[petsc-users] Error during compiling my own code

Fri Sep 23 10:01:00 CDT 2016

make[1]: Entering directory `/glade/u/home/lisingh/hippstr2.0/src'
make[2]: Entering directory `/glade/u/home/lisingh/hippstr2.0/src/library'
make[2]: `/glade/u/home/lisingh/hippstr2.0/lib/liblibrary.a' is up to date.
make[2]: Leaving directory `/glade/u/home/lisingh/hippstr2.0/src/library'
make[2]: Entering directory `/glade/u/home/lisingh/hippstr2.0/src/p3dfft'
make[2]: `/glade/u/home/lisingh/hippstr2.0/lib/libp3dfft.a' is up to date.
make[2]: Leaving directory `/glade/u/home/lisingh/hippstr2.0/src/p3dfft'
make[2]: Entering directory `/glade/u/home/lisingh/hippstr2.0/src/config'
make[2]: `/glade/u/home/lisingh/hippstr2.0/lib/libconfig.a' is up to date.
make[2]: Leaving directory `/glade/u/home/lisingh/hippstr2.0/src/config'
make[2]: Entering directory `/glade/u/home/lisingh/hippstr2.0/src/fluid'
make[2]: `/glade/u/home/lisingh/hippstr2.0/lib/libfluid.a' is up to date.
make[2]: Leaving directory `/glade/u/home/lisingh/hippstr2.0/src/fluid'
make[2]: Entering directory `/glade/u/home/lisingh/hippstr2.0/src/particles'
mpif90 -O2 -ip   -I/glade/u/home/lisingh/hippstr2.0/mod  -c particles_global.f90 -o /glade/u/home/lisingh/hippstr2.0/obj/particles_global.o -module /glade/u/home/lisingh/hippstr2.0/mod
/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpif.h(9): error #6401: The attributes of this name conflict with those made accessible by a USE statement.   [MPI_SOURCE]
       INTEGER MPI_SOURCE, MPI_TAG, MPI_ERROR
---------------^
/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpif.h(9): error #6401: The attributes of this name conflict with those made accessible by a USE statement.   [MPI_TAG]
       INTEGER MPI_SOURCE, MPI_TAG, MPI_ERROR
---------------------------^
/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpif.h(9): error #6401: The attributes of this name conflict with those made accessible by a USE statement.   [MPI_ERROR]
       INTEGER MPI_SOURCE, MPI_TAG, MPI_ERROR
------------------------------------^
/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpif.h(11): error #6401: The attributes of this name conflict with those made accessible by a USE statement.   [MPI_STATUS_SIZE]
       INTEGER MPI_STATUS_SIZE
---------------^
/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpif.h(13): error #6401: The attributes of this name conflict with those made accessible by a USE statement.   [MPI_STATUS_IGNORE]
       INTEGER MPI_STATUS_IGNORE(MPI_STATUS_SIZE)
---------------^
/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpif.h(14): error #6401: The attributes of this name conflict with those made accessible by a USE statement.   [MPI_STATUSES_IGNORE]
       INTEGER MPI_STATUSES_IGNORE(MPI_STATUS_SIZE,1)
---------------^
/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpif.h(15): error #6401: The attributes of this name conflict with those made accessible by a USE statement.   [MPI_ERRCODES_IGNORE]
       INTEGER MPI_ERRCODES_IGNORE(1)
---------------^
/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpif.h(16): error #6401: The attributes of this name conflict with those made accessible by a USE statement.   [MPI_ARGVS_NULL]
       CHARACTER*1 MPI_ARGVS_NULL(1,1)
-------------------^
/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpif.h(17): error #6401: The attributes of this name conflict with those made accessible by a USE statement.   [MPI_ARGV_NULL]
       CHARACTER*1 MPI_ARGV_NULL(1)
-------------------^
/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpif.h(18): error #6401: The attributes of this name conflict with those made accessible by a USE statement.   [MPI_SUCCESS]
       INTEGER MPI_SUCCESS
---------------^
/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpif.h(20): error #6401: The attributes of this name conflict with those made accessible by a USE statement.   [MPI_ERR_OTHER]
       INTEGER MPI_ERR_OTHER
---------------^
