[petsc-users] PETSc in PDSLin

Afrah Najib afrah.nacib at gmail.com
Fri Sep 1 09:11:43 CDT 2017 

I am compiling PDSLin examples. I installed PETSc with the examples with no
errors. When I use    -Wl,-rpath option , I got this error:

:~/pdslin_2.0.0/examples$ make all
/usr/share/mpich-install/bin/mpicc -I/usr/share/mpich-install/include
-I/home/afrah/pdslin_2.0.0/include  -I/home/afrah/SuperLU_DIST_5.1.2/SRC
 -I/usr/include  -I/usr/local/include
 -I/home/afrah/PETSc-library2/petsc-3.7.6/source/include
-I/home/afrah/PETSc-library2/petsc-3.7.6-complex/source/include
-I/home/afrah/scotch-6.0.4/include -c dtest.c -o dtest.o -g -O0 -fopenmp
-std=c99 -DWITH_PETSC
dtest.c: In function ‘main’:
dtest.c:53:20: warning: implicit declaration of function
‘pdslin_print_input’ [-Wimplicit-function-declaration]
    if ( !proc_id ) pdslin_print_input(&input);
                    ^
dtest.c:127:39: warning: implicit declaration of function
‘pdslin_print_stat’ [-Wimplicit-function-declaration]
    if( input.verbose == PDSLin_VALL ) pdslin_print_stat( &stat,
matrix.pdslin_comm );
                                       ^
/usr/share/mpich-install/bin/mpicc -fopenmp  dtest.o
 -L/usr/share/mpich-install/lib/libmpi.a
/home/afrah/pdslin_2.0.0/lib/libpdslin.a -lm -llapack -lblas
-Wl,-rpath,/home/afrah/SuperLU_DIST_5.1.2/lib
-L/home/afrah/SuperLU_DIST_5.1.2/lib -lsuperlu_dist
-Wl,-rpath,/usr/local/lib -L/usr/local/lib -lmetis
 -Wl,-rpath,/usr/share/parmetis/lib -L/usr/share/parmetis/lib -lparmetis
-Wl,-rpath,/home/afrah/PETSc-library2/petsc-3.7.6/source/lib
-L/home/afrah/PETSc-library2/petsc-3.7.6/source/lib -llibpetsc  -o dtest -g
-O0 -fopenmp -std=c99 -DWITH_PETSC
/usr/bin/ld: cannot find -llibpetsc
collect2: error: ld returned 1 exit status
makefile:10: recipe for target 'dtest' failed
make: *** [dtest] Error 1


On 1 September 2017 at 16:19, Matthew Knepley <knepley at gmail.com> wrote:

> On Fri, Sep 1, 2017 at 5:48 AM, Afrah Najib <afrah.nacib at gmail.com> wrote:
>
>> I want to use use PETSc in a hybrid solver(direct- iterative) called
>> PDSLin 2.0.0.[http://portal.nersc.gov/project/sparse/pdslin/]
>>
>> the version of PETSc used is petsc3.7.6. When running the examples, I got
>> the following errors:
>>
>>
>>
>> :~/pdslin_2.0.0/examples$ make all
>> /usr/share/mpich-install/bin/mpicc -I/usr/share/mpich-install/include
>> -I/home/afrah/pdslin_2.0.0/include  -I/home/afrah/SuperLU_DIST_5.1.2/SRC
>>    -I/usr/include  -I/usr/local/include  -I/home/afrah/PETSc-library2/petsc-3.7.6/source/include
>> -I/home/afrah/PETSc-library2/petsc-3.7.6-complex/source/include
>> -I/home/afrah/scotch-6.0.4/include -c dtest.c -o dtest.o -g -O0 -fopenmp
>> -std=c99 -DWITH_PETSC
>> dtest.c: In function ‘main’:
>> dtest.c:53:20: warning: implicit declaration of function
>> ‘pdslin_print_input’ [-Wimplicit-function-declaration]
>>     if ( !proc_id ) pdslin_print_input(&input);
>>                     ^
>> dtest.c:127:39: warning: implicit declaration of function
>> ‘pdslin_print_stat’ [-Wimplicit-function-declaration]
>>     if( input.verbose == PDSLin_VALL ) pdslin_print_stat( &sta
>>
>
> Note that below, you do not have -lpetsc. I would recommend using the
> PETSc makefiles, but you can also run 'make getlinklibs' to the correct
> link line.
