[petsc-users] PETSC profiling on 1536 cores
Justin Chang
jychang48 at gmail.com
Thu Jun 15 16:15:04 CDT 2017
Using no preconditioner is a bad bad idea and anyone with the gall to do
this deserves to be spanked.
For the Poisson equation, why not use PETSc's native algebraic multigrid
solver?
-pc_type gamg
On Thu, Jun 15, 2017 at 3:09 PM Pietro Incardona <asmprog32 at hotmail.com>
wrote:
> Dear All
>
>
> I tried PETSC version 3.6.5 to solve a linear system with 256 000 000
> unknown. The equation is Finite differences Poisson equation.
>
>
> I am using Conjugate gradient (the matrix is symmetric) with no
> preconditioner. Visualizing the solution is reasonable.
>
> Unfortunately the Conjugate-Gradient does not scale at all and I am
> extremely concerned about this problem in paticular about the profiling
> numbers.
>
> Looking at the profiler it seem that
>
>
> 1536 cores = 24 cores x 64
>
>
> VecScatterBegin 348 1.0 2.3975e-01 1.8 0.00e+00 0.0 7.7e+06 3.1e+04
> 0.0e+00 0 0 85 99 0 0 0 85 99 0 0
> VecScatterEnd 348 1.0 2.8680e+00 1.8 0.00e+00 0.0 0.0e+00 0.0e+00
> 0.0e+00 1 0 0 0 0 1 0 0 0 0 0
> MatMult 348 1.0 4.1088e+00 1.4 8.18e+08 1.3 7.7e+06 3.1e+04
> 0.0e+00 2 52 85 99 0 2 52 85 99 0 281866
>
>
> I was expecting that this part was the most expensive and take around 4
> second in total that sound reasonable
>
>
> Unfortunately
>
>
> on 1536 cores = 24 cores x 64
>
>
> VecTDot 696 1.0 3.4442e+01 1.4 2.52e+08 1.3 0.0e+00 0.0e+00
> 7.0e+02 12 16 0 0 65 12 16 0 0 65 10346
> VecNorm 349 1.0 1.1101e+02 1.1 1.26e+08 1.3 0.0e+00 0.0e+00
> 3.5e+02 46 8 0 0 33 46 8 0 0 33 1610
> VecAXPY 696 1.0 8.3134e+01 1.1 2.52e+08 1.3 0.0e+00 0.0e+00
> 0.0e+00 34 16 0 0 0 34 16 0 0 0 4286
>
>
> Take over 228 seconds. Considering that doing some test on the cluster I
> do not see any problem with MPI_Reduce I do not understand how these
> numbers are possible
>
>
>
> ////////////////////////// I also attach to the profiling part the
> inversion on 48 cores /////////////////////////
>
>
> VecTDot 696 1.0 1.4684e+01 1.3 3.92e+09 1.1 0.0e+00 0.0e+00
> 7.0e+02 6 16 0 0 65 6 16 0 0 65 24269
> VecNorm 349 1.0 4.9612e+01 1.3 1.96e+09 1.1 0.0e+00 0.0e+00
> 3.5e+02 22 8 0 0 33 22 8 0 0 33 3602
> VecCopy 351 1.0 8.8359e+00 7.7 0.00e+00 0.0 0.0e+00 0.0e+00
> 0.0e+00 2 0 0 0 0 2 0 0 0 0 0
> VecSet 2 1.0 1.6177e-02 2.6 0.00e+00 0.0 0.0e+00 0.0e+00
> 0.0e+00 0 0 0 0 0 0 0 0 0 0 0
> VecAXPY 696 1.0 8.8559e+01 1.1 3.92e+09 1.1 0.0e+00 0.0e+00
> 0.0e+00 42 16 0 0 0 42 16 0 0 0 4024
> VecAYPX 347 1.0 4.6790e+00 1.2 1.95e+09 1.1 0.0e+00 0.0e+00
> 0.0e+00 2 8 0 0 0 2 8 0 0 0 37970
> VecAssemblyBegin 2 1.0 5.0942e-02 2.9 0.00e+00 0.0 0.0e+00 0.0e+00
> 6.0e+00 0 0 0 0 1 0 0 0 0 1 0
> VecAssemblyEnd 2 1.0 1.9073e-05 6.7 0.00e+00 0.0 0.0e+00 0.0e+00
> 0.0e+00 0 0 0 0 0 0 0 0 0 0 0
> VecScatterBegin 348 1.0 1.2763e+00 1.5 0.00e+00 0.0 4.6e+05 2.0e+05
> 0.0e+00 0 0 97100 0 0 0 97100 0 0
