[petsc-users] Error running DMPlex example

[Gautam Bisht]

Hi,

I'm getting the following error while running the following DMPlex example.
Any suggestion what is going wrong? Attached are example.log and
configure.log.


python2.7 ./config/builder2.py check src/snes/examples/tutorials/ex12.c
Namespace(args=[], files=['src/snes/examples/tutorials/ex12.c'],
func=<function check at 0x10d874c80>, numProcs=None, regParams=None,
replace=False, retain=False, testnum=None)
Running 52 tests
Building
['/Users/gbisht/projects/petsc/petsc_f0284fa/src/snes/examples/tutorials/ex12.c']
Running #0: /opt/local/bin/mpiexec-mpich-gcc49 -host localhost -n 1
darwin-gnu-fort-debug/lib/ex12-obj/ex12 -run_type test -refinement_limit
0.0    -bc_type dirichlet -interpolate 0 -petscspace_order 1 -s
TEST ERROR: Failed to execute darwin-gnu-fort-debug/lib/ex12-obj/ex12
===================================================================================


=   BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES


=   PID 69451 RUNNING AT localhost


=   EXIT CODE: 59


=   CLEANING UP REMAINING PROCESSES


=   YOU CAN IGNORE THE BELOW CLEANUP MESSAGES


===================================================================================
[0]PETSC ERROR:
------------------------------------------------------------------------

[0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,
probably memory access out of range

[0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger


[0]PETSC ERROR: or see
http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind


[0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X
to find memory corruption errors

[0]PETSC ERROR: likely location of problem given in stack below


[0]PETSC ERROR: ---------------------  Stack Frames
------------------------------------


[0]PETSC ERROR: Note: The EXACT line numbers in the stack are not
available,

[0]PETSC ERROR:       INSTEAD the line number of the start of the function


[0]PETSC ERROR:       is given.


[0]PETSC ERROR: [0] DMPlexGenerate_Triangle line 217
src/dm/impls/plex/plexgenerate.c

[0]PETSC ERROR: [0] DMPlexGenerate line 1056
src/dm/impls/plex/plexgenerate.c


[0]PETSC ERROR: [0] DMPlexCreateBoxMesh line 897
src/dm/impls/plex/plexcreate.c


[0]PETSC ERROR: [0] CreateMesh line 347 src/snes/examples/tutorials/ex12.c


[0]PETSC ERROR: --------------------- Error Message
--------------------------------------------------------------


[0]PETSC ERROR: Signal received


[0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for
trouble shooting.

[0]PETSC ERROR: Petsc Development GIT revision: v3.6.1-238-gf0284fa  GIT
Date: 2015-07-27 13:34:26 -0500

[0]PETSC ERROR: darwin-gnu-fort-debug/lib/ex12-obj/ex12 on a
darwin-gnu-fort-debug named gautam-laptop by gbisht Tue Aug  4 21:09:37
2015
[0]PETSC ERROR: Configure options --download-hdf5=1
--with-blas-lapack-lib=/System/Library/Frameworks/Accelerate.framework/Versions/Current/Accelerate
--download-parmetis=yes --download-metis=yes --with-c
[0]PETSC ERROR: #1 User provided function() line 0 in  unknown file


application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0





TEST RUN FAILED (check example.log for details)


-Gautam.
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