>
>   Thanks,
>
>     Matt
>
>
>>                                   ^
>> /usr/share/mpich-install/bin/mpicc -fopenmp  dtest.o
>>  -L/usr/share/mpich-install/lib/libmpi.a /home/afrah/pdslin_2.0.0/lib/libpdslin.a
>> -lm -llapack -lblas -Wl,-rpath,/home/afrah/SuperLU_DIST_5.1.2/lib
>> -L/home/afrah/SuperLU_DIST_5.1.2/lib -lsuperlu_dist
>> -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lmetis
>>  -Wl,-rpath,/usr/share/parmetis/lib -L/usr/share/parmetis/lib -lparmetis
>> -L/home/afrah/PETSc-library2/petsc-3.7.6/source/lib/libpetsc.so  -o
>> dtest -g -O0 -fopenmp -std=c99 -DWITH_PETSC
>> /home/afrah/pdslin_2.0.0/lib/libpdslin.a(dpdslin_core.o): In function
>> `PetscMPITypeSizeComm':
>> /home/afrah/PETSc-library2/petsc-3.7.6/source/include/petsclog.h:328:
>> undefined reference to `PetscError'
>> /home/afrah/PETSc-library2/petsc-3.7.6/source/include/petsclog.h:329:
>> undefined reference to `PetscError'
>> /home/afrah/pdslin_2.0.0/lib/libpdslin.a(dpdslin_core.o): In function
>> `dcomp_schur':
>> /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:92: undefined reference to
>> `petsc_gather_ct'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:92: undefined reference to
>> `petsc_gather_ct'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:121: undefined reference to
>> `petsc_gather_ct'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:121: undefined reference to
>> `petsc_gather_ct'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:129: undefined reference to
>> `petsc_gather_ct'
>> /home/afrah/pdslin_2.0.0/lib/libpdslin.a(dpdslin_core.o):/ho
>> me/afrah/pdslin_2.0.0/src/dpdslin_core.c:129: more undefined references
>> to `petsc_gather_ct' follow
>> /home/afrah/pdslin_2.0.0/lib/libpdslin.a(dpdslin_core.o): In function
>> `dcomp_sol':
>> /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:486: undefined reference to
>> `petsc_allreduce_ct'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:486: undefined reference to
>> `petsc_allreduce_ct'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:495: undefined reference to
>> `petsc_allreduce_ct'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:495: undefined reference to
>> `petsc_allreduce_ct'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:496: undefined reference to
>> `petsc_allreduce_ct'
>> /home/afrah/pdslin_2.0.0/lib/libpdslin.a(dpdslin_core.o):/ho
>> me/afrah/pdslin_2.0.0/src/dpdslin_core.c:496: more undefined references
>> to `petsc_allreduce_ct' follow
>> /home/afrah/pdslin_2.0.0/lib/libpdslin.a(dpdslin_core.o): In function
>> `dcomp_sol':
>> /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:614: undefined reference to
>> `petsc_gather_ct'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:614: undefined reference to
>> `petsc_gather_ct'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:625: undefined reference to
>> `petsc_allreduce_ct'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:625: undefined reference to
>> `petsc_allreduce_ct'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:625: undefined reference to
>> `petsc_send_len'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:659: undefined reference to
>> `petsc_allreduce_ct'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:659: undefined reference to
>> `petsc_allreduce_ct'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:793: undefined reference to
>> `petsc_allreduce_ct'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:793: undefined reference to
>> `petsc_allreduce_ct'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:793: undefined reference to
>> `petsc_send_len'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:795: undefined reference to
>> `petsc_allreduce_ct'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:795: undefined reference to
>> `petsc_allreduce_ct'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:795: undefined reference to
>> `petsc_send_len'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:803: undefined reference to
>> `petsc_gather_ct'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:803: undefined reference to
>> `petsc_gather_ct'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:812: undefined reference to
>> `petsc_allreduce_ct'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:812: undefined reference to
>> `petsc_allreduce_ct'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:862: undefined reference to
>> `petsc_allreduce_ct'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:862: undefined reference to
>> `petsc_allreduce_ct'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:891: undefined reference to
>> `petsc_allreduce_ct'
>> /home/afrah/pdslin_2.0.0/lib/libpdslin.a(dpdslin_core.o):/ho
>> me/afrah/pdslin_2.0.0/src/dpdslin_core.c:891: more undefined references
>> to `petsc_allreduce_ct' follow
>> /home/afrah/pdslin_2.0.0/lib/libpdslin.a(dpdslin_core.o): In function
>> `dallgather_ssol':
>> /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:1094: undefined reference to
>> `petsc_gather_ct'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:1094: undefined reference to
>> `petsc_gather_ct'
>> /home/afrah/pdslin_2.0.0/lib/libpdslin.a(dpdslin_core.o): In function
>> `dsparsify_schur':
>> /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:1331: undefined reference to
>> `petsc_gather_ct'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:1331: undefined reference to
>> `petsc_gather_ct'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:1357: undefined reference to
>> `petsc_gather_ct'
>> /home/afrah/pdslin_2.0.0/lib/libpdslin.a(dpdslin_core.o):/ho
>> me/afrah/pdslin_2.0.0/src/dpdslin_core.c:1357: more undefined references
>> to `petsc_gather_ct' follow
>> /home/afrah/pdslin_2.0.0/lib/libpdslin.a(dpdslin_core.o): In function
>> `dsparsify_schur':
>> /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:1789: undefined reference to
>> `petsc_allreduce_ct'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:1789: undefined reference to
>> `petsc_allreduce_ct'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:1861: undefined reference to
>> `petsc_gather_ct'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:1861: undefined reference to
>> `petsc_gather_ct'
>> /home/afrah/pdslin_2.0.0/lib/libpdslin.a(dpdslin_petsc.o): In function