> VecScatterEnd 348 1.0 4.6741e+00 5.6 0.00e+00 0.0 0.0e+00 0.0e+00
> 0.0e+00 1 0 0 0 0 1 0 0 0 0 0
> MatMult 348 1.0 2.8440e+01 1.1 1.27e+10 1.1 4.6e+05 2.0e+05
> 0.0e+00 13 52 97100 0 13 52 97100 0 40722
> MatAssemblyBegin 1 1.0 7.4749e-0124.5 0.00e+00 0.0 0.0e+00 0.0e+00
> 2.0e+00 0 0 0 0 0 0 0 0 0 0 0
> MatAssemblyEnd 1 1.0 8.3194e-01 1.0 0.00e+00 0.0 2.7e+03 5.1e+04
> 8.0e+00 0 0 1 0 1 0 0 1 0 1 0
> KSPSetUp 1 1.0 8.2883e-02 1.7 0.00e+00 0.0 0.0e+00 0.0e+00
> 0.0e+00 0 0 0 0 0 0 0 0 0 0 0
> KSPSolve 1 1.0 1.7964e+02 1.0 2.45e+10 1.1 4.6e+05 2.0e+05
> 1.0e+03 87100 97100 98 87100 97100 98 12398
> PCSetUp 1 1.0 1.1921e-06 0.0 0.00e+00 0.0 0.0e+00 0.0e+00
> 0.0e+00 0 0 0 0 0 0 0 0 0 0 0
> PCApply 349 1.0 8.8166e+00 7.8 0.00e+00 0.0 0.0e+00 0.0e+00
> 0.0e+00 2 0 0 0 0 2 0 0 0 0 0
>
>
>
>
> /////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
>
>
> If you need more information or test please let me know.
>
>
> Thanks in advance
>
>
> Here the log of 1536 cores
>
>
> 345 KSP Residual norm 1.007085286893e-02
> 346 KSP Residual norm 1.010054402040e-02
> 347 KSP Residual norm 1.002139574355e-02
> 348 KSP Residual norm 9.775851299055e-03
> Max div for vorticity 1.84572e-05 Integral: 6.62466e-09 130.764 -132
>
> ************************************************************************************************************************
> *** WIDEN YOUR WINDOW TO 120 CHARACTERS. Use 'enscript -r
> -fCourier9' to print this document ***
>
> ************************************************************************************************************************
>
> ---------------------------------------------- PETSc Performance Summary:
> ----------------------------------------------
>
> ./vic_petsc on a arch-linux2-c-opt named taurusi6217 with 1536 processors,
> by incard Thu Jun 15 22:27:09 2017
> Using Petsc Release Version 3.6.4, Apr, 12, 2016
>
> Max Max/Min Avg Total
> Time (sec): 2.312e+02 1.00027 2.312e+02
> Objects: 1.900e+01 1.00000 1.900e+01
> Flops: 1.573e+09 1.32212 1.450e+09 2.227e+12
> Flops/sec: 6.804e+06 1.32242 6.271e+06 9.633e+09
> MPI Messages: 8.202e+03 2.06821 5.871e+03 9.018e+06
> MPI Message Lengths: 2.013e+08 1.86665 2.640e+04 2.381e+11
> MPI Reductions: 1.066e+03 1.00000
>
> Flop counting convention: 1 flop = 1 real number operation of type
> (multiply/divide/add/subtract)
> e.g., VecAXPY() for real vectors of length N
> --> 2N flops
> and VecAXPY() for complex vectors of length N
> --> 8N flops
>
> Summary of Stages: ----- Time ------ ----- Flops ----- --- Messages
> --- -- Message Lengths -- -- Reductions --
> Avg %Total Avg %Total counts
> %Total Avg %Total counts %Total
> 0: Main Stage: 2.3120e+02 100.0% 2.2272e+12 100.0% 9.018e+06
> 100.0% 2.640e+04 100.0% 1.065e+03 99.9%
>
>
> ------------------------------------------------------------------------------------------------------------------------
> See the 'Profiling' chapter of the users' manual for details on
> interpreting output.
