[petsc-users] Error during compiling my own code
Matthew Knepley
knepley at gmail.com
Fri Sep 23 10:06:00 CDT 2016
On Fri, Sep 23, 2016 at 10:01 AM, Melanie Li Sing How <ml2448 at cornell.edu>
wrote:
> make[1]: Entering directory `/glade/u/home/lisingh/hippstr2.0/src'
> make[2]: Entering directory `/glade/u/home/lisingh/hippstr2.0/src/library'
> make[2]: `/glade/u/home/lisingh/hippstr2.0/lib/liblibrary.a' is up to
> date.
> make[2]: Leaving directory `/glade/u/home/lisingh/hippstr2.0/src/library'
> make[2]: Entering directory `/glade/u/home/lisingh/hippstr2.0/src/p3dfft'
> make[2]: `/glade/u/home/lisingh/hippstr2.0/lib/libp3dfft.a' is up to date.
> make[2]: Leaving directory `/glade/u/home/lisingh/hippstr2.0/src/p3dfft'
> make[2]: Entering directory `/glade/u/home/lisingh/hippstr2.0/src/config'
> make[2]: `/glade/u/home/lisingh/hippstr2.0/lib/libconfig.a' is up to date.
> make[2]: Leaving directory `/glade/u/home/lisingh/hippstr2.0/src/config'
> make[2]: Entering directory `/glade/u/home/lisingh/hippstr2.0/src/fluid'
> make[2]: `/glade/u/home/lisingh/hippstr2.0/lib/libfluid.a' is up to date.
> make[2]: Leaving directory `/glade/u/home/lisingh/hippstr2.0/src/fluid'
> make[2]: Entering directory `/glade/u/home/lisingh/
> hippstr2.0/src/particles'
> mpif90 -O2 -ip -I/glade/u/home/lisingh/hippstr2.0/mod -c
> particles_global.f90 -o /glade/u/home/lisingh/hippstr2.0/obj/particles_global.o
> -module /glade/u/home/lisingh/hippstr2.0/mod
> /opt/ibmhpc/pecurrent/mpich2/intel/include64/mpif.h(9): error #6401: The
> attributes of this name conflict with those made accessible by a USE
> statement. [MPI_SOURCE]
> INTEGER MPI_SOURCE, MPI_TAG, MPI_ERROR
> ---------------^
> /opt/ibmhpc/pecurrent/mpich2/intel/include64/mpif.h(9): error #6401: The
> attributes of this name conflict with those made accessible by a USE
> statement. [MPI_TAG]
> INTEGER MPI_SOURCE, MPI_TAG, MPI_ERROR
> ---------------------------^
> /opt/ibmhpc/pecurrent/mpich2/intel/include64/mpif.h(9): error #6401: The
> attributes of this name conflict with those made accessible by a USE
> statement. [MPI_ERROR]
> INTEGER MPI_SOURCE, MPI_TAG, MPI_ERROR
> ------------------------------------^
> /opt/ibmhpc/pecurrent/mpich2/intel/include64/mpif.h(11): error #6401: The
> attributes of this name conflict with those made accessible by a USE
> statement. [MPI_STATUS_SIZE]
> INTEGER MPI_STATUS_SIZE
> ---------------^
> /opt/ibmhpc/pecurrent/mpich2/intel/include64/mpif.h(13): error #6401: The
> attributes of this name conflict with those made accessible by a USE
> statement. [MPI_STATUS_IGNORE]
> INTEGER MPI_STATUS_IGNORE(MPI_STATUS_SIZE)
> ---------------^
> /opt/ibmhpc/pecurrent/mpich2/intel/include64/mpif.h(14): error #6401: The
> attributes of this name conflict with those made accessible by a USE
> statement. [MPI_STATUSES_IGNORE]
> INTEGER MPI_STATUSES_IGNORE(MPI_STATUS_SIZE,1)
> ---------------^
> /opt/ibmhpc/pecurrent/mpich2/intel/include64/mpif.h(15): error #6401: The
> attributes of this name conflict with those made accessible by a USE
