[petsc-users] PETSc in PDSLin

Fri Sep 1 08:19:14 CDT 2017

On Fri, Sep 1, 2017 at 5:48 AM, Afrah Najib <afrah.nacib at gmail.com> wrote:

> I want to use use PETSc in a hybrid solver(direct- iterative) called
> PDSLin 2.0.0.[http://portal.nersc.gov/project/sparse/pdslin/]
>
> the version of PETSc used is petsc3.7.6. When running the examples, I got
> the following errors:
>
>
>
> :~/pdslin_2.0.0/examples$ make all
> /usr/share/mpich-install/bin/mpicc -I/usr/share/mpich-install/include
> -I/home/afrah/pdslin_2.0.0/include  -I/home/afrah/SuperLU_DIST_5.1.2/SRC
>    -I/usr/include  -I/usr/local/include  -I/home/afrah/PETSc-library2/petsc-3.7.6/source/include
> -I/home/afrah/PETSc-library2/petsc-3.7.6-complex/source/include
> -I/home/afrah/scotch-6.0.4/include -c dtest.c -o dtest.o -g -O0 -fopenmp
> -std=c99 -DWITH_PETSC
> dtest.c: In function ‘main’:
> dtest.c:53:20: warning: implicit declaration of function
> ‘pdslin_print_input’ [-Wimplicit-function-declaration]
>     if ( !proc_id ) pdslin_print_input(&input);
>                     ^
> dtest.c:127:39: warning: implicit declaration of function
> ‘pdslin_print_stat’ [-Wimplicit-function-declaration]
>     if( input.verbose == PDSLin_VALL ) pdslin_print_stat( &sta
>

Note that below, you do not have -lpetsc. I would recommend using the PETSc
makefiles, but you can also run 'make getlinklibs' to the correct link line.