> Phase summary info:
> Count: number of times phase was executed
> Time and Flops: Max - maximum over all processors
> Ratio - ratio of maximum to minimum over all processors
> Mess: number of messages sent
> Avg. len: average message length (bytes)
> Reduct: number of global reductions
> Global: entire computation
> Stage: stages of a computation. Set stages with PetscLogStagePush() and
> PetscLogStagePop().
> %T - percent time in this phase %F - percent flops in this
> phase
> %M - percent messages in this phase %L - percent message lengths
> in this phase
> %R - percent reductions in this phase
> Total Mflop/s: 10e-6 * (sum of flops over all processors)/(max time
> over all processors)
>
> ------------------------------------------------------------------------------------------------------------------------
> Event Count Time (sec)
> Flops --- Global --- --- Stage --- Total
> Max Ratio Max Ratio Max Ratio Mess Avg len
> Reduct %T %F %M %L %R %T %F %M %L %R Mflop/s
>
> ------------------------------------------------------------------------------------------------------------------------
>
> --- Event Stage 0: Main Stage
>
> VecTDot 696 1.0 3.4442e+01 1.4 2.52e+08 1.3 0.0e+00 0.0e+00
> 7.0e+02 12 16 0 0 65 12 16 0 0 65 10346
> VecNorm 349 1.0 1.1101e+02 1.1 1.26e+08 1.3 0.0e+00 0.0e+00
> 3.5e+02 46 8 0 0 33 46 8 0 0 33 1610
> VecCopy 351 1.0 2.7609e-01 5.8 0.00e+00 0.0 0.0e+00 0.0e+00
> 0.0e+00 0 0 0 0 0 0 0 0 0 0 0
> VecSet 2 1.0 3.8961e-0256.9 0.00e+00 0.0 0.0e+00 0.0e+00
> 0.0e+00 0 0 0 0 0 0 0 0 0 0 0
> VecAXPY 696 1.0 8.3134e+01 1.1 2.52e+08 1.3 0.0e+00 0.0e+00
> 0.0e+00 34 16 0 0 0 34 16 0 0 0 4286
> VecAYPX 347 1.0 2.0852e-01 2.0 1.25e+08 1.3 0.0e+00 0.0e+00
> 0.0e+00 0 8 0 0 0 0 8 0 0 0 852044
> VecAssemblyBegin 2 1.0 8.3237e-02 1.8 0.00e+00 0.0 0.0e+00 0.0e+00
> 6.0e+00 0 0 0 0 1 0 0 0 0 1 0
> VecAssemblyEnd 2 1.0 5.1022e-0517.8 0.00e+00 0.0 0.0e+00 0.0e+00
> 0.0e+00 0 0 0 0 0 0 0 0 0 0 0
> VecScatterBegin 348 1.0 2.3975e-01 1.8 0.00e+00 0.0 7.7e+06 3.1e+04
> 0.0e+00 0 0 85 99 0 0 0 85 99 0 0
> VecScatterEnd 348 1.0 2.8680e+00 1.8 0.00e+00 0.0 0.0e+00 0.0e+00
> 0.0e+00 1 0 0 0 0 1 0 0 0 0 0
> MatMult 348 1.0 4.1088e+00 1.4 8.18e+08 1.3 7.7e+06 3.1e+04
> 0.0e+00 2 52 85 99 0 2 52 85 99 0 281866
> MatAssemblyBegin 1 1.0 9.1920e-02 3.4 0.00e+00 0.0 0.0e+00 0.0e+00
> 2.0e+00 0 0 0 0 0 0 0 0 0 0 0
> MatAssemblyEnd 1 1.0 3.9093e+00 1.0 0.00e+00 0.0 4.4e+04 7.7e+03
> 8.0e+00 2 0 0 0 1 2 0 0 0 1 0
> KSPSetUp 1 1.0 8.1890e-03 4.3 0.00e+00 0.0 0.0e+00 0.0e+00
> 0.0e+00 0 0 0 0 0 0 0 0 0 0 0
> KSPSolve 1 1.0 2.1525e+02 1.0 1.57e+09 1.3 7.7e+06 3.1e+04
> 1.0e+03 93100 85 99 98 93100 85 99 98 10347
