[petsc-users] Cuda libraries and DMDA
Manuel Valera
mvalera-w at sdsu.edu
Mon Apr 9 20:13:38 CDT 2018
Oh ok, thanks Matt,
I think the problem is that i am not using DMCreateMatrix at all but a
regular MatCreate, i will follow ex44f and get back to you,
I am calling DMSetFromOptions right after creating the DMDA, way before the
matrix is created,
On Mon, Apr 9, 2018 at 5:57 PM, Matthew Knepley <knepley at gmail.com> wrote:
> On Mon, Apr 9, 2018 at 7:55 PM, Manuel Valera <mvalera-w at sdsu.edu> wrote:
>
>> On Mon, Apr 9, 2018 at 4:53 PM, Matthew Knepley <knepley at gmail.com>
>> wrote:
>>
>>> On Mon, Apr 9, 2018 at 7:52 PM, Manuel Valera <mvalera-w at sdsu.edu>
>>> wrote:
>>>
>>>> Ok thanks, i'm learning more every day,
>>>>
>>>> I still get the same error, i am running with -dm_vec_type viennacl
>>>> -dm_mat_type aijviennacl -pc_type saviennacl
>>>>
>>>
>>> 1) Are you calling DMSetFromOptions()?
>>>
>>
>> Yes, i get:
>>
>
> Let me be more precise. For the DMDA you are using, you must call
> DMSetFromOptions() before you call
> DMCreateMatrix (or before its called automatically), in order to get the
> Mat type you want from the command line.
> If you do not get the right type, you know this has not happened.
>
> Matt
>
>
>> [valera at node50 Src]$ grep DMSetFromOptions *.f90
>> DMDAmetrics.f90:call DMSetFromOptions(daDerivs,ierr)
>> dmdaobjs.f90: call DMSetFromOptions(daGrid,ierr)
>> dmdaobjs.f90: call DMSetFromOptions(daSingle,ierr)
>> dmdaobjs.f90: call DMSetFromOptions(daConstants,ierr)
>> dmdaobjs.f90: call DMSetFromOptions(daSgs,ierr)
>> dmdaobjs.f90: call DMSetFromOptions(daLaplacian,ierr)
>> dmdaobjs.f90: call DMSetFromOptions(daMetrics,ierr)
>> dmdaobjs.f90: call DMSetFromOptions(daCenters,ierr)
>> dmdaobjs.f90: call DMSetFromOptions(daPressureCoeffs,ierr)
>> dmdaobjs.f90: call DMSetFromOptions(daDivSgs,ierr)
>> dmdaobjs.f90: call DMSetFromOptions(daDummy,ierr)
>> dmdaobjs.f90: call DMSetFromOptions(daVelocities,ierr)
>> dmdaobjs.f90: call DMSetFromOptions(daScalars,ierr)
>> dmdaobjs.f90: call DMSetFromOptions(daDensity,ierr)
>> fileIO.f90: call DMSetFromOptions(daWriteCenters,ierr)
>> fileIO.f90: call DMSetFromOptions(daWriteUgrid,ierr)
>> fileIO.f90: call DMSetFromOptions(daWriteVgrid,ierr)
>> fileIO.f90: call DMSetFromOptions(daWriteWgrid,ierr)
>> romsmodule.f90: call DMSetFromOptions(daSeqEastWest_u,ierrp)
>> romsmodule.f90: call DMSetFromOptions(daSeqEastWest_v,ierrp)
>> romsmodule.f90: call DMSetFromOptions(daSeqEastWest_w,ierrp)
>> seamountbeamroms.f90: call DMSetFromOptions(daMinPlaneZ,i
>> err)
>>
>>
>>>
>>> 2) Does your DM have a prefix?
>>>
>>
>> What does this mean? the one used in the KSPSolve is daDummy
>>
>> Thanks,
>>
>>
>>
>>
>>>
>>> Matt
>>>
>>>
>>>> The error:
>>>>
>>>> [0]PETSC ERROR: --------------------- Error Message
>>>> --------------------------------------------------------------
>>>> [0]PETSC ERROR: No support for this operation for this object type
>>>> [0]PETSC ERROR: Currently only handles ViennaCL matrices
>>>> [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html
>>>> for trouble shooting.