> statement. [MPI_ERRCODES_IGNORE]
> INTEGER MPI_ERRCODES_IGNORE(1)
> ---------------^
> /opt/ibmhpc/pecurrent/mpich2/intel/include64/mpif.h(16): error #6401: The
> attributes of this name conflict with those made accessible by a USE
> statement. [MPI_ARGVS_NULL]
> CHARACTER*1 MPI_ARGVS_NULL(1,1)
> -------------------^
> /opt/ibmhpc/pecurrent/mpich2/intel/include64/mpif.h(17): error #6401: The
> attributes of this name conflict with those made accessible by a USE
> statement. [MPI_ARGV_NULL]
> CHARACTER*1 MPI_ARGV_NULL(1)
> -------------------^
> /opt/ibmhpc/pecurrent/mpich2/intel/include64/mpif.h(18): error #6401: The
> attributes of this name conflict with those made accessible by a USE
> statement. [MPI_SUCCESS]
> INTEGER MPI_SUCCESS
> ---------------^
> /opt/ibmhpc/pecurrent/mpich2/intel/include64/mpif.h(20): error #6401: The
> attributes of this name conflict with those made accessible by a USE
> statement. [MPI_ERR_OTHER]
> INTEGER MPI_ERR_OTHER
> ---------------^
> /opt/ibmhpc/pecurrent/mpich2/intel/include64/mpif.h(22): error #6401: The
> attributes of this name conflict with those made accessible by a USE
> statement. [MPI_ERR_COUNT]
> INTEGER MPI_ERR_COUNT
> ---------------^
> /opt/ibmhpc/pecurrent/mpich2/intel/include64/mpif.h(24): error #6401: The
> attributes of this name conflict with those made accessible by a USE
> statement. [MPI_ERR_SPAWN]
> INTEGER MPI_ERR_SPAWN
> ---------------^
> /opt/ibmhpc/pecurrent/mpich2/intel/include64/mpif.h(26): error #6401: The
> attributes of this name conflict with those made accessible by a USE
> statement. [MPI_ERR_LOCKTYPE]
> INTEGER MPI_ERR_LOCKTYPE
> ---------------^
> /opt/ibmhpc/pecurrent/mpich2/intel/include64/mpif.h(28): error #6401: The
> attributes of this name conflict with those made accessible by a USE
> statement. [MPI_ERR_OP]
> INTEGER MPI_ERR_OP
> ---------------^
> /opt/ibmhpc/pecurrent/mpich2/intel/include64/mpif.h(30): error #6401: The
> attributes of this name conflict with those made accessible by a USE
> statement. [MPI_ERR_DUP_DATAREP]
> INTEGER MPI_ERR_DUP_DATAREP
> ---------------^
> /opt/ibmhpc/pecurrent/mpich2/intel/include64/mpif.h(32): error #6401: The
> attributes of this name conflict with those made accessible by a USE
> statement. [MPI_ERR_UNSUPPORTED_DATAREP]
> INTEGER MPI_ERR_UNSUPPORTED_DATAREP
> ---------------^
> /opt/ibmhpc/pecurrent/mpich2/intel/include64/mpif.h(34): error #6401: The
> attributes of this name conflict with those made accessible by a USE
> statement. [MPI_ERR_TRUNCATE]
> INTEGER MPI_ERR_TRUNCATE
> ---------------^
> /opt/ibmhpc/pecurrent/mpich2/intel/include64/mpif.h(36): error #6401: The
> attributes of this name conflict with those made accessible by a USE
> statement. [MPI_ERR_INFO_NOKEY]
> INTEGER MPI_ERR_INFO_NOKEY
> ---------------^
> /opt/ibmhpc/pecurrent/mpich2/intel/include64/mpif.h(38): error #6401: The
> attributes of this name conflict with those made accessible by a USE
> statement. [MPI_ERR_ASSERT]
> INTEGER MPI_ERR_ASSERT
> ---------------^