  Thanks,

    Matt

>                                   ^
> /usr/share/mpich-install/bin/mpicc -fopenmp  dtest.o
>  -L/usr/share/mpich-install/lib/libmpi.a /home/afrah/pdslin_2.0.0/lib/libpdslin.a
> -lm -llapack -lblas -Wl,-rpath,/home/afrah/SuperLU_DIST_5.1.2/lib
> -L/home/afrah/SuperLU_DIST_5.1.2/lib -lsuperlu_dist
> -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lmetis
>  -Wl,-rpath,/usr/share/parmetis/lib -L/usr/share/parmetis/lib -lparmetis
> -L/home/afrah/PETSc-library2/petsc-3.7.6/source/lib/libpetsc.so  -o dtest
> -g -O0 -fopenmp -std=c99 -DWITH_PETSC
> /home/afrah/pdslin_2.0.0/lib/libpdslin.a(dpdslin_core.o): In function
> `PetscMPITypeSizeComm':
> /home/afrah/PETSc-library2/petsc-3.7.6/source/include/petsclog.h:328:
> undefined reference to `PetscError'
> /home/afrah/PETSc-library2/petsc-3.7.6/source/include/petsclog.h:329:
> undefined reference to `PetscError'
> /home/afrah/pdslin_2.0.0/lib/libpdslin.a(dpdslin_core.o): In function
> `dcomp_schur':
> /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:92: undefined reference to
> `petsc_gather_ct'
> /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:92: undefined reference to
> `petsc_gather_ct'
> /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:121: undefined reference to
> `petsc_gather_ct'
> /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:121: undefined reference to
> `petsc_gather_ct'
> /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:129: undefined reference to
> `petsc_gather_ct'
> /home/afrah/pdslin_2.0.0/lib/libpdslin.a(dpdslin_core.o):/ho
> me/afrah/pdslin_2.0.0/src/dpdslin_core.c:129: more undefined references
> to `petsc_gather_ct' follow
> /home/afrah/pdslin_2.0.0/lib/libpdslin.a(dpdslin_core.o): In function
> `dcomp_sol':
> /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:486: undefined reference to
> `petsc_allreduce_ct'
> /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:486: undefined reference to
> `petsc_allreduce_ct'
> /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:495: undefined reference to
> `petsc_allreduce_ct'
> /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:495: undefined reference to
> `petsc_allreduce_ct'
> /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:496: undefined reference to
> `petsc_allreduce_ct'
> /home/afrah/pdslin_2.0.0/lib/libpdslin.a(dpdslin_core.o):/ho
> me/afrah/pdslin_2.0.0/src/dpdslin_core.c:496: more undefined references
> to `petsc_allreduce_ct' follow
> /home/afrah/pdslin_2.0.0/lib/libpdslin.a(dpdslin_core.o): In function
> `dcomp_sol':
> /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:614: undefined reference to
> `petsc_gather_ct'
> /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:614: undefined reference to
> `petsc_gather_ct'
> /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:625: undefined reference to
> `petsc_allreduce_ct'
> /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:625: undefined reference to
> `petsc_allreduce_ct'
> /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:625: undefined reference to
> `petsc_send_len'
> /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:659: undefined reference to
> `petsc_allreduce_ct'
> /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:659: undefined reference to
> `petsc_allreduce_ct'
> /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:793: undefined reference to
> `petsc_allreduce_ct'
> /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:793: undefined reference to
> `petsc_allreduce_ct'
> /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:793: undefined reference to
> `petsc_send_len'
> /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:795: undefined reference to
> `petsc_allreduce_ct'
> /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:795: undefined reference to
> `petsc_allreduce_ct'
> /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:795: undefined reference to
> `petsc_send_len'
> /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:803: undefined reference to
> `petsc_gather_ct'
> /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:803: undefined reference to
> `petsc_gather_ct'
> /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:812: undefined reference to
> `petsc_allreduce_ct'
> /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:812: undefined reference to
> `petsc_allreduce_ct'
> /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:862: undefined reference to
> `petsc_allreduce_ct'
> /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:862: undefined reference to
> `petsc_allreduce_ct'
> /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:891: undefined reference to
> `petsc_allreduce_ct'
> /home/afrah/pdslin_2.0.0/lib/libpdslin.a(dpdslin_core.o):/ho
> me/afrah/pdslin_2.0.0/src/dpdslin_core.c:891: more undefined references
> to `petsc_allreduce_ct' follow
> /home/afrah/pdslin_2.0.0/lib/libpdslin.a(dpdslin_core.o): In function
> `dallgather_ssol':
> /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:1094: undefined reference to
> `petsc_gather_ct'
> /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:1094: undefined reference to
> `petsc_gather_ct'
> /home/afrah/pdslin_2.0.0/lib/libpdslin.a(dpdslin_core.o): In function
> `dsparsify_schur':
> /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:1331: undefined reference to
> `petsc_gather_ct'
> /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:1331: undefined reference to
> `petsc_gather_ct'
> /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:1357: undefined reference to
> `petsc_gather_ct'
> /home/afrah/pdslin_2.0.0/lib/libpdslin.a(dpdslin_core.o):/ho
> me/afrah/pdslin_2.0.0/src/dpdslin_core.c:1357: more undefined references
> to `petsc_gather_ct' follow
> /home/afrah/pdslin_2.0.0/lib/libpdslin.a(dpdslin_core.o): In function
> `dsparsify_schur':
> /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:1789: undefined reference to
> `petsc_allreduce_ct'
> /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:1789: undefined reference to
> `petsc_allreduce_ct'
> /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:1861: undefined reference to
> `petsc_gather_ct'
> /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:1861: undefined reference to
> `petsc_gather_ct'
> /home/afrah/pdslin_2.0.0/lib/libpdslin.a(dpdslin_petsc.o): In function
> `PetscMPITypeSizeComm':
> /home/afrah/PETSc-library2/petsc-3.7.6/source/include/petsclog.h:328:
> undefined reference to `PetscError'
> /home/afrah/PETSc-library2/petsc-3.7.6/source/include/petsclog.h:329:
> undefined reference to `PetscError'
> /home/afrah/pdslin_2.0.0/lib/libpdslin.a(dpdslin_petsc.o): In function
> `dpetsc_init':
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:60: undefined reference to
> `PetscInitialized'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:62: undefined reference to
> `PetscInitialize'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:63: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/lib/libpdslin.a(dpdslin_petsc.o): In function
> `dpetsc_clean':
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:71: undefined reference to
> `PetscFinalize'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:72: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/lib/libpdslin.a(dpdslin_petsc.o): In function
> `dsolve_schur_petsc':
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:164: undefined reference to
> `petsc_allreduce_ct'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:164: undefined reference to
> `petsc_allreduce_ct'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:164: undefined reference to
> `petsc_send_len'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:229: undefined reference to
> `petsc_allreduce_ct'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:229: undefined reference to
> `petsc_allreduce_ct'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:229: undefined reference to
> `petsc_send_len'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:251: undefined reference to
> `petsc_allreduce_ct'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:251: undefined reference to
> `petsc_allreduce_ct'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:251: undefined reference to
> `petsc_send_len'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:292: undefined reference to
> `VecCreate'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:292: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:293: undefined reference to
> `VecSetSizes'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:293: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:294: undefined reference to
> `VecSetFromOptions'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:294: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:295: undefined reference to
> `VecDuplicate'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:295: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:296: undefined reference to
> `VecDuplicate'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:296: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:305: undefined reference to
> `MatCreate'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:305: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:306: undefined reference to
> `MatSetSizes'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:306: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:308: undefined reference to
> `MatSetFromOptions'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:308: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:311: undefined reference to