> PCSetUp 1 1.0 5.5075e-05 0.0 0.00e+00 0.0 0.0e+00 0.0e+00
> 0.0e+00 0 0 0 0 0 0 0 0 0 0 0
> PCApply 349 1.0 2.7485e-01 6.0 0.00e+00 0.0 0.0e+00 0.0e+00
> 0.0e+00 0 0 0 0 0 0 0 0 0 0 0
>
> ------------------------------------------------------------------------------------------------------------------------
>
> Memory usage is given in bytes:
>
> Object Type Creations Destructions Memory Descendants' Mem.
> Reports information only for process 0.
>
> --- Event Stage 0: Main Stage
>
> Vector 10 7 7599552 0
> Vector Scatter 1 1 1088 0
> Matrix 3 3 20858912 0
> Krylov Solver 1 1 1216 0
> Index Set 2 2 242288 0
> Preconditioner 1 1 816 0
> Viewer 1 0 0 0
>
> ========================================================================================================================
> Average time to get PetscTime(): 9.53674e-08
> Average time for MPI_Barrier(): 3.68118e-05
> Average time for zero size MPI_Send(): 3.24349e-06
> #PETSc Option Table entries:
> -ksp_atol 0.010000
> -ksp_max_it 500
> -ksp_monitor
> -ksp_type cg
> -log_summary
> #End of PETSc Option Table entries
> Compiled without FORTRAN kernels
> Compiled with full precision matrices (default)
> sizeof(short) 2 sizeof(int) 4 sizeof(long) 8 sizeof(void*) 8
> sizeof(PetscScalar) 8 sizeof(PetscInt) 4
> Configure options: --with-cxx-dialect=C++11
> --with-mpi-dir=/sw/taurus/libraries/openmpi/1.10.2-gnu --with-parmetis=yes
> --with-parmetis-dir=/scratch/p_ppm//PARMETIS/ --with-metis=yes
> --with-metis-dir=/scratch/p_ppm//METIS --with-boost=yes
> --with-boost-dir=/scratch/p_ppm//BOOST
> --with-blas-lib=/scratch/p_ppm//OPENBLAS/lib/libopenblas.a
> --with-lapack-lib=/scratch/p_ppm//OPENBLAS/lib/libopenblas.a
> --with-suitesparse=yes --with-suitesparse-dir=/scratch/p_ppm//SUITESPARSE
> --with-trilinos=yes -with-trilinos-dir=/scratch/p_ppm//TRILINOS
> --with-scalapack=yes -with-scalapack-dir=/scratch/p_ppm//SCALAPACK
> --with-mumps=yes --with-mumps-include=/scratch/p_ppm//MUMPS/include
> --with-superlu_dist=yes
> --with-superlu_dist-lib=/scratch/p_ppm//SUPERLU_DIST/lib/libsuperlu_dist_4.3.a
> --with-superlu_dist-include=/scratch/p_ppm//SUPERLU_DIST/include/
> --with-hypre=yes -with-hypre-dir=/scratch/p_ppm//HYPRE
> --with-mumps-lib=""/scratch/p_ppm//MUMPS/lib/libdmumps.a
> /scratch/p_ppm//MUMPS/lib/libmumps_common.a
> /scratch/p_ppm//MUMPS/lib/libpord.a"" --prefix=/scratch/p_ppm//PETSC
> --with-debugging=0
> -----------------------------------------
> Libraries compiled on Wed Feb 22 17:30:49 2017 on tauruslogin4
> Machine characteristics:
> Linux-2.6.32-642.11.1.el6.Bull.106.x86_64-x86_64-with-redhat-6.8-Santiago
> Using PETSc directory:
> /lustre/scratch2/p_ppm/jenkins2/workspace/OpenFPM_high_scal_tests/petsc-3.6.4
> Using PETSc arch: arch-linux2-c-opt
> -----------------------------------------
>
> Using C compiler: /sw/taurus/libraries/openmpi/1.10.2-gnu/bin/mpicc -fPIC
> -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O
> ${COPTFLAGS} ${CFLAGS}
> Using Fortran compiler:
> /sw/taurus/libraries/openmpi/1.10.2-gnu/bin/mpif90 -fPIC -Wall
> -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O
> ${FOPTFLAGS} ${FFLAGS}
> -----------------------------------------
>
> Using include paths:
> -I/lustre/scratch2/p_ppm/jenkins2/workspace/OpenFPM_high_scal_tests/petsc-3.6.4/arch-linux2-c-opt/include
> -I/lustre/scratch2/p_ppm/jenkins2/workspace/OpenFPM_high_scal_tests/petsc-3.6.4/include
> -I/lustre/scratch2/p_ppm/jenkins2/workspace/OpenFPM_high_scal_tests/petsc-3.6.4/include
> -I/lustre/scratch2/p_ppm/jenkins2/workspace/OpenFPM_high_scal_tests/petsc-3.6.4/arch-linux2-c-opt/include
> -I/scratch/p_ppm/TRILINOS/include -I/scratch/p_ppm/HYPRE/include
> -I/scratch/p_ppm/SUPERLU_DIST/include -I/scratch/p_ppm/SUITESPARSE/include
> -I/scratch/p_ppm/MUMPS/include -I/scratch/p_ppm/PARMETIS/include
> -I/scratch/p_ppm/METIS/include -I/scratch/p_ppm/BOOST/include
> -I/sw/taurus/libraries/openmpi/1.10.2-gnu/include
> -----------------------------------------
>
> Using C linker: /sw/taurus/libraries/openmpi/1.10.2-gnu/bin/mpicc
> Using Fortran linker: /sw/taurus/libraries/openmpi/1.10.2-gnu/bin/mpif90
> Using libraries:
> -Wl,-rpath,/lustre/scratch2/p_ppm/jenkins2/workspace/OpenFPM_high_scal_tests/petsc-3.6.4/arch-linux2-c-opt/lib
> -L/lustre/scratch2/p_ppm/jenkins2/workspace/OpenFPM_high_scal_tests/petsc-3.6.4/arch-linux2-c-opt/lib
> -lpetsc -Wl,-rpath,/scratch/p_ppm/TRILINOS/lib
> -L/scratch/p_ppm/TRILINOS/lib -lpike-blackbox -ltrilinoscouplings -lmsqutil
> -lmesquite -lctrilinos -lsundancePdeopt -lsundanceStdFwk -lsundanceStdMesh
> -lsundanceCore -lsundanceInterop -lsundanceUtils -lsundancePlaya -lpiro
> -lrol -lstokhos_muelu -lstokhos_ifpack2 -lstokhos_amesos2 -lstokhos_tpetra
> -lstokhos_sacado -lstokhos -lmoochothyra -lmoocho -lrythmos
> -lmuelu-adapters -lmuelu-interface -lmuelu -lmoertel -llocathyra
> -llocaepetra -llocalapack -lloca -lnoxepetra -lnoxlapack -lnox -lphalanx
> -lstk_mesh_fixtures -lstk_search_util_base -lstk_search
> -lstk_unit_test_utils -lstk_io_util -lstk_io -lstk_mesh_base -lstk_topology
> -lstk_util_use_cases -lstk_util_registry -lstk_util_diag -lstk_util_env
> -lstk_util_util -lstkclassic_search_util -lstkclassic_search
> -lstkclassic_rebalance_utils -lstkclassic_rebalance -lstkclassic_linsys
> -lstkclassic_io_util -lstkclassic_io -lstkclassic_expreval