>>>> [0]PETSC ERROR: Petsc Development GIT revision: v3.9-13-g05d412b GIT
>>>> Date: 2018-04-09 08:39:52 -0500
>>>> [0]PETSC ERROR: ./gcmBEAM on a cuda-debug named node50 by valera Mon
>>>> Apr 9 16:50:21 2018
>>>> [0]PETSC ERROR: Configure options PETSC_ARCH=cuda-debug
>>>> --download-mpich --with-blaslapack-dir=/usr/lib64 COPTFLAGS=-O2
>>>> CXXOPTFLAGS=-O2 FOPTFLAGS=-O2 --with-shared-libraries=1 --download-hypre
>>>> --with-debugging=1 --with-cuda=1 --CUDAFLAGS=-arch=sm_60 --download-hypre
>>>> --download-viennacl --download-cusp --download-cusp-commit=116b090
>>>> [0]PETSC ERROR: #1 PCSetUp_SAVIENNACL() line 47 in
>>>> /home/valera/petsc/src/ksp/pc/impls/saviennaclcuda/saviennacl.cu
>>>> [0]PETSC ERROR: #2 PCSetUp() line 923 in /home/valera/petsc/src/ksp/pc/
>>>> interface/precon.c
>>>> [0]PETSC ERROR: #3 KSPSetUp() line 381 in /home/valera/petsc/src/ksp/ksp
>>>> /interface/itfunc.c
>>>> [0]PETSC ERROR: --------------------- Error Message
>>>> --------------------------------------------------------------
>>>> [0]PETSC ERROR: No support for this operation for this object type
>>>> [0]PETSC ERROR: Currently only handles ViennaCL matrices
>>>> [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html
>>>> for trouble shooting.
>>>> [0]PETSC ERROR: Petsc Development GIT revision: v3.9-13-g05d412b GIT
>>>> Date: 2018-04-09 08:39:52 -0500
>>>> [0]PETSC ERROR: ./gcmBEAM on a cuda-debug named node50 by valera Mon
>>>> Apr 9 16:50:21 2018
>>>> [0]PETSC ERROR: Configure options PETSC_ARCH=cuda-debug
>>>> --download-mpich --with-blaslapack-dir=/usr/lib64 COPTFLAGS=-O2
>>>> CXXOPTFLAGS=-O2 FOPTFLAGS=-O2 --with-shared-libraries=1 --download-hypre
>>>> --with-debugging=1 --with-cuda=1 --CUDAFLAGS=-arch=sm_60 --download-hypre
>>>> --download-viennacl --download-cusp --download-cusp-commit=116b090
>>>> [0]PETSC ERROR: #4 PCSetUp_SAVIENNACL() line 47 in
>>>> /home/valera/petsc/src/ksp/pc/impls/saviennaclcuda/saviennacl.cu
>>>> [0]PETSC ERROR: #5 PCSetUp() line 923 in /home/valera/petsc/src/ksp/pc/
>>>> interface/precon.c
>>>> Finished setting up matrix objects
>>>> Exiting PrepareNetCDF
>>>> [0]PETSC ERROR: --------------------- Error Message
>>>> --------------------------------------------------------------
>>>> [0]PETSC ERROR: No support for this operation for this object type
>>>> [0]PETSC ERROR: Currently only handles ViennaCL matrices
>>>> [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html
>>>> for trouble shooting.
>>>> [0]PETSC ERROR: Petsc Development GIT revision: v3.9-13-g05d412b GIT
>>>> Date: 2018-04-09 08:39:52 -0500
>>>> [0]PETSC ERROR: ./gcmBEAM on a cuda-debug named node50 by valera Mon
>>>> Apr 9 16:50:21 2018
>>>> [0]PETSC ERROR: Configure options PETSC_ARCH=cuda-debug
>>>> --download-mpich --with-blaslapack-dir=/usr/lib64 COPTFLAGS=-O2
>>>> CXXOPTFLAGS=-O2 FOPTFLAGS=-O2 --with-shared-libraries=1 --download-hypre
>>>> --with-debugging=1 --with-cuda=1 --CUDAFLAGS=-arch=sm_60 --download-hypre
>>>> --download-viennacl --download-cusp --download-cusp-commit=116b090
>>>> [0]PETSC ERROR: #6 PCSetUp_SAVIENNACL() line 47 in
>>>> /home/valera/petsc/src/ksp/pc/impls/saviennaclcuda/saviennacl.cu
>>>> [0]PETSC ERROR: #7 PCSetUp() line 923 in /home/valera/petsc/src/ksp/pc/
>>>> interface/precon.c
>>>> [0]PETSC ERROR: #8 KSPSetUp() line 381 in /home/valera/petsc/src/ksp/ksp
>>>> /interface/itfunc.c
>>>> [0]PETSC ERROR: #9 KSPSolve() line 612 in /home/valera/petsc/src/ksp/ksp
>>>> /interface/itfunc.c
>>>> PETSC_Solve_Sol: 1.7096996307373047E-002
>>>> PETSC_Solve_SSG: 1.7321825027465820E-002
>>>> -.-.-.-.-
>>>> [0]PETSC ERROR: --------------------- Error Message
>>>> --------------------------------------------------------------
>>>> [0]PETSC ERROR: No support for this operation for this object type
>>>> [0]PETSC ERROR: Currently only handles ViennaCL matrices
>>>> [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html
>>>> for trouble shooting.