> `MatCreateShell'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:312: undefined reference to
> `MatShellSetOperation'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:325: undefined reference to
> `MatCreate'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:325: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:326: undefined reference to
> `MatSetSizes'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:326: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:328: undefined reference to
> `MatSetFromOptions'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:328: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:346: undefined reference to
> `MatMPIAIJSetPreallocation'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:347: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:348: undefined reference to
> `MatSeqAIJSetPreallocation'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:349: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:359: undefined reference to
> `MatMPIAIJSetPreallocation'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:360: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:361: undefined reference to
> `MatSeqAIJSetPreallocation'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:362: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:377: undefined reference to
> `MatSetValues'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:378: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:383: undefined reference to
> `MatAssemblyBegin'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:383: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:384: undefined reference to
> `MatAssemblyEnd'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:384: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:386: undefined reference to
> `MatAssemblyBegin'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:386: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:387: undefined reference to
> `MatAssemblyEnd'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:387: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:396: undefined reference to
> `VecSetValues'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:397: undefined reference to
> `VecAssemblyBegin'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:397: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:398: undefined reference to
> `VecAssemblyEnd'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:398: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:409: undefined reference to
> `KSPCreate'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:410: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:421: undefined reference to
> `KSPSetOperators'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:427: undefined reference to
> `KSPSetOperators'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:430: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:439: undefined reference to
> `KSPSetFromOptions'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:439: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:440: undefined reference to
> `KSPSetTolerances'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:441: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:450: undefined reference to
> `KSPSetType'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:450: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:451: undefined reference to
> `KSPGMRESSetRestart'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:451: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:463: undefined reference to
> `KSPSetType'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:463: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:468: undefined reference to
> `KSPGMRESSetRestart'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:468: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:470: undefined reference to
> `KSPGMRESModifiedGramSchmidtOrthogonalization'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:470: undefined reference to
> `KSPGMRESSetOrthogonalization'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:471: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:473: undefined reference to
> `KSPGMRESClassicalGramSchmidtOrthogonalization'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:473: undefined reference to
> `KSPGMRESSetOrthogonalization'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:474: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:481: undefined reference to
> `KSPSetType'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:481: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:483: undefined reference to
> `KSPSetPCSide'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:483: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:488: undefined reference to
> `KSPSetType'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:488: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:495: undefined reference to
> `KSPGetPC'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:495: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:502: undefined reference to
> `PCSetType'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:502: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:503: undefined reference to
> `PCFactorSetLevels'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:503: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:510: undefined reference to
> `PCSetType'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:510: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:520: undefined reference to
> `PCFactorSetDropTolerance'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:522: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:527: undefined reference to
> `PCSetType'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:527: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:528: undefined reference to
> `PCASMSetOverlap'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:528: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:535: undefined reference to
> `KSPSetUp'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:535: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:536: undefined reference to
> `PCASMGetSubKSP'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:536: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:538: undefined reference to
> `KSPGetPC'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:538: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:539: undefined reference to
> `KSPSetType'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:539: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:540: undefined reference to
> `PCSetType'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:540: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:544: undefined reference to
> `PCSetType'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:572: undefined reference to
> `PCShellSetApply'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:573: undefined reference to
> `PCShellSetContext'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:589: undefined reference to
> `KSPSetInitialGuessNonzero'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:590: undefined reference to
> `VecSetValues'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:592: undefined reference to
> `VecAssemblyBegin'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:592: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:593: undefined reference to
> `VecAssemblyEnd'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:593: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:595: undefined reference to
> `KSPSetInitialGuessNonzero'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:601: undefined reference to
> `KSPSolve'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:602: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:613: undefined reference to
> `KSPGetConvergedReason'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:617: undefined reference to
> `KSPGetIterationNumber'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:628: undefined reference to
> `KSPGetResidualNorm'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:635: undefined reference to
> `PETSC_VIEWER_STDOUT_'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:635: undefined reference to
> `KSPView'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:636: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:664: undefined reference to
> `VecGetValues'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:677: undefined reference to
> `VecDestroy'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:677: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:678: undefined reference to
> `VecDestroy'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:678: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:679: undefined reference to
> `VecDestroy'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:679: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:680: undefined reference to
> `MatDestroy'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:680: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:681: undefined reference to
> `KSPDestroy'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:681: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:707: undefined reference to
> `petsc_allreduce_ct'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:707: undefined reference to
> `petsc_allreduce_ct'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:708: undefined reference to