> -lstkclassic_algsup -lstkclassic_mesh_fem -lstkclassic_mesh_base
> -lstkclassic_util_use_cases -lstkclassic_util_unit_test_support
> -lstkclassic_util_parallel -lstkclassic_util_diag -lstkclassic_util_env
> -lstkclassic_util_util -lstk_mesh_fixtures -lstk_search_util_base
> -lstk_search -lstk_unit_test_utils -lstk_io_util -lstk_io -lstk_mesh_base
> -lstk_topology -lstk_util_use_cases -lstk_util_registry -lstk_util_diag
> -lstk_util_env -lstk_util_util -lstkclassic_search_util -lstkclassic_search
> -lstkclassic_rebalance_utils -lstkclassic_rebalance -lstkclassic_linsys
> -lstkclassic_io_util -lstkclassic_io -lstkclassic_expreval
> -lstkclassic_algsup -lstkclassic_mesh_fem -lstkclassic_mesh_base
> -lstkclassic_util_use_cases -lstkclassic_util_unit_test_support
> -lstkclassic_util_parallel -lstkclassic_util_diag -lstkclassic_util_env
> -lstkclassic_util_util -lintrepid -lteko -lfei_trilinos -lfei_base
> -lstratimikos -lstratimikosbelos -lstratimikosaztecoo -lstratimikosamesos
> -lstratimikosml -lstratimikosifpack -lifpack2-adapters -lifpack2
> -lanasazitpetra -lModeLaplace -lanasaziepetra -lanasazi -lkomplex -lsupes
> -laprepro_lib -lchaco -lIonit -lIotr -lIohb -lIogn -lIopg -lIoss -lsupes
> -laprepro_lib -lchaco -lIonit -lIotr -lIohb -lIogn -lIopg -lIoss -lamesos2
> -lshylu -lbelostpetra -lbelosepetra -lbelos -lml -lifpack -lzoltan2
> -lpamgen_extras -lpamgen -lamesos -lgaleri-xpetra -lgaleri-epetra -laztecoo
> -ldpliris -lisorropia -loptipack -lxpetra-sup -lxpetra -lthyratpetra
> -lthyraepetraext -lthyraepetra -lthyracore -lthyratpetra -lthyraepetraext
> -lthyraepetra -lthyracore -lepetraext -ltpetraext -ltpetrainout -ltpetra
> -lkokkostsqr -ltpetrakernels -ltpetraclassiclinalg -ltpetraclassicnodeapi
> -ltpetraclassic -ltpetraext -ltpetrainout -ltpetra -lkokkostsqr
> -ltpetrakernels -ltpetraclassiclinalg -ltpetraclassicnodeapi
> -ltpetraclassic -ltriutils -lglobipack -lshards -lzoltan -lepetra -lsacado
> -lrtop -lteuchoskokkoscomm -lteuchoskokkoscompat -lteuchosremainder
> -lteuchosnumerics -lteuchoscomm -lteuchosparameterlist -lteuchoscore
> -lteuchoskokkoscomm -lteuchoskokkoscompat -lteuchosremainder
> -lteuchosnumerics -lteuchoscomm -lteuchosparameterlist -lteuchoscore
> -lkokkosalgorithms -lkokkoscontainers -lkokkoscore -lkokkosalgorithms
> -lkokkoscontainers -lkokkoscore -ltpi -lgtest -lpthread
> -Wl,-rpath,/scratch/p_ppm/HYPRE/lib -L/scratch/p_ppm/HYPRE/lib -lHYPRE
> -Wl,-rpath,/sw/taurus/libraries/openmpi/1.10.2-gnu/lib
> -L/sw/taurus/libraries/openmpi/1.10.2-gnu/lib
> -Wl,-rpath,/sw/global/compilers/gcc/5.3.0/lib64
> -L/sw/global/compilers/gcc/5.3.0/lib64
> -Wl,-rpath,/sw/global/compilers/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0
