> -on_error_attach_debugger
> > [10]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/
> documentation/faq.html#valgrind
> > [10]PETSC ERROR: or try http://valgrind.org on GNU/linu/X and Apple Mac
> OS /X to find memory corruption errors
> > [10]PETSC ERROR: configure using --with-debugging=yes, recompile, link,
> and run
> > [10]PETSC ERROR: to get more information on the crash.
> > [10]PETSC ERROR: --------------------- Error Message
> --------------------------------------------------------------
> > [10]PETSC ERROR: Signal received
> > [10]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html
> for trouble shooting.
> > [10]PETSC ERROR: Petsc Release Version 3.9.0, unknown
> > [10]PETSC ERROR: ./dtest_pdslin on a named s054 by afarea Mon Apr 30
> 05:29:53 2018
> >
> > [8]PETSC ERROR: ./dtest_pdslin on a named s044 by afarea Mon Apr 30
> 05:29:53 2018
> > [8]PETSC ERROR: Configure options PETSC_DIR=/X/petsc
> prefi/X=/X/petsc/petsc-install PETSC_ARCH=arch-real --with-debugging=0
> --with-cc=/okyanus/progs/openmpi/openmpi-3.0.0-gcc-7.1.0/bin/mpicc
> --with-c/X/X=/okyanus/progs/openmpi/openmpi-3.0.0-gcc-7.1.0/bin/mpic/X/X
> --with-fc=/okyanus/progs/openmpi/openmpi-3.0.0-gcc-7.1.0/bin/mpif90
> --with-valgrind=1 --with-valgrind-dir=/X/root/usr/local/valgrind-3.13.0
> --with-hwloc-dir=/X/root/usr/local/hwloc-1.11.9 --with-blaslapack-dir=/
> okyanus/progs/intel/compilers_and_libraries_2017.0.098/linu/
> X/mkl/lib/intel64
> > [8]PETSC ERROR: #1 User provided function() line 0 in unknown file
> > [14]PETSC ERROR: ------------------------------
> ------------------------------------------
> > [14]PETSC ERROR: Caught signal number 15 Terminate: Some process (or the
> batch system) has told this process to end
> > [14]PETSC ERROR: Try option -start_in_debugger or
> -on_error_attach_debugger
> > [14]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/
> documentation/faq.html#valgrind
> > [14]PETSC ERROR: or try http://valgrind.org on GNU/linu/X and Apple Mac
> OS /X to find memory corruption errors
> > [14]PETSC ERROR: configure using --with-debugging=yes, recompile, link,
> and run
> > [14]PETSC ERROR: to get more information on the crash.
> > [14]PETSC ERROR: --------------------- Error Message
> --------------------------------------------------------------
> > [14]PETSC ERROR: Signal received
> > [14]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html
> for trouble shooting.
> > [14]PETSC ERROR: Petsc Release Version 3.9.0, unknown
> > [14]PETSC ERROR: ./dtest_pdslin on a named s071 by afarea Mon Apr 30
> 05:29:53 2018
> > [14]PETSC ERROR: Configure options PETSC_DIR=/X/petsc
> prefi/X=/X/petsc/petsc-install PETSC_ARCH=arch-real --with-debugging=0
> --with-cc=/okyanus/progs/openmpi/openmpi-3.0.0-gcc-7.1.0/bin/mpicc
> --with-c/X/X=/okyanus/progs/openmpi/openmpi-3.0.0-gcc-7.1.0/bin/mpic/X/X
> --with-fc=/okyanus/progs/openmpi/openmpi-3.0.0-gcc-7.1.0/bin/mpif90
> --with-valgrind=1 --with-valgrind-dir=/X/root/usr/local/valgrind-3.13.0
> --with-hwloc-dir=/X/root/usr/local/hwloc-1.11.9 --with-blaslapack-dir=/
> okyanus/progs/intel/compilers_and_libraries_2017.0.098/linu/
> X/mkl/lib/intel64
> > [14]PETSC ERROR: #1 User provided function() line 0 in unknown file
> > [15]PETSC ERROR: ------------------------------
> ------------------------------------------
> > [15]PETSC ERROR: Caught signal number 15 Terminate: Some process (or the
> batch system) has told this process to end
> > [15]PETSC ERROR: Try option -start_in_debugger or
> -on_error_attach_debugger
> > [15]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/
> documentation/faq.html#valgrind
> > [15]PETSC ERROR: or try http://valgrind.org on GNU/linu/X and Apple Mac
> OS /X to find memory corruption errors
> > [15]PETSC ERROR: configure using --with-debugging=yes, recompile, link,
> and run
> > [15]PETSC ERROR: to get more information on the crash.
> > [15]PETSC ERROR: --------------------- Error Message
> --------------------------------------------------------------
> > [15]PETSC ERROR: Signal received
> > [15]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html
> for trouble shooting.