>>>> [0]PETSC ERROR: Petsc Development GIT revision: v3.9-13-g05d412b GIT
>>>> Date: 2018-04-09 08:39:52 -0500
>>>> [0]PETSC ERROR: ./gcmBEAM on a cuda-debug named node50 by valera Mon
>>>> Apr 9 16:50:21 2018
>>>> [0]PETSC ERROR: Configure options PETSC_ARCH=cuda-debug
>>>> --download-mpich --with-blaslapack-dir=/usr/lib64 COPTFLAGS=-O2
>>>> CXXOPTFLAGS=-O2 FOPTFLAGS=-O2 --with-shared-libraries=1 --download-hypre
>>>> --with-debugging=1 --with-cuda=1 --CUDAFLAGS=-arch=sm_60 --download-hypre
>>>> --download-viennacl --download-cusp --download-cusp-commit=116b090
>>>> [0]PETSC ERROR: #10 PCSetUp_SAVIENNACL() line 47 in
>>>> /home/valera/petsc/src/ksp/pc/impls/saviennaclcuda/saviennacl.cu
>>>> [0]PETSC ERROR: #11 PCSetUp() line 923 in /home/valera/petsc/src/ksp/pc/
>>>> interface/precon.c
>>>> [0]PETSC ERROR: #12 KSPSetUp() line 381 in
>>>> /home/valera/petsc/src/ksp/ksp/interface/itfunc.c
>>>> [0]PETSC ERROR: #13 KSPSolve() line 612 in
>>>> /home/valera/petsc/src/ksp/ksp/interface/itfunc.c
>>>> PETSC_Solve_Sol: 1.2702941894531250E-002
>>>> PETSC_Solve_SSG: 1.2929439544677734E-002
>>>> -.-.-.-.-
>>>> [0]PETSC ERROR: --------------------- Error Message
>>>> --------------------------------------------------------------
>>>> [0]PETSC ERROR: No support for this operation for this object type
>>>> [0]PETSC ERROR: Currently only handles ViennaCL matrices
>>>> [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html
>>>> for trouble shooting.
>>>> [0]PETSC ERROR: Petsc Development GIT revision: v3.9-13-g05d412b GIT
>>>> Date: 2018-04-09 08:39:52 -0500
>>>> [0]PETSC ERROR: ./gcmBEAM on a cuda-debug named node50 by valera Mon
>>>> Apr 9 16:50:21 2018
>>>> [0]PETSC ERROR: Configure options PETSC_ARCH=cuda-debug
>>>> --download-mpich --with-blaslapack-dir=/usr/lib64 COPTFLAGS=-O2
>>>> CXXOPTFLAGS=-O2 FOPTFLAGS=-O2 --with-shared-libraries=1 --download-hypre
>>>> --with-debugging=1 --with-cuda=1 --CUDAFLAGS=-arch=sm_60 --download-hypre
>>>> --download-viennacl --download-cusp --download-cusp-commit=116b090
>>>> [0]PETSC ERROR: #14 PCSetUp_SAVIENNACL() line 47 in
>>>> /home/valera/petsc/src/ksp/pc/impls/saviennaclcuda/saviennacl.cu
>>>> [0]PETSC ERROR: #15 PCSetUp() line 923 in /home/valera/petsc/src/ksp/pc/
>>>> interface/precon.c
>>>> [0]PETSC ERROR: #16 KSPSetUp() line 381 in
>>>> /home/valera/petsc/src/ksp/ksp/interface/itfunc.c
>>>> [0]PETSC ERROR: #17 KSPSolve() line 612 in
>>>> /home/valera/petsc/src/ksp/ksp/interface/itfunc.c
>>>> PETSC_Solve_Sol: 1.2219429016113281E-002
>>>> PETSC_Solve_SSG: 1.2480735778808594E-002
>>>> -.-.-.-.-
>>>> [0]PETSC ERROR: --------------------- Error Message
>>>> --------------------------------------------------------------
>>>> [0]PETSC ERROR: No support for this operation for this object type
>>>> [0]PETSC ERROR: Currently only handles ViennaCL matrices
>>>> [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html
>>>> for trouble shooting.
>>>> [0]PETSC ERROR: Petsc Development GIT revision: v3.9-13-g05d412b GIT
>>>> Date: 2018-04-09 08:39:52 -0500
>>>> [0]PETSC ERROR: ./gcmBEAM on a cuda-debug named node50 by valera Mon
>>>> Apr 9 16:50:21 2018
>>>> [0]PETSC ERROR: Configure options PETSC_ARCH=cuda-debug
>>>> --download-mpich --with-blaslapack-dir=/usr/lib64 COPTFLAGS=-O2
>>>> CXXOPTFLAGS=-O2 FOPTFLAGS=-O2 --with-shared-libraries=1 --download-hypre
>>>> --with-debugging=1 --with-cuda=1 --CUDAFLAGS=-arch=sm_60 --download-hypre
>>>> --download-viennacl --download-cusp --download-cusp-commit=116b090
>>>> [0]PETSC ERROR: #18 PCSetUp_SAVIENNACL() line 47 in
>>>> /home/valera/petsc/src/ksp/pc/impls/saviennaclcuda/saviennacl.cu
>>>> [0]PETSC ERROR: #19 PCSetUp() line 923 in /home/valera/petsc/src/ksp/pc/
>>>> interface/precon.c
>>>> [0]PETSC ERROR: #20 KSPSetUp() line 381 in
>>>> /home/valera/petsc/src/ksp/ksp/interface/itfunc.c
>>>> [0]PETSC ERROR: #21 KSPSolve() line 612 in
>>>> /home/valera/petsc/src/ksp/ksp/interface/itfunc.c
>>>> PETSC_Solve_Sol: 1.2894392013549805E-002
>>>> PETSC_Solve_SSG: 1.3124227523803711E-002
>>>> -.-.-.-.-
>>>> [0]PETSC ERROR: --------------------- Error Message
>>>> --------------------------------------------------------------
>>>> [0]PETSC ERROR: No support for this operation for this object type
>>>> [0]PETSC ERROR: Currently only handles ViennaCL matrices
>>>> [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html
>>>> for trouble shooting.