>> `PetscMPITypeSizeComm':
>> /home/afrah/PETSc-library2/petsc-3.7.6/source/include/petsclog.h:328:
>> undefined reference to `PetscError'
>> /home/afrah/PETSc-library2/petsc-3.7.6/source/include/petsclog.h:329:
>> undefined reference to `PetscError'
>> /home/afrah/pdslin_2.0.0/lib/libpdslin.a(dpdslin_petsc.o): In function
>> `dpetsc_init':
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:60: undefined reference to
>> `PetscInitialized'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:62: undefined reference to
>> `PetscInitialize'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:63: undefined reference to
>> `PetscError'
>> /home/afrah/pdslin_2.0.0/lib/libpdslin.a(dpdslin_petsc.o): In function
>> `dpetsc_clean':
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:71: undefined reference to
>> `PetscFinalize'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:72: undefined reference to
>> `PetscError'
>> /home/afrah/pdslin_2.0.0/lib/libpdslin.a(dpdslin_petsc.o): In function
>> `dsolve_schur_petsc':
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:164: undefined reference to
>> `petsc_allreduce_ct'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:164: undefined reference to
>> `petsc_allreduce_ct'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:164: undefined reference to
>> `petsc_send_len'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:229: undefined reference to
>> `petsc_allreduce_ct'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:229: undefined reference to
>> `petsc_allreduce_ct'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:229: undefined reference to
>> `petsc_send_len'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:251: undefined reference to
>> `petsc_allreduce_ct'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:251: undefined reference to
>> `petsc_allreduce_ct'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:251: undefined reference to
>> `petsc_send_len'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:292: undefined reference to
>> `VecCreate'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:292: undefined reference to
>> `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:293: undefined reference to
>> `VecSetSizes'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:293: undefined reference to
>> `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:294: undefined reference to
>> `VecSetFromOptions'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:294: undefined reference to
>> `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:295: undefined reference to
>> `VecDuplicate'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:295: undefined reference to
>> `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:296: undefined reference to
>> `VecDuplicate'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:296: undefined reference to
>> `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:305: undefined reference to
>> `MatCreate'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:305: undefined reference to
>> `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:306: undefined reference to
>> `MatSetSizes'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:306: undefined reference to
>> `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:308: undefined reference to
>> `MatSetFromOptions'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:308: undefined reference to
>> `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:311: undefined reference to
>> `MatCreateShell'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:312: undefined reference to
>> `MatShellSetOperation'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:325: undefined reference to
>> `MatCreate'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:325: undefined reference to
>> `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:326: undefined reference to
>> `MatSetSizes'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:326: undefined reference to
>> `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:328: undefined reference to
>> `MatSetFromOptions'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:328: undefined reference to
>> `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:346: undefined reference to
>> `MatMPIAIJSetPreallocation'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:347: undefined reference to
>> `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:348: undefined reference to
>> `MatSeqAIJSetPreallocation'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:349: undefined reference to
>> `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:359: undefined reference to
>> `MatMPIAIJSetPreallocation'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:360: undefined reference to
>> `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:361: undefined reference to
>> `MatSeqAIJSetPreallocation'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:362: undefined reference to
>> `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:377: undefined reference to
>> `MatSetValues'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:378: undefined reference to
>> `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:383: undefined reference to
>> `MatAssemblyBegin'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:383: undefined reference to
>> `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:384: undefined reference to
>> `MatAssemblyEnd'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:384: undefined reference to
>> `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:386: undefined reference to
>> `MatAssemblyBegin'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:386: undefined reference to
>> `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:387: undefined reference to
>> `MatAssemblyEnd'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:387: undefined reference to
>> `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:396: undefined reference to
>> `VecSetValues'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:397: undefined reference to
>> `VecAssemblyBegin'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:397: undefined reference to
>> `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:398: undefined reference to