/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpif.h(22): error #6401: The attributes of this name conflict with those made accessible by a USE statement.   [MPI_ERR_COUNT]
       INTEGER MPI_ERR_COUNT
---------------^
/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpif.h(24): error #6401: The attributes of this name conflict with those made accessible by a USE statement.   [MPI_ERR_SPAWN]
       INTEGER MPI_ERR_SPAWN
---------------^
/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpif.h(26): error #6401: The attributes of this name conflict with those made accessible by a USE statement.   [MPI_ERR_LOCKTYPE]
       INTEGER MPI_ERR_LOCKTYPE
---------------^
/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpif.h(28): error #6401: The attributes of this name conflict with those made accessible by a USE statement.   [MPI_ERR_OP]
       INTEGER MPI_ERR_OP
---------------^
/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpif.h(30): error #6401: The attributes of this name conflict with those made accessible by a USE statement.   [MPI_ERR_DUP_DATAREP]
       INTEGER MPI_ERR_DUP_DATAREP
---------------^
/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpif.h(32): error #6401: The attributes of this name conflict with those made accessible by a USE statement.   [MPI_ERR_UNSUPPORTED_DATAREP]
       INTEGER MPI_ERR_UNSUPPORTED_DATAREP
---------------^
/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpif.h(34): error #6401: The attributes of this name conflict with those made accessible by a USE statement.   [MPI_ERR_TRUNCATE]
       INTEGER MPI_ERR_TRUNCATE
---------------^
/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpif.h(36): error #6401: The attributes of this name conflict with those made accessible by a USE statement.   [MPI_ERR_INFO_NOKEY]
       INTEGER MPI_ERR_INFO_NOKEY
---------------^
/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpif.h(38): error #6401: The attributes of this name conflict with those made accessible by a USE statement.   [MPI_ERR_ASSERT]
       INTEGER MPI_ERR_ASSERT
---------------^
/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpif.h(40): error #6401: The attributes of this name conflict with those made accessible by a USE statement.   [MPI_ERR_FILE_EXISTS]
       INTEGER MPI_ERR_FILE_EXISTS
---------------^
/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpif.h(42): error #6401: The attributes of this name conflict with those made accessible by a USE statement.   [MPI_ERR_PENDING]
       INTEGER MPI_ERR_PENDING
---------------^
/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpif.h(44): error #6401: The attributes of this name conflict with those made accessible by a USE statement.   [MPI_ERR_COMM]
       INTEGER MPI_ERR_COMM
---------------^
/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpif.h(46): error #6401: The attributes of this name conflict with those made accessible by a USE statement.   [MPI_ERR_KEYVAL]
       INTEGER MPI_ERR_KEYVAL
---------------^
/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpif.h(48): error #6401: The attributes of this name conflict with those made accessible by a USE statement.   [MPI_ERR_NAME]
       INTEGER MPI_ERR_NAME
---------------^
/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpif.h(50): error #6401: The attributes of this name conflict with those made accessible by a USE statement.   [MPI_ERR_REQUEST]
       INTEGER MPI_ERR_REQUEST
---------------^
/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpif.h(52): error #6401: The attributes of this name conflict with those made accessible by a USE statement.   [MPI_ERR_TYPE]
       INTEGER MPI_ERR_TYPE
---------------^
/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpif.h(54): error #6401: The attributes of this name conflict with those made accessible by a USE statement.   [MPI_ERR_INFO_VALUE]
       INTEGER MPI_ERR_INFO_VALUE
---------------^
/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpif.h(56): error #6401: The attributes of this name conflict with those made accessible by a USE statement.   [MPI_ERR_RMA_SYNC]