>>>> [0]PETSC ERROR: Petsc Development GIT revision: v3.9-13-g05d412b GIT
>>>> Date: 2018-04-09 08:39:52 -0500
>>>> [0]PETSC ERROR: ./gcmBEAM on a cuda-debug named node50 by valera Mon
>>>> Apr 9 16:50:21 2018
>>>> [0]PETSC ERROR: Configure options PETSC_ARCH=cuda-debug
>>>> --download-mpich --with-blaslapack-dir=/usr/lib64 COPTFLAGS=-O2
>>>> CXXOPTFLAGS=-O2 FOPTFLAGS=-O2 --with-shared-libraries=1 --download-hypre
>>>> --with-debugging=1 --with-cuda=1 --CUDAFLAGS=-arch=sm_60 --download-hypre
>>>> --download-viennacl --download-cusp --download-cusp-commit=116b090
>>>> [0]PETSC ERROR: #22 PCSetUp_SAVIENNACL() line 47 in
>>>> /home/valera/petsc/src/ksp/pc/impls/saviennaclcuda/saviennacl.cu
>>>> [0]PETSC ERROR: #23 PCSetUp() line 923 in /home/valera/petsc/src/ksp/pc/
>>>> interface/precon.c
>>>> [0]PETSC ERROR: #24 KSPSetUp() line 381 in
>>>> /home/valera/petsc/src/ksp/ksp/interface/itfunc.c
>>>> [0]PETSC ERROR: #25 KSPSolve() line 612 in
>>>> /home/valera/petsc/src/ksp/ksp/interface/itfunc.c
>>>> PETSC_Solve_Sol: 1.2183427810668945E-002
>>>> PETSC_Solve_SSG: 1.2410402297973633E-002
>>>> -.-.-.-.-
>>>> [0]PETSC ERROR: --------------------- Error Message
>>>> --------------------------------------------------------------
>>>> [0]PETSC ERROR: No support for this operation for this object type
>>>> [0]PETSC ERROR: Currently only handles ViennaCL matrices
>>>> [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html
>>>> for trouble shooting.
>>>> [0]PETSC ERROR: Petsc Development GIT revision: v3.9-13-g05d412b GIT
>>>> Date: 2018-04-09 08:39:52 -0500
>>>> [0]PETSC ERROR: ./gcmBEAM on a cuda-debug named node50 by valera Mon
>>>> Apr 9 16:50:21 2018
>>>> [0]PETSC ERROR: Configure options PETSC_ARCH=cuda-debug
>>>> --download-mpich --with-blaslapack-dir=/usr/lib64 COPTFLAGS=-O2
>>>> CXXOPTFLAGS=-O2 FOPTFLAGS=-O2 --with-shared-libraries=1 --download-hypre
>>>> --with-debugging=1 --with-cuda=1 --CUDAFLAGS=-arch=sm_60 --download-hypre
>>>> --download-viennacl --download-cusp --download-cusp-commit=116b090
>>>> [0]PETSC ERROR: #26 PCSetUp_SAVIENNACL() line 47 in
>>>> /home/valera/petsc/src/ksp/pc/impls/saviennaclcuda/saviennacl.cu
>>>> [0]PETSC ERROR: #27 PCSetUp() line 923 in /home/valera/petsc/src/ksp/pc/
>>>> interface/precon.c
>>>> [0]PETSC ERROR: #28 KSPSetUp() line 381 in
>>>> /home/valera/petsc/src/ksp/ksp/interface/itfunc.c
>>>> [0]PETSC ERROR: #29 KSPSolve() line 612 in
>>>> /home/valera/petsc/src/ksp/ksp/interface/itfunc.c
>>>> PETSC_Solve_Sol: 1.2546300888061523E-002
>>>> PETSC_Solve_SSG: 1.2778043746948242E-002
>>>> -.-.-.-.-
>>>> [0]PETSC ERROR: --------------------- Error Message
>>>> --------------------------------------------------------------
>>>> [0]PETSC ERROR: No support for this operation for this object type
>>>> [0]PETSC ERROR: Currently only handles ViennaCL matrices
>>>> [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html
>>>> for trouble shooting.
