[petsc-users] Error configuring with Ctetgen

[Justin Chang]

Barry, I am not sure if this is what you're asking for (I am not too
familiar with gdb) but here's what happened after following your
instructions:

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Reading symbols from ./ex1...
warning: `/Users/jychang48/petsc-dev/src/vec/vec/examples/tutorials/ex1.o':
can't open to read symbols: No such file or directory.
(no debugging symbols found)...done.
(gdb) run
Starting program:
/Users/jychang48/petsc-dev/src/vec/vec/examples/tutorials/ex1
Unable to find Mach task port for process-id 57136: (os/kern) failure (0x5).
 (please check gdb is codesigned - see taskgated(8))
(gdb) bt carriage
No stack.
(gdb)


On Mon, Oct 20, 2014 at 10:50 PM, Barry Smith <bsmith at mcs.anl.gov> wrote:

>
>
>    cd src/vec/vec/examples/tutorials
>    make ex1
>    gdb ./ex1
>    run
>
>     if it stops type bt carriage return and send all the output
>
>
> > On Oct 20, 2014, at 10:37 PM, Justin Chang <jychang48 at gmail.com> wrote:
> >
> > I did rm-rf arch-darwin-c-debug and ran config with the following
> options:
> >
> > ./configure --download-exodusii --download-hdf5 --download-metis
> --download-mpich --download-mumps --download-netcdf --download-parmetis
> --download-scalapack --download-triangle --with-cc=gcc --with-cxx=g++
> --with-debugging=1 --with-fc=gfortran --with-valgrind=1 -with-cmake=cmake
> --download-ctetgen
> >
> > And it compiles. However, once I run make all test I get the error
> "Attempting to use an MPI routine before initializing MPICH" when it
> attempts to run the test examples. Now I can't run any PETSc code
> whatsoever. Attached are the new make and configure log files.
> >
> > Thanks,
> > Justin
> >
> > On Mon, Oct 20, 2014 at 9:57 PM, Satish Balay <balay at mcs.anl.gov> wrote:
> > Try:
> >
> > rm -rf arch-darwin-c-debug
> > and rerun onfigure
> >
> > [basically you have old version of ctetgen - and configure does not
> > have smarts to detect this or update to the appropriate version
> > automatically.  And its likely you have old versions of other packages
> > aswell - so its best to do a clean build]
> >
> > BTW - you shouldn't need --download-fblaslapack on OSX [as it provides
> > -llapack -lblas via vecLib]
> >
> > Satish
> >
> > On Mon, 20 Oct 2014, Justin Chang wrote:
> >
> > > Hi all,
> > >
> > > On my MacOSx I am trying to install the developer's version of petsc
> with
> > > the following options:
> > >
> > > ./configure --download-exodusii --download-fblaslapack --download-hdf5
> > > --download-metis --download-mpich --download-mumps --download-netcdf
> > > --download-parmetis --download-scalapack --download-triangle
> --with-cc=gcc
> > > --with-cxx=g++ --with-debugging=1 --with-fc=gfortran --with-valgrind=1
> > > -with-cmake=cmake --download-ctetgen
> > >
> > > The error I get is with the --download-ctetgen option
> > >
> > >
> *******************************************************************************
> > >          UNABLE to CONFIGURE with GIVEN OPTIONS    (see configure.log
> for
> > > details):
> > >
> -------------------------------------------------------------------------------
> > > Error running make on Ctetgen: Could not execute "cd
> > >
> /Users/jychang48/petsc-dev/arch-darwin-c-debug/externalpackages/ctetgen &&
> > > /usr/bin/make PETSC_DIR=/Users/jychang48/petsc-dev install-ctetgen":
> > > make: *** No rule to make target `install-ctetgen'.  Stop.
> > >
> *******************************************************************************
> > >
> > > Do you guys know what is wrong? Attached are the make and log files.
> > >
> > > Thanks,
> > > Justin
> > >
> >
> >
> > <configure.log><make.log>
>
>
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