>> `VecAssemblyEnd'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:398: undefined reference to
>> `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:409: undefined reference to
>> `KSPCreate'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:410: undefined reference to
>> `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:421: undefined reference to
>> `KSPSetOperators'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:427: undefined reference to
>> `KSPSetOperators'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:430: undefined reference to
>> `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:439: undefined reference to
>> `KSPSetFromOptions'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:439: undefined reference to
>> `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:440: undefined reference to
>> `KSPSetTolerances'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:441: undefined reference to
>> `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:450: undefined reference to
>> `KSPSetType'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:450: undefined reference to
>> `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:451: undefined reference to
>> `KSPGMRESSetRestart'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:451: undefined reference to
>> `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:463: undefined reference to
>> `KSPSetType'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:463: undefined reference to
>> `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:468: undefined reference to
>> `KSPGMRESSetRestart'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:468: undefined reference to
>> `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:470: undefined reference to
>> `KSPGMRESModifiedGramSchmidtOrthogonalization'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:470: undefined reference to
>> `KSPGMRESSetOrthogonalization'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:471: undefined reference to
>> `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:473: undefined reference to
>> `KSPGMRESClassicalGramSchmidtOrthogonalization'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:473: undefined reference to
>> `KSPGMRESSetOrthogonalization'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:474: undefined reference to
>> `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:481: undefined reference to
>> `KSPSetType'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:481: undefined reference to
>> `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:483: undefined reference to
>> `KSPSetPCSide'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:483: undefined reference to
>> `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:488: undefined reference to
>> `KSPSetType'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:488: undefined reference to
>> `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:495: undefined reference to
>> `KSPGetPC'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:495: undefined reference to
>> `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:502: undefined reference to
>> `PCSetType'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:502: undefined reference to
>> `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:503: undefined reference to
>> `PCFactorSetLevels'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:503: undefined reference to
>> `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:510: undefined reference to
>> `PCSetType'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:510: undefined reference to
>> `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:520: undefined reference to
>> `PCFactorSetDropTolerance'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:522: undefined reference to
>> `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:527: undefined reference to
>> `PCSetType'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:527: undefined reference to
>> `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:528: undefined reference to
>> `PCASMSetOverlap'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:528: undefined reference to
>> `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:535: undefined reference to
>> `KSPSetUp'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:535: undefined reference to
>> `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:536: undefined reference to
>> `PCASMGetSubKSP'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:536: undefined reference to
>> `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:538: undefined reference to
>> `KSPGetPC'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:538: undefined reference to
>> `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:539: undefined reference to
>> `KSPSetType'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:539: undefined reference to
>> `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:540: undefined reference to
>> `PCSetType'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:540: undefined reference to
>> `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:544: undefined reference to
>> `PCSetType'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:572: undefined reference to
>> `PCShellSetApply'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:573: undefined reference to
>> `PCShellSetContext'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:589: undefined reference to
>> `KSPSetInitialGuessNonzero'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:590: undefined reference to
>> `VecSetValues'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:592: undefined reference to
>> `VecAssemblyBegin'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:592: undefined reference to
>> `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:593: undefined reference to
>> `VecAssemblyEnd'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:593: undefined reference to
>> `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:595: undefined reference to
>> `KSPSetInitialGuessNonzero'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:601: undefined reference to
>> `KSPSolve'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:602: undefined reference to