>>>> [0]PETSC ERROR: Petsc Development GIT revision: v3.9-13-g05d412b GIT
>>>> Date: 2018-04-09 08:39:52 -0500
>>>> [0]PETSC ERROR: ./gcmBEAM on a cuda-debug named node50 by valera Mon
>>>> Apr 9 16:50:21 2018
>>>> [0]PETSC ERROR: Configure options PETSC_ARCH=cuda-debug
>>>> --download-mpich --with-blaslapack-dir=/usr/lib64 COPTFLAGS=-O2
>>>> CXXOPTFLAGS=-O2 FOPTFLAGS=-O2 --with-shared-libraries=1 --download-hypre
>>>> --with-debugging=1 --with-cuda=1 --CUDAFLAGS=-arch=sm_60 --download-hypre
>>>> --download-viennacl --download-cusp --download-cusp-commit=116b090
>>>> [0]PETSC ERROR: #30 PCSetUp_SAVIENNACL() line 47 in
>>>> /home/valera/petsc/src/ksp/pc/impls/saviennaclcuda/saviennacl.cu
>>>> [0]PETSC ERROR: #31 PCSetUp() line 923 in /home/valera/petsc/src/ksp/pc/
>>>> interface/precon.c
>>>> [0]PETSC ERROR: #32 KSPSetUp() line 381 in
>>>> /home/valera/petsc/src/ksp/ksp/interface/itfunc.c
>>>> [0]PETSC ERROR: #33 KSPSolve() line 612 in
>>>> /home/valera/petsc/src/ksp/ksp/interface/itfunc.c
>>>> PETSC_Solve_Sol: 1.2255668640136719E-002
>>>> PETSC_Solve_SSG: 1.2504816055297852E-002
>>>> -.-.-.-.-
>>>> [0]PETSC ERROR: --------------------- Error Message
>>>> --------------------------------------------------------------
>>>> [0]PETSC ERROR: No support for this operation for this object type
>>>> [0]PETSC ERROR: Currently only handles ViennaCL matrices
>>>> [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html
>>>> for trouble shooting.
>>>> [0]PETSC ERROR: Petsc Development GIT revision: v3.9-13-g05d412b GIT
>>>> Date: 2018-04-09 08:39:52 -0500
>>>> [0]PETSC ERROR: ./gcmBEAM on a cuda-debug named node50 by valera Mon
>>>> Apr 9 16:50:21 2018
>>>> [0]PETSC ERROR: Configure options PETSC_ARCH=cuda-debug
>>>> --download-mpich --with-blaslapack-dir=/usr/lib64 COPTFLAGS=-O2
>>>> CXXOPTFLAGS=-O2 FOPTFLAGS=-O2 --with-shared-libraries=1 --download-hypre
>>>> --with-debugging=1 --with-cuda=1 --CUDAFLAGS=-arch=sm_60 --download-hypre
>>>> --download-viennacl --download-cusp --download-cusp-commit=116b090
>>>> [0]PETSC ERROR: #34 PCSetUp_SAVIENNACL() line 47 in
>>>> /home/valera/petsc/src/ksp/pc/impls/saviennaclcuda/saviennacl.cu
>>>> [0]PETSC ERROR: #35 PCSetUp() line 923 in /home/valera/petsc/src/ksp/pc/
>>>> interface/precon.c
>>>> [0]PETSC ERROR: #36 KSPSetUp() line 381 in
>>>> /home/valera/petsc/src/ksp/ksp/interface/itfunc.c
>>>> [0]PETSC ERROR: #37 KSPSolve() line 612 in
>>>> /home/valera/petsc/src/ksp/ksp/interface/itfunc.c
>>>> PETSC_Solve_Sol: 1.3138055801391602E-002
>>>> PETSC_Solve_SSG: 1.3362646102905273E-002
>>>> -.-.-.-.-
>>>> [0]PETSC ERROR: --------------------- Error Message
>>>> --------------------------------------------------------------
>>>> [0]PETSC ERROR: No support for this operation for this object type
>>>> [0]PETSC ERROR: Currently only handles ViennaCL matrices
>>>> [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html
>>>> for trouble shooting.
>>>> [0]PETSC ERROR: Petsc Development GIT revision: v3.9-13-g05d412b GIT
>>>> Date: 2018-04-09 08:39:52 -0500
>>>> [0]PETSC ERROR: ./gcmBEAM on a cuda-debug named node50 by valera Mon
>>>> Apr 9 16:50:21 2018
>>>> [0]PETSC ERROR: Configure options PETSC_ARCH=cuda-debug
>>>> --download-mpich --with-blaslapack-dir=/usr/lib64 COPTFLAGS=-O2
>>>> CXXOPTFLAGS=-O2 FOPTFLAGS=-O2 --with-shared-libraries=1 --download-hypre
>>>> --with-debugging=1 --with-cuda=1 --CUDAFLAGS=-arch=sm_60 --download-hypre
>>>> --download-viennacl --download-cusp --download-cusp-commit=116b090
>>>> [0]PETSC ERROR: #38 PCSetUp_SAVIENNACL() line 47 in
>>>> /home/valera/petsc/src/ksp/pc/impls/saviennaclcuda/saviennacl.cu
>>>> [0]PETSC ERROR: #39 PCSetUp() line 923 in /home/valera/petsc/src/ksp/pc/
>>>> interface/precon.c
>>>> [0]PETSC ERROR: #40 KSPSetUp() line 381 in
>>>> /home/valera/petsc/src/ksp/ksp/interface/itfunc.c
>>>> [0]PETSC ERROR: #41 KSPSolve() line 612 in
>>>> /home/valera/petsc/src/ksp/ksp/interface/itfunc.c
>>>> PETSC_Solve_Sol: 1.2072801589965820E-002
>>>> PETSC_Solve_SSG: 1.2319087982177734E-002
>>>> -.-.-.-.-
>>>> [0]PETSC ERROR: --------------------- Error Message
>>>> --------------------------------------------------------------
>>>> [0]PETSC ERROR: No support for this operation for this object type
>>>> [0]PETSC ERROR: Currently only handles ViennaCL matrices
>>>> [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html
>>>> for trouble shooting.