> /opt/ibmhpc/pecurrent/mpich2/intel/include64/mpif.h(40): error #6401: The
> attributes of this name conflict with those made accessible by a USE
> statement. [MPI_ERR_FILE_EXISTS]
> INTEGER MPI_ERR_FILE_EXISTS
> ---------------^
> /opt/ibmhpc/pecurrent/mpich2/intel/include64/mpif.h(42): error #6401: The
> attributes of this name conflict with those made accessible by a USE
> statement. [MPI_ERR_PENDING]
> INTEGER MPI_ERR_PENDING
> ---------------^
> /opt/ibmhpc/pecurrent/mpich2/intel/include64/mpif.h(44): error #6401: The
> attributes of this name conflict with those made accessible by a USE
> statement. [MPI_ERR_COMM]
> INTEGER MPI_ERR_COMM
> ---------------^
> /opt/ibmhpc/pecurrent/mpich2/intel/include64/mpif.h(46): error #6401: The
> attributes of this name conflict with those made accessible by a USE
> statement. [MPI_ERR_KEYVAL]
> INTEGER MPI_ERR_KEYVAL
> ---------------^
> /opt/ibmhpc/pecurrent/mpich2/intel/include64/mpif.h(48): error #6401: The
> attributes of this name conflict with those made accessible by a USE
> statement. [MPI_ERR_NAME]
> INTEGER MPI_ERR_NAME
> ---------------^
> /opt/ibmhpc/pecurrent/mpich2/intel/include64/mpif.h(50): error #6401: The
> attributes of this name conflict with those made accessible by a USE
> statement. [MPI_ERR_REQUEST]
> INTEGER MPI_ERR_REQUEST
> ---------------^
> /opt/ibmhpc/pecurrent/mpich2/intel/include64/mpif.h(52): error #6401: The
> attributes of this name conflict with those made accessible by a USE
> statement. [MPI_ERR_TYPE]
> INTEGER MPI_ERR_TYPE
> ---------------^
> /opt/ibmhpc/pecurrent/mpich2/intel/include64/mpif.h(54): error #6401: The
> attributes of this name conflict with those made accessible by a USE
> statement. [MPI_ERR_INFO_VALUE]
> INTEGER MPI_ERR_INFO_VALUE
> ---------------^
> /opt/ibmhpc/pecurrent/mpich2/intel/include64/mpif.h(56): error #6401: The
> attributes of this name conflict with those made accessible by a USE
> statement. [MPI_ERR_RMA_SYNC]
> INTEGER MPI_ERR_RMA_SYNC
> ---------------^
> /opt/ibmhpc/pecurrent/mpich2/intel/include64/mpif.h(58): error #6401: The
> attributes of this name conflict with those made accessible by a USE
> statement. [MPI_ERR_NO_MEM]
> INTEGER MPI_ERR_NO_MEM
> ---------------^
> particles_global.f90(655): catastrophic error: Too many errors, exiting
> compilation aborted for particles_global.f90 (code 1)
> make[2]: *** [particles_global.o] Error 1
> make[2]: Leaving directory `/glade/u/home/lisingh/
> hippstr2.0/src/particles'
> make[2]: Entering directory `/glade/u/home/lisingh/hippstr2.0/src/io'
> make[2]: `/glade/u/home/lisingh/hippstr2.0/lib/libio.a' is up to date.
> make[2]: Leaving directory `/glade/u/home/lisingh/hippstr2.0/src/io'
> make[2]: Entering directory `/glade/u/home/lisingh/hippstr2.0/src/monitor'
> make[2]: `/glade/u/home/lisingh/hippstr2.0/lib/libmonitor.a' is up to
> date.
> make[2]: Leaving directory `/glade/u/home/lisingh/hippstr2.0/src/monitor'
> make[2]: Entering directory `/glade/u/home/lisingh/hippstr2.0/src/core'
> make[2]: `/glade/u/home/lisingh/hippstr2.0/lib/libcore.a' is up to date.
