[petsc-users] HDF5 and PETSc

[Matthew Knepley]

On Mon, Jul 11, 2016 at 3:13 AM, Marco Zocca <zocca.marco at gmail.com> wrote:

> Sorry for the previous mail, I hadn't fully read  ./configure --help :
> all external package options are listed there, including HDF5
>
> As far as I can see in
> https://www.mcs.anl.gov/petsc/miscellaneous/external.html and on the
> PDF manual, not all external packages are mentioned, and this tripped
> me initially.
>
> So my question becomes: please synchronize the output of ./configure
> --help with manpages and pdf manual :)
>

Done.

https://bitbucket.org/petsc/petsc/commits/b6541ed63645a657daaf31a0efc9fb29a825bfaf

   Matt


> Thanks again,
> Marco
>
>
> On 11 July 2016 at 09:57, Marco Zocca <zocca.marco at gmail.com> wrote:
> > Good morning,
> >
> >    Does the HDF5 functionality need to be explicitly requested at
> > configure time? I just noticed that my default configuration on a
> > single-node machine does not compile any relevant symbol.
> >
> > I do not have HDF5 installed on my system yet, but I assumed PETSc
> > includes it by default, or automagically pulls the dependency in at
> > config time, since the manual doesn't mention anything about it. Do I
> > have to install HDF5 from source and rebuild PETSc then?
> >
> > Thanks in advance,
> > Marco
> >
> >
> >
> > --- config options and architecture :
> >
> > Configure Options: --configModules=PETSc.Configure
> > --optionsModule=config.compilerOptions --with-cc=gcc --with-cxx=g++
> > --with-fc=gfortran --download-fblaslapack --download-mpich
> > Working directory: /Users/ocramz/petsc-3.7.2
> > Machine platform:
> > ('Darwin', 'fermi.local', '13.4.0', 'Darwin Kernel Version 13.4.0: Sun
> > Aug 17 19:50:11 PDT 2014; root:xnu-2422.115.4~1/RELEASE_X86_64',
> > 'x86_64', 'i386')
> > Python version:
> > 2.7.5 (default, Mar  9 2014, 22:15:05)
> > [GCC 4.2.1 Compatible Apple LLVM 5.0 (clang-500.0.68)]
>



-- 
What most experimenters take for granted before they begin their
experiments is infinitely more interesting than any results to which their
experiments lead.
-- Norbert Wiener
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.mcs.anl.gov/pipermail/petsc-users/attachments/20160711/50f37faa/attachment.html>