>>>> [0]PETSC ERROR: Petsc Development GIT revision: v3.9-13-g05d412b GIT
>>>> Date: 2018-04-09 08:39:52 -0500
>>>> [0]PETSC ERROR: ./gcmBEAM on a cuda-debug named node50 by valera Mon
>>>> Apr 9 16:50:21 2018
>>>> [0]PETSC ERROR: Configure options PETSC_ARCH=cuda-debug
>>>> --download-mpich --with-blaslapack-dir=/usr/lib64 COPTFLAGS=-O2
>>>> CXXOPTFLAGS=-O2 FOPTFLAGS=-O2 --with-shared-libraries=1 --download-hypre
>>>> --with-debugging=1 --with-cuda=1 --CUDAFLAGS=-arch=sm_60 --download-hypre
>>>> --download-viennacl --download-cusp --download-cusp-commit=116b090
>>>> [0]PETSC ERROR: #42 PCSetUp_SAVIENNACL() line 47 in
>>>> /home/valera/petsc/src/ksp/pc/impls/saviennaclcuda/saviennacl.cu
>>>> [0]PETSC ERROR: #43 PCSetUp() line 923 in /home/valera/petsc/src/ksp/pc/
>>>> interface/precon.c
>>>> [0]PETSC ERROR: #44 KSPSetUp() line 381 in
>>>> /home/valera/petsc/src/ksp/ksp/interface/itfunc.c
>>>> [0]PETSC ERROR: #45 KSPSolve() line 612 in
>>>> /home/valera/petsc/src/ksp/ksp/interface/itfunc.c
>>>> PETSC_Solve_Sol: 1.2498617172241211E-002
>>>> PETSC_Solve_SSG: 1.2726306915283203E-002
>>>> -.-.-.-.-
>>>> -.-.-.-.-.-
>>>> TMain_Loop: 1.1020996570587158
>>>> -.-.-.-.-.-
>>>> WARNING! There are options you set that were not used!
>>>> WARNING! could be spelling mistake, etc!
>>>>
>>>>
>>>> On Mon, Apr 9, 2018 at 4:45 PM, Matthew Knepley <knepley at gmail.com>
>>>> wrote:
>>>>
>>>>> On Mon, Apr 9, 2018 at 7:27 PM, Manuel Valera <mvalera-w at sdsu.edu>
>>>>> wrote:
>>>>>
>>>>>> On Mon, Apr 9, 2018 at 4:09 PM, Matthew Knepley <knepley at gmail.com>
>>>>>> wrote:
>>>>>>
>>>>>>> On Mon, Apr 9, 2018 at 6:12 PM, Manuel Valera <mvalera-w at sdsu.edu>
>>>>>>> wrote:
>>>>>>>
>>>>>>>> Hello guys,
>>>>>>>>
>>>>>>>> I've made advances in my CUDA acceleration project, as you remember
>>>>>>>> i have a CFD model in need of better execution times.
>>>>>>>>
>>>>>>>> So far i have been able to solve the pressure system in the GPU and
>>>>>>>> the rest in serial, using PETSc only for this pressure solve, the library i
>>>>>>>> got to work was ViennaCL. First question, do i still have to switch
>>>>>>>> installations to use either CUDA library? this was a suggestion before, so
>>>>>>>> in order to use CUSP instead of ViennaCL, for example, i currently have to
>>>>>>>> change installations, is this still the case?
>>>>>>>>
>>>>>>>
>>>>>>> I am not sure what that means exactly. However, you can build a
>>>>>>> PETSc with CUDA and ViennaCL support. The type of Vec/Mat is selected at
>>>>>>> runtime.
>>>>>>>
>>>>>>
>>>>>> Karl Rupp wrote in a previous email:
>>>>>>
>>>>>> * * Right now only one of {native CUDA, CUSP, ViennaCL} can be
>>>>>> activated at configure time. This will be fixed later this month.*
>>>>>>
>>>>>> I was asking if this was already solved in 3.9,
>>>>>>
>>>>>
>>>>> Karl knows better than I do. I thought that was fixed, but maybe not
>>>>> in this release.