> make[2]: Leaving directory `/glade/u/home/lisingh/hippstr2.0/src/core'
> make[1]: Leaving directory `/glade/u/home/lisingh/hippstr2.0/src'
> make[1]: Entering directory `/glade/u/home/lisingh/hippstr2.0/src'
> mpif90 /glade/u/home/lisingh/hippstr2.0/obj/driver.o
> /glade/u/home/lisingh/hippstr2.0/lib/libcore.a /glade/u/home/lisingh/hippstr2.0/lib/libmonitor.a
> /glade/u/home/lisingh/hippstr2.0/lib/libio.a /glade/u/home/lisingh/hippstr2.0/lib/libparticles.a
> /glade/u/home/lisingh/hippstr2.0/lib/libfluid.a /glade/u/home/lisingh/hippstr2.0/lib/libconfig.a
> /glade/u/home/lisingh/hippstr2.0/lib/libp3dfft.a /glade/u/home/lisingh/hippstr2.0/lib/liblibrary.a
> -o /glade/u/home/lisingh/hippstr2.0/bin/hippstr
> ld: warning: libhdf5_hl.so.7, needed by /glade/apps/opt/netcdf/4.2/
> intel/default/lib/libnetcdf_c++4.so.1, may conflict with libhdf5_hl.so.8
> ld: warning: libhdf5.so.7, needed by /glade/apps/opt/netcdf/4.2/
> intel/default/lib/libnetcdf_c++4.so.1, may conflict with libhdf5.so.8
> ld: warning: libhdf5_fortran.so.7, needed by /glade/apps/opt/netcdf/4.2/
> intel/default/lib/libnetcdf.so.7, may conflict with libhdf5_fortran.so.8
> ld: warning: libhdf5hl_fortran.so.7, needed by /glade/apps/opt/netcdf/4.2/
> intel/default/lib/libnetcdf.so.7, may conflict with libhdf5hl_fortran.so.8
> ld: warning: libhdf5_cpp.so.7, needed by /glade/apps/opt/netcdf/4.2/
> intel/default/lib/libnetcdf.so.7, may conflict with libhdf5_cpp.so.8
> ld: warning: libhdf5_hl_cpp.so.7, needed by /glade/apps/opt/netcdf/4.2/
> intel/default/lib/libnetcdf.so.7, may conflict with libhdf5_hl_cpp.so.8
> /glade/u/home/lisingh/hippstr2.0/lib/libcore.a(simulation.o): In function
> `simulation_mp_simulation_run_':
> simulation.f90:(.text+0x139): undefined reference to
> `particles_neighborlist_'
> make[1]: *** [hippstr] Error 1
> make[1]: Leaving directory `/glade/u/home/lisingh/hippstr2.0/src'
> make: *** [default] Error 2
>
> Would it be easier to send you the two modules that I think are
> conflicting? Thank you so much
>
No. This is not really a PETSc error. You have some module that does
something like "use mpi", and another
that probably does #include "mpif.h". We can't debug other people's code.
Thanks,
Matt
> On Sep 23, 2016, at 10:59 AM, Matthew Knepley <knepley at gmail.com> wrote:
>
> On Fri, Sep 23, 2016 at 9:53 AM, Melanie Li Sing How <ml2448 at cornell.edu>
> wrote:
>
>> Hi,
>> I happened to fall on your link (http://lists.mcs.anl.gov/pipe
>> rmail/petsc-users/2010-April/006170.html) to the same problem I am
>> having. I am a yellowstone user and I could not find a contact detail for
>> the same error I am having:
>>
>> /error #6401: The attributes of this name conflict with those made
>> accessible by a USE statement. [MPI_TAG]
>> INTEGER MPI_SOURCE, MPI_TAG, MPI_ERROR
>>
>> Could you please provide some advice on this?
>>
>
> As Satish says, show us what you are doing, or at least the whole error
> message.
>
> Matt
>
>
>> Thank you
>>
>>
>
>
> --
> What most experimenters take for granted before they begin their
> experiments is infinitely more interesting than any results to which their
> experiments lead.
> -- Norbert Wiener
>
>
>
--
What most experimenters take for granted before they begin their
experiments is infinitely more interesting than any results to which their
experiments lead.
-- Norbert Wiener
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