>> `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:613: undefined reference to
>> `KSPGetConvergedReason'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:617: undefined reference to
>> `KSPGetIterationNumber'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:628: undefined reference to
>> `KSPGetResidualNorm'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:635: undefined reference to
>> `PETSC_VIEWER_STDOUT_'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:635: undefined reference to
>> `KSPView'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:636: undefined reference to
>> `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:664: undefined reference to
>> `VecGetValues'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:677: undefined reference to
>> `VecDestroy'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:677: undefined reference to
>> `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:678: undefined reference to
>> `VecDestroy'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:678: undefined reference to
>> `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:679: undefined reference to
>> `VecDestroy'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:679: undefined reference to
>> `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:680: undefined reference to
>> `MatDestroy'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:680: undefined reference to
>> `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:681: undefined reference to
>> `KSPDestroy'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:681: undefined reference to
>> `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:707: undefined reference to
>> `petsc_allreduce_ct'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:707: undefined reference to
>> `petsc_allreduce_ct'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:708: undefined reference to
>> `petsc_allreduce_ct'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:708: undefined reference to
>> `petsc_allreduce_ct'
>> /home/afrah/pdslin_2.0.0/lib/libpdslin.a(dpdslin_petsc.o): In function
>> `dprecond_slu':
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:781: undefined reference to
>> `PCShellGetContext'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:847: undefined reference to
>> `VecGetValues'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:848: undefined reference to
>> `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:858: undefined reference to
>> `petsc_gather_ct'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:858: undefined reference to
>> `petsc_gather_ct'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:876: undefined reference to
>> `petsc_allreduce_ct'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:876: undefined reference to
>> `petsc_allreduce_ct'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:881: undefined reference to
>> `VecSetValues'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:883: undefined reference to
>> `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:884: undefined reference to
>> `VecAssemblyBegin'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:884: undefined reference to
>> `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:885: undefined reference to
>> `VecAssemblyEnd'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:885: undefined reference to
>> `PetscError'
>> /home/afrah/pdslin_2.0.0/lib/libpdslin.a(dpdslin_petsc.o): In function
>> `dmatop':
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1025: undefined reference
>> to `MatShellGetContext'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1064: undefined reference
>> to `VecGetValues'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1066: undefined reference
>> to `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1093: undefined reference
>> to `VecSetValues'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1095: undefined reference
>> to `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1096: undefined reference
>> to `VecAssemblyBegin'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1096: undefined reference
>> to `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1097: undefined reference
>> to `VecAssemblyEnd'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1097: undefined reference
>> to `PetscError'
>> /home/afrah/pdslin_2.0.0/lib/libpdslin.a(dpdslin_petsc.o): In function
>> `dmat_schur':
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1161: undefined reference
>> to `petsc_gather_ct'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1161: undefined reference
>> to `petsc_gather_ct'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1379: undefined reference
>> to `petsc_allreduce_ct'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1379: undefined reference
>> to `petsc_allreduce_ct'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1379: undefined reference
>> to `petsc_send_len'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1399: undefined reference
>> to `petsc_allreduce_ct'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1399: undefined reference
>> to `petsc_allreduce_ct'
>> /home/afrah/pdslin_2.0.0/lib/libpdslin.a(dpdslin_petsc.o): In function
>> `dpetsc_iluksolver':
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1486: undefined reference
>> to `PETSC_COMM_WORLD'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1486: undefined reference
>> to `VecCreate'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1486: undefined reference
>> to `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1487: undefined reference
>> to `VecSetSizes'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1487: undefined reference
>> to `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1488: undefined reference
>> to `VecSetFromOptions'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1488: undefined reference
>> to `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1489: undefined reference
>> to `VecDuplicate'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1489: undefined reference
>> to `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1490: undefined reference
>> to `VecDuplicate'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1490: undefined reference
