[petsc-users] osx configuration error

[Mark Adams]

Thanks Satish, this worked.

On Wed, Jan 13, 2016 at 9:49 AM, Satish Balay <balay at mcs.anl.gov> wrote:

> >>>>>>>>
> Executing: mpif90  -o
> /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-2z06LS/config.setCompilers/conftest
>
> /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-2z06LS/config.setCompilers/conftest.o
> Testing executable
> /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-2z06LS/config.setCompilers/conftest
> to see if it can be run
> Executing:
> /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-2z06LS/config.setCompilers/conftest
> Executing:
> /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-2z06LS/config.setCompilers/conftest
> ERROR while running executable: Could not execute
> "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-2z06LS/config.setCompilers/conftest":
> dyld: Library not loaded:
> /Users/markadams/homebrew/lib/gcc/x86_64-apple-darwin13.4.0/4.9.1/libgfortran.3.dylib
>   Referenced from: /Users/markadams/homebrew/lib/libmpifort.12.dylib
>   Reason: image not found
> <<<<<<<<<<<
>
> Mostlikely you haven't reinstalled mpich - as its refering to
> gfortran-4.9.1. Current gfortran is 5.3
> GNU Fortran (Homebrew gcc 5.3.0) 5.3.0
>
>
> This is what I would do to reinstall brew
>
> 1. Make list of pkgs to reinstall
>
> brew leaves > reinstall.lst
>
> 2. delete all installed brew pacakges.
>
> brew cleanup
> brew list > delete.lst
> brew remove `cat delete.lst
>
> 3. Now reinstall all required packages
> brew update
> brew install `cat reinstall.lst`
>
>
> Satish
>
>
> On Wed, 13 Jan 2016, Mark Adams wrote:
>
> > I'm still having problems.  I have upgraded gcc and mpich. I am now
> > upgrading everything from homebrew.  Any ideas on this error?
> > thanks,
> >
> > On Wed, Jan 13, 2016 at 2:15 AM, Matthew Knepley <knepley at gmail.com>
> wrote:
> >
> > > On Tue, Jan 12, 2016 at 6:31 PM, Satish Balay <balay at mcs.anl.gov>
> wrote:
> > >
> > >> > 'file' object has no attribute 'getvalue'  File
> > >> "/Users/markadams/Codes/petsc/config/configure.py", line 363, in
> > >> petsc_configure
> > >>
> > >> Hm - have to figure this one out - but the primary issue is:
> > >>
> > >> > stderr:
> > >> > gfortran: warning: couldn't understand kern.osversion '15.2.0
> > >> > ld: -rpath can only be used when targeting Mac OS X 10.5 or later
> > >>
> > >
> > > I get this. The remedy I use is to put
> > >
> > >   MACOSX_DEPLOYMENT_TARGET=10.5
> > >
> > > in the environment. Its annoying, and quintessentially Mac.
> > >
> > >   Matt
> > >
> > >
> > >> Perhaps you've updated xcode or OSX - but did not reinstall
> brew/gfortran.
> > >>
> > >> > Executing: mpif90 --version
> > >> > stdout:
> > >> > GNU Fortran (Homebrew gcc 4.9.1) 4.9.1
> > >>
> > >> I suggest uninstalling/reinstalling homebrew packages.
> > >>
> > >> Satish
> > >>
> > >>
> > >>
> > >> On Tue, 12 Jan 2016, Mark Adams wrote:
> > >>
> > >> > I did nuke the arch directory.  This has worked in the past and
> don't
> > >> know
> > >> > what I might have changed.  it's been awhile since I've
> reconfigured.
> > >> > Thanks,
> > >> > Mark
> > >> >
> > >>
> > >>
> > >
> > >
> > > --
> > > What most experimenters take for granted before they begin their
> > > experiments is infinitely more interesting than any results to which
> their
> > > experiments lead.
> > > -- Norbert Wiener
> > >
> >
>
>
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