>>>>>
>>>>>
>>>>>>
>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>> Now, i started working in a fully parallelized version of the
>>>>>>>> model, which uses the DMs and DMDAs to distribute the arrays, if i try the
>>>>>>>> same flags as before i get an error saying "Currently only handles ViennaCL
>>>>>>>> matrices" when trying to solve for pressure, i get this is a feature still
>>>>>>>> not implemented? what options do i have to solve pressure, or assign a DMDA
>>>>>>>> array update to be done specifically in a GPU device?
>>>>>>>>
>>>>>>>
>>>>>>> If we can't see the error, we are just guessing. Please send the
>>>>>>> entire error message.
>>>>>>>
>>>>>>
>>>>>> Got it, I will paste the error at the end of this email
>>>>>>
>>>>>
>>>>> It is asking for a ViennaCL matrix. You must tell the DM to create one:
>>>>>
>>>>> -dm_mat_type aijviennacl
>>>>>
>>>>>
>>>>>>
>>>>>>
>>>>>>>
>>>>>>> Note, we only do linear algebra on the GPU, so none of the
>>>>>>> FormFunction/FormJacobian stuff for DMDA would be on the GPU.
>>>>>>>
>>>>>>
>>>>>> Yes, we only use it for linear algebra, e.g. solving a linear system
>>>>>> and updating an array with a problematic algorithm.
>>>>>>
>>>>>>
>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>> I was thinking of using the VecScatterCreateToZero for a regular
>>>>>>>> vector,
>>>>>>>>
>>>>>>>
>>>>>>> Why do you want a serial vector?
>>>>>>>
>>>>>>
>>>>>> Because it looks live ViennaCL doesn't handle arrays created with
>>>>>> DMDAVec, it was just an idea
>>>>>>
>>>>>
>>>>> No, it just needs the right type.
>>>>>
>>>>>
>>>>>>
>>>>>>
>>>>>>> but then i would have to create a vector and copy the DMDAVec into
>>>>>>>> it,
>>>>>>>>
>>>>>>>
>>>>>>> I do not understand what it means to copy the DM into the Vec.
>>>>>>>
>>>>>>
>>>>>> I meant copying a DMDAVec into a Vec object, the first is created
>>>>>> with a DMDA object for it's mapping across processors,
>>>>>>
>>>>>
>>>>> There is no such thing as a DMDAVec. Everything is just a Vec.
>>>>>
>>>>> Thanks,
>>>>>
>>>>> Matt
>>>>>
>>>>>
>>>>>>
>>>>>>> Thanks,
>>>>>>>
>>>>>>> Matt
>>>>>>>
>>>>>>>
>>>>>>>> is this accomplished with DMDAVecGetArrayReadF90 and then just
>>>>>>>> copy? do you think this will generate too much overhead?
>>>>>>>>
>>>>>>>> Thanks so much for your input,
>>>>>>>>
>>>>>>>> Manuel
>>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> --
>>>>>>> What most experimenters take for granted before they begin their
>>>>>>> experiments is infinitely more interesting than any results to which their
>>>>>>> experiments lead.
>>>>>>> -- Norbert Wiener
>>>>>>>
>>>>>>> https://www.cse.buffalo.edu/~knepley/
>>>>>>> <http://www.caam.rice.edu/~mk51/>
>>>>>>>
>>>>>>
>>>>>> The error happens when trying to use KSPSolve() for a vector made
>>>>>> with DMDAVec routines, the matrix is created without any DMDA routines
>>>>>>
>>>>>> Error:
>>>>>>
>>>>>> [0]PETSC ERROR: --------------------- Error Message
>>>>>> --------------------------------------------------------------
>>>>>> [0]PETSC ERROR: No support for this operation for this object type
>>>>>> [0]PETSC ERROR: Currently only handles ViennaCL matrices
>>>>>> [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/d
>>>>>> ocumentation/faq.html for trouble shooting.
>>>>>> [0]PETSC ERROR: Petsc Development GIT revision: v3.8.4-2418-gd9c423b
>>>>>> GIT Date: 2018-04-02 11:59:41 +0200
>>>>>> [0]PETSC ERROR: ./gcmBEAM on a cuda named node50 by valera Mon Apr 9
>>>>>> 16:24:26 2018
>>>>>> [0]PETSC ERROR: Configure options PETSC_ARCH=cuda --download-mpich
>>>>>> --download-fblaslapack COPTFLAGS=-O2 CXXOPTFLAGS=-O2 FOPTFLAGS=-O2
>>>>>> --with-shared-libraries=1 --download-hypre --with-debugging=no
>>>>>> --with-cuda=1 --CUDAFLAGS=-arch=sm_60 --download-hypre --download-viennacl
>>>>>> --download-cusp
>>>>>> [0]PETSC ERROR: #1 PCSetUp_SAVIENNACL() line 47 in
>>>>>> /home/valera/petsc/src/ksp/pc/impls/saviennaclcuda/saviennacl.cu
>>>>>> [0]PETSC ERROR: #2 PCSetUp() line 924 in
>>>>>> /home/valera/petsc/src/ksp/pc/interface/precon.c
>>>>>> [0]PETSC ERROR: #3 KSPSetUp() line 381 in
>>>>>> /home/valera/petsc/src/ksp/ksp/interface/itfunc.c
>>>>>> [0]PETSC ERROR: --------------------- Error Message
>>>>>> --------------------------------------------------------------
>>>>>> [0]PETSC ERROR: No support for this operation for this object type
>>>>>> [0]PETSC ERROR: Currently only handles ViennaCL matrices
>>>>>> [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/d
>>>>>> ocumentation/faq.html for trouble shooting.