> `petsc_allreduce_ct'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:708: undefined reference to
> `petsc_allreduce_ct'
> /home/afrah/pdslin_2.0.0/lib/libpdslin.a(dpdslin_petsc.o): In function
> `dprecond_slu':
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:781: undefined reference to
> `PCShellGetContext'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:847: undefined reference to
> `VecGetValues'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:848: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:858: undefined reference to
> `petsc_gather_ct'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:858: undefined reference to
> `petsc_gather_ct'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:876: undefined reference to
> `petsc_allreduce_ct'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:876: undefined reference to
> `petsc_allreduce_ct'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:881: undefined reference to
> `VecSetValues'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:883: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:884: undefined reference to
> `VecAssemblyBegin'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:884: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:885: undefined reference to
> `VecAssemblyEnd'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:885: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/lib/libpdslin.a(dpdslin_petsc.o): In function
> `dmatop':
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1025: undefined reference to
> `MatShellGetContext'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1064: undefined reference to
> `VecGetValues'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1066: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1093: undefined reference to
> `VecSetValues'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1095: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1096: undefined reference to
> `VecAssemblyBegin'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1096: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1097: undefined reference to
> `VecAssemblyEnd'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1097: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/lib/libpdslin.a(dpdslin_petsc.o): In function
> `dmat_schur':
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1161: undefined reference to
> `petsc_gather_ct'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1161: undefined reference to
> `petsc_gather_ct'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1379: undefined reference to
> `petsc_allreduce_ct'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1379: undefined reference to
> `petsc_allreduce_ct'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1379: undefined reference to
> `petsc_send_len'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1399: undefined reference to
> `petsc_allreduce_ct'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1399: undefined reference to
> `petsc_allreduce_ct'
> /home/afrah/pdslin_2.0.0/lib/libpdslin.a(dpdslin_petsc.o): In function
> `dpetsc_iluksolver':
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1486: undefined reference to
> `PETSC_COMM_WORLD'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1486: undefined reference to
> `VecCreate'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1486: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1487: undefined reference to
> `VecSetSizes'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1487: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1488: undefined reference to
> `VecSetFromOptions'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1488: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1489: undefined reference to
> `VecDuplicate'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1489: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1490: undefined reference to
> `VecDuplicate'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1490: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1498: undefined reference to
> `PETSC_COMM_WORLD'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1498: undefined reference to
> `MatCreate'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1498: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1499: undefined reference to
> `MatSetSizes'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1499: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1501: undefined reference to
> `MatSetFromOptions'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1501: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1515: undefined reference to
> `MatSetValues'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1520: undefined reference to
> `MatAssemblyBegin'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1520: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1521: undefined reference to
> `MatAssemblyEnd'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1521: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1529: undefined reference to
> `VecSetValues'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1530: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1531: undefined reference to
> `VecAssemblyBegin'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1531: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1532: undefined reference to
> `VecAssemblyEnd'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1532: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1538: undefined reference to
> `PETSC_COMM_WORLD'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1538: undefined reference to
> `KSPCreate'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1539: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1548: undefined reference to
> `KSPSetOperators'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1550: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1557: undefined reference to
> `KSPSetType'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1557: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1558: undefined reference to
> `KSPSetTolerances'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1559: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1561: undefined reference to
> `KSPSetResidualHistory'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1567: undefined reference to
> `KSPGetPC'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1567: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1568: undefined reference to
> `PCSetType'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1568: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1572: undefined reference to
> `PCFactorSetLevels'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1572: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1574: undefined reference to
> `KSPSetFromOptions'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1574: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1580: undefined reference to
> `KSPSolve'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1581: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1586: undefined reference to
> `KSPGetConvergedReason'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1593: undefined reference to
> `KSPGetIterationNumber'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1594: undefined reference to
> `KSPGetResidualNorm'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1610: undefined reference to
> `VecAssemblyBegin'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1610: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1611: undefined reference to
> `VecAssemblyEnd'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1611: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1615: undefined reference to
> `VecGetValues'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1622: undefined reference to
> `PETSC_COMM_WORLD'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1622: undefined reference to
> `PETSC_VIEWER_STDOUT_'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1622: undefined reference to
> `KSPView'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1623: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1628: undefined reference to
> `VecDestroy'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1628: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1629: undefined reference to
> `VecDestroy'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1629: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1630: undefined reference to
> `VecDestroy'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1630: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1631: undefined reference to
> `MatDestroy'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1631: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1632: undefined reference to
> `KSPDestroy'
> /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1632: undefined reference to
> `PetscError'
> /home/afrah/pdslin_2.0.0/lib/libpdslin.a(dpdslin_fgmres.o): In function
> `PetscMPITypeSizeComm':
> /home/afrah/PETSc-library2/petsc-3.7.6/source/include/petsclog.h:328:
> undefined reference to `PetscError'
> /home/afrah/PETSc-library2/petsc-3.7.6/source/include/petsclog.h:329:
> undefined reference to `PetscError'
>
>

-- 
What most experimenters take for granted before they begin their
experiments is infinitely more interesting than any results to which their
experiments lead.
-- Norbert Wiener

http://www.caam.rice.edu/~mk51/
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