[petsc-users] configure PETSc on Cray
Sharp Stone
thronesf at gmail.com
Fri Feb 10 13:31:09 CST 2017
Thank you all for the replies.
I'm using Cray XE6M-200, and compilers of gcc/g++/gfortran (by default).
The module list is:
Currently Loaded Modulefiles:
1) modules/3.2.6.7
2) nodestat/2.2-1.0402.39779.3.4.gem
3) sdb/1.0-1.0402.41597.10.13.gem
4) MySQL/5.0.64-1.0000.5053.22.1
5)
lustre-cray_gem_s/1.8.6_2.6.32.59_0.7.1_1.0402.6998.7.1-1.0402.41312.15.19
6) udreg/2.3.2-1.0402.6376.3.1.gem
7) ugni/5.0-1.0402.6488.5.7.gem
8) gni-headers/2.1-1.0402.6487.6.4.gem
9) dmapp/4.0.1-1.0402.6266.5.11.gem
10) xpmem/0.1-2.0402.39965.2.5.gem
11) hss-llm/7.0.0
12) Base-opts/1.0.2-1.0402.38884.1.2.gem
13) craype-network-gemini
14) xt-asyncpe/5.19
15) cce/8.1.7
16) cray-libsci/12.0.01
17) pmi/4.0.1-1.0000.9421.73.3.gem
18) rca/1.0.0-2.0402.39780.3.94.gem
19) atp/1.6.2
20) PrgEnv-cray/4.2.15
21) pbs/11.3.1.122650
22) cray-mpich2/5.6.4
23) cray-hdf5-parallel/1.8.9
Thanks in advance!
On Fri, Feb 10, 2017 at 2:01 PM, Satish Balay <balay at mcs.anl.gov> wrote:
> On Fri, 10 Feb 2017, Patrick Sanan wrote:
>
> > On Fri, Feb 10, 2017 at 7:20 PM, Sharp Stone <thronesf at gmail.com> wrote:
> > > Thanks for the replies.
> > >
> > > The PETSc is installed on the Cray I'm using, but the version is too
> old
> > > cray-petsc/3.3.04.
> > > I've still got two questions:
> > >
> > > 1. how can I use the installed cray-petsc? I've used module load
> cray-petsc,
> > > but I can't find the path of petsc, which is required in the makefile.
> > You can use
> >
> > module show cray-petsc
> >
> > to at least get some more hints as to what cray did, PETSc-wise.
>
> Ok this is old version - and you might want to avoid it. The way to
> use it would be - without petsc makefiles. i.e you would compile with:
>
> cc code.c
>
>
> > >
> > > 2. Therefore, I decided to configure the latest version of Petsc. When
> i use
> > > ./config/configure.py --with-cc=cc --with-cxx=CC --with-fc=ftn, it
> give me
> > > the errors
>
> send configure.log
>
> What type of cray machine is this? Also what compilers are you using? send
> module list
>
> Satish
>
>
> > > ************************************************************
> *******************
> > > UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log
> for
> > > details):
> > > ------------------------------------------------------------
> -------------------
> > > C libraries cannot directly be used from Fortran
> > >
> > > In the log file, I found these:
> > > ************************************************************
> *******************
> > > UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log
> for
> > > details):
> > > ------------------------------------------------------------
> -------------------
> > > C libraries cannot directly be used from Fortran
> > > ************************************************************
> *******************
> > > File "./config/configure.py", line 405, in petsc_configure
> > > framework.configure(out = sys.stdout)
> > > File
> > > "/mnt/lustre/lus0/space/fs1036/local/PETSc/petsc-3.7.
> 4/config/BuildSystem/config/framework.py",
> > > line 1090, in configure
> > > self.processChildren()
> > > File
> > > "/mnt/lustre/lus0/space/fs1036/local/PETSc/petsc-3.7.
> 4/config/BuildSystem/config/framework.py",
> > > line 1079, in processChildren
> > > self.serialEvaluation(self.childGraph)
> > > File
> > > "/mnt/lustre/lus0/space/fs1036/local/PETSc/petsc-3.7.
> 4/config/BuildSystem/config/framework.py",
> > > line 1060, in serialEvaluation
> > > child.configure()
> > > File
> > > "/mnt/lustre/lus0/space/fs1036/local/PETSc/petsc-3.7.
> 4/config/BuildSystem/config/compilers.py",
> > > line 1438, in configure
> > > self.executeTest(self.checkCLibraries)
> > > File
> > > "/mnt/lustre/lus0/space/fs1036/local/PETSc/petsc-3.7.
> 4/config/BuildSystem/config/base.py",
> > > line 126, in executeTest
> > > ret = test(*args,**kargs)
> > > File
> > > "/mnt/lustre/lus0/space/fs1036/local/PETSc/petsc-3.7.
> 4/config/BuildSystem/config/compilers.py",
> > > line 313, in checkCLibraries
> > > raise RuntimeError('C libraries cannot directly be used from
> Fortran')
> > > ============================================================
> ====================
> > > Finishing Configure Run at Fri Feb 10 13:07:10 2017
> > > ============================================================
> ====================
> > >
> > >
> > > Thank you again for your help!
> > >
> > > On Fri, Feb 10, 2017 at 1:01 PM, Satish Balay <balay at mcs.anl.gov>
> wrote:
> > >>
> > >> check config/examples/arch-cray-xt6-pkgs-opt.py
> > >>
> > >> Also check if your machine already has petsc [from cray] installed
> > >>
> > >> module avail petsc
> > >>
> > >> Satish
> > >>
> > >> On Fri, 10 Feb 2017, Patrick Sanan wrote:
> > >>
> > >> > You're missing the 'g' in 'configure.py'.
> > >> >
> > >> > On Fri, Feb 10, 2017 at 6:51 PM, Sharp Stone <thronesf at gmail.com>
> wrote:
> > >> > > Hi all,
> > >> > >
> > >> > > I noticed the instructions of Petsc with MPI. Now I'm using Cray.
> So
> > >> > > the
> > >> > > instruction:
> > >> > >
> > >> > > Vendor provided MPI might already be installed. IBM, SGI, Cray etc
> > >> > > provide
> > >> > > their own:
> > >> > > ./config/confiure.py --with-cc=mpcc --with-fc=mpf77
> > >> > >
> > >> > > When I use the command "./config/confiure.py --with-cc=mpcc
> > >> > > --with-fc=mpf77", it gives me the error "-bash:
> ./config/confiure.py:
> > >> > > No
> > >> > > such file or directory". But the file "confiure.py" is there in
> the
> > >> > > "config"
> > >> > > folder.
> > >> > >
> > >> > > What should I do?
> > >> > >
> > >> > > Thanks very much!
> > >> > >
> > >> > > --
> > >> > > Best regards,
> > >> > >
> > >> > > Feng
> > >> >
> > >>
> > >
> > >
> > >
> > > --
> > > Best regards,
> > >
> > > Feng
> >
>
>
--
Best regards,
Feng
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