Loaded configure to cache: size 329427 Running 52 tests Building ['/Users/gbisht/projects/petsc/petsc_f0284fa/src/snes/examples/tutorials/ex12.c'] Compiling C files ['/Users/gbisht/projects/petsc/petsc_f0284fa/src/snes/examples/tutorials/ex12.c'] /opt/local/bin/mpicc-mpich-gcc49 -c -I/Users/gbisht/projects/petsc/petsc_f0284fa/darwin-gnu-fort-debug/include -I/Users/gbisht/projects/petsc/petsc_f0284fa/include -I/Users/gbisht/projects/petsc/petsc_f0284fa/darwin-gnu-fort-debug/include -I/opt/X11/include -I/opt/local/include/mpich-gcc49 -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 -MMD -MP /Users/gbisht/projects/petsc/petsc_f0284fa/src/snes/examples/tutorials/ex12.c Executing: /opt/local/bin/mpicc-mpich-gcc49 -c -I/Users/gbisht/projects/petsc/petsc_f0284fa/darwin-gnu-fort-debug/include -I/Users/gbisht/projects/petsc/petsc_f0284fa/include -I/Users/gbisht/projects/petsc/petsc_f0284fa/darwin-gnu-fort-debug/include -I/opt/X11/include -I/opt/local/include/mpich-gcc49 -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 -MMD -MP /Users/gbisht/projects/petsc/petsc_f0284fa/src/snes/examples/tutorials/ex12.c Moving ex12.o to /Users/gbisht/projects/petsc/petsc_f0284fa/darwin-gnu-fort-debug/lib/ex12-obj/ex12.o Moving ex12.d to /Users/gbisht/projects/petsc/petsc_f0284fa/darwin-gnu-fort-debug/lib/ex12-obj/ex12.d Linking object ['/Users/gbisht/projects/petsc/petsc_f0284fa/darwin-gnu-fort-debug/lib/ex12-obj/ex12.o'] into /Users/gbisht/projects/petsc/petsc_f0284fa/darwin-gnu-fort-debug/lib/ex12-obj/ex12 Pushing language C Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C Executing: /opt/local/bin/mpicc-mpich-gcc49 -o /Users/gbisht/projects/petsc/petsc_f0284fa/darwin-gnu-fort-debug/lib/ex12-obj/ex12 -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /Users/gbisht/projects/petsc/petsc_f0284fa/darwin-gnu-fort-debug/lib/ex12-obj/ex12.o -L/Users/gbisht/projects/petsc/petsc_f0284fa/darwin-gnu-fort-debug/lib -lpetsc /System/Library/Frameworks/Accelerate.framework/Versions/Current/Accelerate -Wl,-rpath,/Users/gbisht/projects/petsc/petsc_f0284fa/darwin-gnu-fort-debug/lib -L/Users/gbisht/projects/petsc/petsc_f0284fa/darwin-gnu-fort-debug/lib -lparmetis -lmetis -ltriangle -Wl,-rpath,/opt/X11/lib -L/opt/X11/lib -lX11 -lchaco -lhdf5hl_fortran -lhdf5_fortran -lhdf5_hl -lhdf5 -lctetgen -lssl -lcrypto -L/usr/local/cuda/lib -Wl,-rpath,/opt/local/lib/mpich-gcc49 -L/opt/local/lib/mpich-gcc49 -Wl,-rpath,/opt/local/lib/gcc49/gcc/x86_64-apple-darwin14/4.9.3 -L/opt/local/lib/gcc49/gcc/x86_64-apple-darwin14/4.9.3 -Wl,-rpath,/opt/local/lib/gcc49 -L/opt/local/lib/gcc49 -lmpi -lpmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/opt/local/lib/mpich-gcc49 -L/opt/local/lib/mpich-gcc49 -Wl,-rpath,/opt/local/lib/gcc49/gcc/x86_64-apple-darwin14/4.9.3 -L/opt/local/lib/gcc49/gcc/x86_64-apple-darwin14/4.9.3 -Wl,-rpath,/opt/local/lib/gcc49 -L/opt/local/lib/gcc49 -ldl Executing: /usr/bin/dsymutil /Users/gbisht/projects/petsc/petsc_f0284fa/darwin-gnu-fort-debug/lib/ex12-obj/ex12 Popping language C Running #0: /opt/local/bin/mpiexec-mpich-gcc49 -host localhost -n 1 darwin-gnu-fort-debug/lib/ex12-obj/ex12 -run_type test -refinement_limit 0.0 -bc_type dirichlet -interpolate 0 -petscspace_order 1 -show_initial -dm_plex_print_fem 1 Executing: /opt/local/bin/mpiexec-mpich-gcc49 -host localhost -n 1 /Users/gbisht/projects/petsc/petsc_f0284fa/darwin-gnu-fort-debug/lib/ex12-obj/ex12 -run_type test -refinement_limit 0.0 -bc_type dirichlet -interpolate 0 -petscspace_order 1 -show_initial -dm_plex_print_fem 1 stdout: =================================================================================== = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES = PID 69451 RUNNING AT localhost = EXIT CODE: 59 = CLEANING UP REMAINING PROCESSES = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES =================================================================================== TEST ERROR: Failed to execute darwin-gnu-fort-debug/lib/ex12-obj/ex12 =================================================================================== = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES = PID 69451 RUNNING AT localhost = EXIT CODE: 59 = CLEANING UP REMAINING PROCESSES = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES ===================================================================================[0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [0]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [0]PETSC ERROR: likely location of problem given in stack below [0]PETSC ERROR: --------------------- Stack Frames ------------------------------------ [0]PETSC ERROR: Note: The EXACT line numbers in the stack are not available, [0]PETSC ERROR: INSTEAD the line number of the start of the function [0]PETSC ERROR: is given. [0]PETSC ERROR: [0] DMPlexGenerate_Triangle line 217 src/dm/impls/plex/plexgenerate.c [0]PETSC ERROR: [0] DMPlexGenerate line 1056 src/dm/impls/plex/plexgenerate.c [0]PETSC ERROR: [0] DMPlexCreateBoxMesh line 897 src/dm/impls/plex/plexcreate.c [0]PETSC ERROR: [0] CreateMesh line 347 src/snes/examples/tutorials/ex12.c [0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [0]PETSC ERROR: Signal received [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [0]PETSC ERROR: Petsc Development GIT revision: v3.6.1-238-gf0284fa GIT Date: 2015-07-27 13:34:26 -0500 [0]PETSC ERROR: darwin-gnu-fort-debug/lib/ex12-obj/ex12 on a darwin-gnu-fort-debug named gautam-laptop by gbisht Tue Aug 4 21:09:37 2015 [0]PETSC ERROR: Configure options --download-hdf5=1 --with-blas-lapack-lib=/System/Library/Frameworks/Accelerate.framework/Versions/Current/Accelerate --download-parmetis=yes --download-metis=yes --with-cc=/opt/local/bin/mpicc-mpich-gcc49 --with-cxx=/opt/local/bin/mpicxx-mpich-gcc49 --with-fc=/opt/local/bin/mpif90-mpich-gcc49 --with-mpiexec=/opt/local/bin/mpiexec-mpich-gcc49 PETSC_ARCH=darwin-gnu-fort-debug --download-sowing=1 --download-triangle=1 --download-ctetgen=1 --download-chaco=1 [0]PETSC ERROR: #1 User provided function() line 0 in unknown file application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0