       INTEGER MPI_ERR_RMA_SYNC
---------------^
/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpif.h(58): error #6401: The attributes of this name conflict with those made accessible by a USE statement.   [MPI_ERR_NO_MEM]
       INTEGER MPI_ERR_NO_MEM
---------------^
particles_global.f90(655): catastrophic error: Too many errors, exiting
compilation aborted for particles_global.f90 (code 1)
make[2]: *** [particles_global.o] Error 1
make[2]: Leaving directory `/glade/u/home/lisingh/hippstr2.0/src/particles'
make[2]: Entering directory `/glade/u/home/lisingh/hippstr2.0/src/io'
make[2]: `/glade/u/home/lisingh/hippstr2.0/lib/libio.a' is up to date.
make[2]: Leaving directory `/glade/u/home/lisingh/hippstr2.0/src/io'
make[2]: Entering directory `/glade/u/home/lisingh/hippstr2.0/src/monitor'
make[2]: `/glade/u/home/lisingh/hippstr2.0/lib/libmonitor.a' is up to date.
make[2]: Leaving directory `/glade/u/home/lisingh/hippstr2.0/src/monitor'
make[2]: Entering directory `/glade/u/home/lisingh/hippstr2.0/src/core'
make[2]: `/glade/u/home/lisingh/hippstr2.0/lib/libcore.a' is up to date.
make[2]: Leaving directory `/glade/u/home/lisingh/hippstr2.0/src/core'
make[1]: Leaving directory `/glade/u/home/lisingh/hippstr2.0/src'
make[1]: Entering directory `/glade/u/home/lisingh/hippstr2.0/src'
mpif90     /glade/u/home/lisingh/hippstr2.0/obj/driver.o /glade/u/home/lisingh/hippstr2.0/lib/libcore.a /glade/u/home/lisingh/hippstr2.0/lib/libmonitor.a /glade/u/home/lisingh/hippstr2.0/lib/libio.a /glade/u/home/lisingh/hippstr2.0/lib/libparticles.a /glade/u/home/lisingh/hippstr2.0/lib/libfluid.a /glade/u/home/lisingh/hippstr2.0/lib/libconfig.a /glade/u/home/lisingh/hippstr2.0/lib/libp3dfft.a /glade/u/home/lisingh/hippstr2.0/lib/liblibrary.a -o /glade/u/home/lisingh/hippstr2.0/bin/hippstr 
ld: warning: libhdf5_hl.so.7, needed by /glade/apps/opt/netcdf/4.2/intel/default/lib/libnetcdf_c++4.so.1, may conflict with libhdf5_hl.so.8
ld: warning: libhdf5.so.7, needed by /glade/apps/opt/netcdf/4.2/intel/default/lib/libnetcdf_c++4.so.1, may conflict with libhdf5.so.8
ld: warning: libhdf5_fortran.so.7, needed by /glade/apps/opt/netcdf/4.2/intel/default/lib/libnetcdf.so.7, may conflict with libhdf5_fortran.so.8
ld: warning: libhdf5hl_fortran.so.7, needed by /glade/apps/opt/netcdf/4.2/intel/default/lib/libnetcdf.so.7, may conflict with libhdf5hl_fortran.so.8
ld: warning: libhdf5_cpp.so.7, needed by /glade/apps/opt/netcdf/4.2/intel/default/lib/libnetcdf.so.7, may conflict with libhdf5_cpp.so.8
ld: warning: libhdf5_hl_cpp.so.7, needed by /glade/apps/opt/netcdf/4.2/intel/default/lib/libnetcdf.so.7, may conflict with libhdf5_hl_cpp.so.8
/glade/u/home/lisingh/hippstr2.0/lib/libcore.a(simulation.o): In function `simulation_mp_simulation_run_':
simulation.f90:(.text+0x139): undefined reference to `particles_neighborlist_'
make[1]: *** [hippstr] Error 1
make[1]: Leaving directory `/glade/u/home/lisingh/hippstr2.0/src'
make: *** [default] Error 2

Would it be easier to send you the two modules that I think are conflicting? Thank you so much

> On Sep 23, 2016, at 10:59 AM, Matthew Knepley <knepley at gmail.com> wrote:
> 
> On Fri, Sep 23, 2016 at 9:53 AM, Melanie Li Sing How <ml2448 at cornell.edu <mailto:ml2448 at cornell.edu>> wrote:
> Hi,
> I happened to fall on your link (http://lists.mcs.anl.gov/pipermail/petsc-users/2010-April/006170.html <http://lists.mcs.anl.gov/pipermail/petsc-users/2010-April/006170.html>) to the same problem I am having. I am a yellowstone user and I could not find a contact detail for the same error I am having:
> 
> /error #6401: The attributes of this name conflict with those made accessible by a USE statement.   [MPI_TAG]
>        INTEGER MPI_SOURCE, MPI_TAG, MPI_ERROR
> 
> Could you please provide some advice on this?
> 
> As Satish says, show us what you are doing, or at least the whole error message.
> 
>    Matt
>  
> Thank you
> 
> 
> 
> 
> -- 
> What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead.
> -- Norbert Wiener

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