[petsc-users] Hypre 2.10 lapack undefined symbols (OS-X)

[Denis Davydov]

Dear all, 

I have Lapack-related undefined symbols errors when trying to run tests on Hypre, configured and compiled by PETSc
(./configure --download-superlu_dist --download-metis --download-parmetis --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-debugging=0 --download-hypre).
Any ideas what’s happening?

During the build also some "has no symbols” shows up, which does not look good either. There are no compiler errors though...


Regards,
Denis.

p.s. Hypre configure resulting from PETSc is:
./configure --prefix=/Users/davydden/Downloads/petsc-3.6.0/arch-darwin-c-opt MAKE=/usr/bin/make --libdir=/Users/davydden/Downloads/petsc-3.6.0/arch-darwin-c-opt/lib CC=mpicc CFLAGS=-fPIC -O CXX=mpicxx CXXFLAGS=-O -fPIC F90=mpif90 F90FLAGS=-fPIC -ffree-line-length-0 -O F77=mpif90 FFLAGS=-fPIC -ffree-line-length-0 -O FC=mpif90 FCFLAGS=-fPIC -ffree-line-length-0 -O --with-MPI-include=/usr/local/Cellar/open-mpi/1.8.6/include --with-MPI-lib-dirs= --with-MPI-libs= --with-blas-libs= --with-blas-lib-dir= --with-lapack-libs= --with-lapack-lib-dir= --with-blas=yes --with-lapack=yes --with-fmangle-blas=one-underscore --with-fmangle-lapack=one-underscore --without-babel --without-mli --without-fei --without-superlu AR=/usr/bin/ar cr


=== check ===
$ make check
Checking the library ...
mpicc -fPIC -O -DHAVE_CONFIG_H -I. -I./.. -I/Users/davydden/Downloads/petsc-3.6.0/arch-darwin-c-opt/externalpackages/hypre-2.10.0b-p1/src/hypre/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DHYPRE_TIMING -DHYPRE_FORTRAN -c ij.c
Building ij ...
mpicc -o ij ij.o -L/Users/davydden/Downloads/petsc-3.6.0/arch-darwin-c-opt/externalpackages/hypre-2.10.0b-p1/src/hypre/lib -lHYPRE          -lm
Undefined symbols for architecture x86_64:
  "_dgels_", referenced from:
      _ComputeValuesNonsym in libHYPRE.a(ParaSails.o)
      _hypre_BoomerAMGFitVectors in libHYPRE.a(par_gsmg.o)
  "_dgetrf_", referenced from:
      _hypre_BoomerAMGRelax in libHYPRE.a(par_relax.o)
      _hypre_GaussElimSolve in libHYPRE.a(par_relax.o)
      _hypre_AMGCreateDomainDof in libHYPRE.a(schwarz.o)
      _hypre_ParAMGCreateDomainDof in libHYPRE.a(schwarz.o)
  "_dgetrs_", referenced from:
      _hypre_BoomerAMGRelax in libHYPRE.a(par_relax.o)
      _hypre_GaussElimSolve in libHYPRE.a(par_relax.o)
      _hypre_ParMPSchwarzSolve in libHYPRE.a(schwarz.o)
      _hypre_MPSchwarzSolve in libHYPRE.a(schwarz.o)
      _hypre_MPSchwarzCFSolve in libHYPRE.a(schwarz.o)
      _hypre_MPSchwarzFWSolve in libHYPRE.a(schwarz.o)
      _hypre_MPSchwarzCFFWSolve in libHYPRE.a(schwarz.o)
      ...
  "_dpotrf_", referenced from:
      _dpotrf_interface in libHYPRE.a(HYPRE_lobpcg.o)
      _ComputeValuesSym in libHYPRE.a(ParaSails.o)
      _hypre_AMGNodalSchwarzSmoother in libHYPRE.a(schwarz.o)
      _hypre_AMGCreateDomainDof in libHYPRE.a(schwarz.o)
      _hypre_ParAMGCreateDomainDof in libHYPRE.a(schwarz.o)
  "_dpotrs_", referenced from:
      _ComputeValuesSym in libHYPRE.a(ParaSails.o)
      _hypre_ParMPSchwarzSolve in libHYPRE.a(schwarz.o)
      _hypre_MPSchwarzSolve in libHYPRE.a(schwarz.o)
      _hypre_MPSchwarzCFSolve in libHYPRE.a(schwarz.o)
      _hypre_MPSchwarzFWSolve in libHYPRE.a(schwarz.o)
      _hypre_MPSchwarzCFFWSolve in libHYPRE.a(schwarz.o)
      _hypre_AdSchwarzSolve in libHYPRE.a(schwarz.o)
      ...
  "_dsygv_", referenced from:
      _dsygv_interface in libHYPRE.a(HYPRE_lobpcg.o)


=== has no symbols: ===

/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libHYPRE_utilities.a(hypre_complex.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libHYPRE_utilities.a(hypre_mpi_comm_f2c.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libHYPRE_utilities.a(threading.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libHYPRE_utilities.a(hypre_complex.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libHYPRE_utilities.a(hypre_mpi_comm_f2c.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libHYPRE_utilities.a(threading.o) has no symbols

/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libHYPRE_MatrixMatrix.a(HYPRE_ConvertPETScMatrixToDistributedMatrix.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libHYPRE_MatrixMatrix.a(HYPRE_ConvertPETScMatrixToDistributedMatrix.o) has no symbols

/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libHYPRE.a(HYPRE_ConvertPETScMatrixToDistributedMatrix.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libHYPRE.a(HYPRE_ConvertPETScMatrixToDistributedMatrix.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libHYPRE.a(HYPRE_ConvertPETScMatrixToDistributedMatrix.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libHYPRE.a(HYPRE_ConvertPETScMatrixToDistributedMatrix.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libHYPRE.a(HYPRE_ConvertPETScMatrixToDistributedMatrix.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libHYPRE.a(HYPRE_ConvertPETScMatrixToDistributedMatrix.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libHYPRE.a(HYPRE_ConvertPETScMatrixToDistributedMatrix.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libHYPRE.a(HYPRE_ConvertPETScMatrixToDistributedMatrix.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libHYPRE.a(HYPRE_ConvertPETScMatrixToDistributedMatrix.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libHYPRE.a(HYPRE_ConvertPETScMatrixToDistributedMatrix.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libHYPRE.a(HYPRE_ConvertPETScMatrixToDistributedMatrix.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libHYPRE.a(hypre_complex.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libHYPRE.a(hypre_mpi_comm_f2c.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libHYPRE.a(threading.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libHYPRE.a(HYPRE_ConvertPETScMatrixToDistributedMatrix.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libHYPRE.a(hypre_complex.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libHYPRE.a(hypre_mpi_comm_f2c.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libHYPRE.a(threading.o) has no symbols