>> to `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1498: undefined reference
>> to `PETSC_COMM_WORLD'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1498: undefined reference
>> to `MatCreate'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1498: undefined reference
>> to `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1499: undefined reference
>> to `MatSetSizes'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1499: undefined reference
>> to `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1501: undefined reference
>> to `MatSetFromOptions'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1501: undefined reference
>> to `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1515: undefined reference
>> to `MatSetValues'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1520: undefined reference
>> to `MatAssemblyBegin'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1520: undefined reference
>> to `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1521: undefined reference
>> to `MatAssemblyEnd'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1521: undefined reference
>> to `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1529: undefined reference
>> to `VecSetValues'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1530: undefined reference
>> to `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1531: undefined reference
>> to `VecAssemblyBegin'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1531: undefined reference
>> to `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1532: undefined reference
>> to `VecAssemblyEnd'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1532: undefined reference
>> to `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1538: undefined reference
>> to `PETSC_COMM_WORLD'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1538: undefined reference
>> to `KSPCreate'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1539: undefined reference
>> to `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1548: undefined reference
>> to `KSPSetOperators'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1550: undefined reference
>> to `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1557: undefined reference
>> to `KSPSetType'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1557: undefined reference
>> to `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1558: undefined reference
>> to `KSPSetTolerances'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1559: undefined reference
>> to `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1561: undefined reference
>> to `KSPSetResidualHistory'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1567: undefined reference
>> to `KSPGetPC'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1567: undefined reference
>> to `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1568: undefined reference
>> to `PCSetType'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1568: undefined reference
>> to `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1572: undefined reference
>> to `PCFactorSetLevels'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1572: undefined reference
>> to `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1574: undefined reference
>> to `KSPSetFromOptions'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1574: undefined reference
>> to `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1580: undefined reference
>> to `KSPSolve'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1581: undefined reference
>> to `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1586: undefined reference
>> to `KSPGetConvergedReason'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1593: undefined reference
>> to `KSPGetIterationNumber'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1594: undefined reference
>> to `KSPGetResidualNorm'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1610: undefined reference
>> to `VecAssemblyBegin'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1610: undefined reference
>> to `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1611: undefined reference
>> to `VecAssemblyEnd'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1611: undefined reference
>> to `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1615: undefined reference
>> to `VecGetValues'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1622: undefined reference
>> to `PETSC_COMM_WORLD'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1622: undefined reference
>> to `PETSC_VIEWER_STDOUT_'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1622: undefined reference
>> to `KSPView'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1623: undefined reference
>> to `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1628: undefined reference
>> to `VecDestroy'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1628: undefined reference
>> to `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1629: undefined reference
>> to `VecDestroy'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1629: undefined reference
>> to `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1630: undefined reference
>> to `VecDestroy'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1630: undefined reference
>> to `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1631: undefined reference
>> to `MatDestroy'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1631: undefined reference
>> to `PetscError'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1632: undefined reference
>> to `KSPDestroy'
>> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1632: undefined reference
>> to `PetscError'
>> /home/afrah/pdslin_2.0.0/lib/libpdslin.a(dpdslin_fgmres.o): In function
>> `PetscMPITypeSizeComm':
>> /home/afrah/PETSc-library2/petsc-3.7.6/source/include/petsclog.h:328:
>> undefined reference to `PetscError'
>> /home/afrah/PETSc-library2/petsc-3.7.6/source/include/petsclog.h:329:
>> undefined reference to `PetscError'
>>
>>
>
>
> --
> What most experimenters take for granted before they begin their
> experiments is infinitely more interesting than any results to which their
> experiments lead.
> -- Norbert Wiener
>
> http://www.caam.rice.edu/~mk51/
>
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