>>>>>> [0]PETSC ERROR: Petsc Development GIT revision: v3.8.4-2418-gd9c423b
>>>>>> GIT Date: 2018-04-02 11:59:41 +0200
>>>>>> [0]PETSC ERROR: ./gcmBEAM on a cuda named node50 by valera Mon Apr 9
>>>>>> 16:24:26 2018
>>>>>> [0]PETSC ERROR: Configure options PETSC_ARCH=cuda --download-mpich
>>>>>> --download-fblaslapack COPTFLAGS=-O2 CXXOPTFLAGS=-O2 FOPTFLAGS=-O2
>>>>>> --with-shared-libraries=1 --download-hypre --with-debugging=no
>>>>>> --with-cuda=1 --CUDAFLAGS=-arch=sm_60 --download-hypre --download-viennacl
>>>>>> --download-cusp
>>>>>> [0]PETSC ERROR: #4 PCSetUp_SAVIENNACL() line 47 in
>>>>>> /home/valera/petsc/src/ksp/pc/impls/saviennaclcuda/saviennacl.cu
>>>>>> [0]PETSC ERROR: #5 PCSetUp() line 924 in
>>>>>> /home/valera/petsc/src/ksp/pc/interface/precon.c
>>>>>> Finished setting up matrix objects
>>>>>> Exiting PrepareNetCDF
>>>>>> [0]PETSC ERROR: ------------------------------
>>>>>> ------------------------------------------
>>>>>> [0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,
>>>>>> probably memory access out of range
>>>>>> [0]PETSC ERROR: Try option -start_in_debugger or
>>>>>> -on_error_attach_debugger
>>>>>> [0]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/d
>>>>>> ocumentation/faq.html#valgrind
>>>>>> [0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple
>>>>>> Mac OS X to find memory corruption errors
>>>>>> [0]PETSC ERROR: configure using --with-debugging=yes, recompile,
>>>>>> link, and run
>>>>>> [0]PETSC ERROR: to get more information on the crash.
>>>>>> [0]PETSC ERROR: --------------------- Error Message
>>>>>> --------------------------------------------------------------
>>>>>> [0]PETSC ERROR: Signal received
>>>>>> [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/d
>>>>>> ocumentation/faq.html for trouble shooting.
>>>>>> [0]PETSC ERROR: Petsc Development GIT revision: v3.8.4-2418-gd9c423b
>>>>>> GIT Date: 2018-04-02 11:59:41 +0200
>>>>>> [0]PETSC ERROR: ./gcmBEAM on a cuda named node50 by valera Mon Apr 9
>>>>>> 16:24:26 2018
>>>>>> [0]PETSC ERROR: Configure options PETSC_ARCH=cuda --download-mpich
>>>>>> --download-fblaslapack COPTFLAGS=-O2 CXXOPTFLAGS=-O2 FOPTFLAGS=-O2
>>>>>> --with-shared-libraries=1 --download-hypre --with-debugging=no
>>>>>> --with-cuda=1 --CUDAFLAGS=-arch=sm_60 --download-hypre --download-viennacl
>>>>>> --download-cusp
>>>>>> [0]PETSC ERROR: #6 User provided function() line 0 in unknown file
>>>>>> application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0
>>>>>> [unset]: write_line error; fd=-1 buf=:cmd=abort exitcode=59
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>
>>>>>
>>>>> --
>>>>> What most experimenters take for granted before they begin their
>>>>> experiments is infinitely more interesting than any results to which their
>>>>> experiments lead.
>>>>> -- Norbert Wiener
>>>>>
>>>>> https://www.cse.buffalo.edu/~knepley/
>>>>> <http://www.caam.rice.edu/~mk51/>
>>>>>
>>>>
>>>>
>>>
>>>
>>> --
>>> What most experimenters take for granted before they begin their
>>> experiments is infinitely more interesting than any results to which their
>>> experiments lead.
>>> -- Norbert Wiener
>>>
>>> https://www.cse.buffalo.edu/~knepley/ <http://www.caam.rice.edu/~mk51/>
>>>
>>
>>
>
>
> --
> What most experimenters take for granted before they begin their
> experiments is infinitely more interesting than any results to which their
> experiments lead.
> -- Norbert Wiener
>
> https://www.cse.buffalo.edu/~knepley/ <http://www.caam.rice.edu/~mk51/>
>
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