> > [15]PETSC ERROR: Petsc Release Version 3.9.0, unknown
> > [15]PETSC ERROR: ./dtest_pdslin on a named s071 by afarea Mon Apr 30
> 05:29:53 2018
> > [15]PETSC ERROR: #2 User provided function() line 0 in unknown file
> > [2]PETSC ERROR: ------------------------------
> ------------------------------------------
> > [2]PETSC ERROR: Caught signal number 15 Terminate: Some process (or the
> batch system) has told this process to end
> > [2]PETSC ERROR: Try option -start_in_debugger or
> -on_error_attach_debugger
> > [2]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/
> documentation/faq.html#valgrind
> > [2]PETSC ERROR: or try http://valgrind.org on GNU/linu/X and Apple Mac
> OS
> /X to find memory corruption errors
> > [2]PETSC ERROR: configure using --with-debugging=yes, recompile, link,
> and run
> > [2]PETSC ERROR: to get more information on the crash.
> > [2]PETSC ERROR: --------------------- Error Message
> --------------------------------------------------------------
> > [2]PETSC ERROR: Signal received
> > [2]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html
> for trouble shooting.
> > [2]PETSC ERROR: Petsc Release Version 3.9.0, unknown
> > [2]PETSC ERROR: ./dtest_pdslin on a named s034 by afarea Mon Apr 30
> 05:29:53 2018
> > [2]PETSC ERROR: Configure options PETSC_DIR=/X/petsc
> prefi/X=/X/petsc/petsc-install PETSC_ARCH=arch-real --with-debugging=0
> --with-cc=/okyanus/progs/openmpi/openmpi-3.0.0-gcc-7.1.0/bin/mpicc
> --with-c/X/X=/okyanus/progs/openmpi/openmpi-3.0.0-gcc-7.1.0/bin/mpic/X/X
> --with-fc=/okyanus/progs/openmpi/openmpi-3.0.0-gcc-7.1.0/bin/mpif90
> --with-valgrind=1 --with-valgrind-dir=/X/root/usr/local/valgrind-3.13.0
> --with-hwloc-dir=/X/root/usr/local/hwloc-1.11.9 --with-blaslapack-dir=/
> okyanus/progs/intel/compilers_and_libraries_2017.0.098/linu/
> X/mkl/lib/intel64
> > [2]PETSC ERROR: #1 User provided function() line 0 in unknown file
> > [3]PETSC ERROR: ------------------------------
> ------------------------------------------
> > [3]PETSC ERROR: Caught signal number 15 Terminate: Some process (or the
> batch system) has told this process to end
> > [3]PETSC ERROR: Try option -start_in_debugger or
> -on_error_attach_debugger
> > [3]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/
> documentation/faq.html#valgrind
> > [3]PETSC ERROR: or try http://valgrind.org on GNU/linu/X and Apple Mac
> OS
> /X to find memory corruption errors
> > [3]PETSC ERROR: configure using --with-debugging=yes, recompile, link,
> and run
> > [3]PETSC ERROR: to get more information on the crash.
> > [3]PETSC ERROR: --------------------- Error Message
> --------------------------------------------------------------
> > [3]PETSC ERROR: Signal received
> > [3]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html
> for trouble shooting.
> > [3]PETSC ERROR: Petsc Release Version 3.9.0, unknown
> > [3]PETSC ERROR: ./dtest_pdslin on a named s034 by afarea Mon Apr 30
> 05:29:53 2018
> > [3]PETSC ERROR: Configure options PETSC_DIR=/X/petsc
> prefi/X=/X/petsc/petsc-install PETSC_ARCH=arch-real --with-debugging=0
> --with-cc=/okyanus/progs/openmpi/openmpi-3.0.0-gcc-7.1.0/bin/mpicc
> --with-c/X/X=/okyanus/progs/openmpi/openmpi-3.0.0-gcc-7.1.0/bin/mpic/X/X
> --with-fc=/okyanus/progs/openmpi/openmpi-3.0.0-gcc-7.1.0/bin/mpif90
> --with-valgrind=1 --with-valgrind-dir=/X/root/usr/local/valgrind-3.13.0
> --with-hwloc-dir=/X/root/usr/local/hwloc-1.11.9 --with-blaslapack-dir=/
> okyanus/progs/intel/compilers_and_libraries_2017.0.098/linu/
> X/mkl/lib/intel64
> > [3]PETSC ERROR: #2 User provided function() line 0 in unknown file
> > [f002:38724] 17 more processes have sent help message help-mpi-api.t/Xt /
> mpi-abort
> > [f002:38724] Set MCA parameter "orte_base_help_aggregate" to 0 to see all
> help / error messages
> >
> >
> > <Paudik_8_2_16.100234.out>
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