> -L/sw/global/compilers/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0
> -Wl,-rpath,/sw/global/compilers/gcc/5.3.0/libexec/gcc/x86_64-unknown-linux-gnu/5.3.0
> -L/sw/global/compilers/gcc/5.3.0/libexec/gcc/x86_64-unknown-linux-gnu/5.3.0
> -Wl,-rpath,/sw/global/compilers/gcc/5.3.0/x86_64-unknown-linux-gnu/lib
> -L/sw/global/compilers/gcc/5.3.0/x86_64-unknown-linux-gnu/lib
> -Wl,-rpath,/sw/global/compilers/gcc/5.3.0/lib
> -L/sw/global/compilers/gcc/5.3.0/lib -lmpi_cxx -lstdc++
> -Wl,-rpath,/scratch/p_ppm//SUPERLU_DIST/lib
> -L/scratch/p_ppm//SUPERLU_DIST/lib -lsuperlu_dist_4.3
> -Wl,-rpath,/scratch/p_ppm/SUITESPARSE/lib -L/scratch/p_ppm/SUITESPARSE/lib
> -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd
> -lsuitesparseconfig -lrt -ldmumps -Wl,-rpath,/scratch/p_ppm//MUMPS/lib
> -L/scratch/p_ppm//MUMPS/lib -lmumps_common -lpord
> -Wl,-rpath,/scratch/p_ppm/SCALAPACK/lib -L/scratch/p_ppm/SCALAPACK/lib
> -lscalapack -Wl,-rpath,/scratch/p_ppm//OPENBLAS/lib
> -L/scratch/p_ppm//OPENBLAS/lib -lopenblas
> -Wl,-rpath,/scratch/p_ppm/PARMETIS/lib -L/scratch/p_ppm/PARMETIS/lib
> -lparmetis -Wl,-rpath,/scratch/p_ppm/METIS/lib -L/scratch/p_ppm/METIS/lib
> -lmetis -lX11 -lhwloc -lssl -lcrypto -lm -lmpi_usempi -lmpi_mpifh
> -lgfortran -lm -lgfortran -lm -lquadmath -lm -lmpi_cxx -lstdc++
> -Wl,-rpath,/sw/taurus/libraries/openmpi/1.10.2-gnu/lib
> -L/sw/taurus/libraries/openmpi/1.10.2-gnu/lib
> -Wl,-rpath,/sw/global/compilers/gcc/5.3.0/lib64
> -L/sw/global/compilers/gcc/5.3.0/lib64
> -Wl,-rpath,/sw/global/compilers/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0
> -L/sw/global/compilers/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0
> -Wl,-rpath,/sw/global/compilers/gcc/5.3.0/lib64
> -L/sw/global/compilers/gcc/5.3.0/lib64
> -Wl,-rpath,/sw/global/compilers/gcc/5.3.0/lib64
> -L/sw/global/compilers/gcc/5.3.0/lib64
> -Wl,-rpath,/sw/global/compilers/gcc/5.3.0/libexec/gcc/x86_64-unknown-linux-gnu/5.3.0
> -L/sw/global/compilers/gcc/5.3.0/libexec/gcc/x86_64-unknown-linux-gnu/5.3.0
> -Wl,-rpath,/sw/global/compilers/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0
> -L/sw/global/compilers/gcc/5.3.0/lib/gcc/x86_64-unknown-linux-gnu/5.3.0
> -Wl,-rpath,/sw/global/compilers/gcc/5.3.0/x86_64-unknown-linux-gnu/lib
> -L/sw/global/compilers/gcc/5.3.0/x86_64-unknown-linux-gnu/lib
> -Wl,-rpath,/sw/global/compilers/gcc/5.3.0/lib
> -L/sw/global/compilers/gcc/5.3.0/lib -ldl
> -Wl,-rpath,/sw/taurus/libraries/openmpi/1.10.2-gnu/lib -lmpi -lgcc_s
> -lpthread -ldl
> -----------------------------------------
>
> Regards
>
> Pietro Incardona
>
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