<div dir="ltr">Barry, I am not sure if this is what you're asking for (I am not too familiar with gdb) but here's what happened after following your instructions:<br><br>GNU gdb (GDB) 7.8<br>Copyright (C) 2014 Free Software Foundation, Inc.<br>License GPLv3+: GNU GPL version 3 or later <<a href="http://gnu.org/licenses/gpl.html">http://gnu.org/licenses/gpl.html</a>><br>This is free software: you are free to change and redistribute it.<br>There is NO WARRANTY, to the extent permitted by law. Type "show copying"<br>and "show warranty" for details.<br>This GDB was configured as "x86_64-apple-darwin13.4.0".<br>Type "show configuration" for configuration details.<br>For bug reporting instructions, please see:<br><<a href="http://www.gnu.org/software/gdb/bugs/">http://www.gnu.org/software/gdb/bugs/</a>>.<br>Find the GDB manual and other documentation resources online at:<br><<a href="http://www.gnu.org/software/gdb/documentation/">http://www.gnu.org/software/gdb/documentation/</a>>.<br>For help, type "help".<br>Type "apropos word" to search for commands related to "word"...<br>Reading symbols from ./ex1...<br>warning: `/Users/jychang48/petsc-dev/src/vec/vec/examples/tutorials/ex1.o': can't open to read symbols: No such file or directory.<br>(no debugging symbols found)...done.<br>(gdb) run<br>Starting program: /Users/jychang48/petsc-dev/src/vec/vec/examples/tutorials/ex1 <br>Unable to find Mach task port for process-id 57136: (os/kern) failure (0x5).<br> (please check gdb is codesigned - see taskgated(8))<br>(gdb) bt carriage<br>No stack.<br>(gdb) <br><br></div><div class="gmail_extra"><br><div class="gmail_quote">On Mon, Oct 20, 2014 at 10:50 PM, Barry Smith <span dir="ltr"><<a href="mailto:bsmith@mcs.anl.gov" target="_blank">bsmith@mcs.anl.gov</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><br>
<br>
cd src/vec/vec/examples/tutorials<br>
make ex1<br>
gdb ./ex1<br>
run<br>
<br>
if it stops type bt carriage return and send all the output<br>
<div><div class="h5"><br>
<br>
> On Oct 20, 2014, at 10:37 PM, Justin Chang <<a href="mailto:jychang48@gmail.com">jychang48@gmail.com</a>> wrote:<br>
><br>
> I did rm-rf arch-darwin-c-debug and ran config with the following options:<br>
><br>
> ./configure --download-exodusii --download-hdf5 --download-metis --download-mpich --download-mumps --download-netcdf --download-parmetis --download-scalapack --download-triangle --with-cc=gcc --with-cxx=g++ --with-debugging=1 --with-fc=gfortran --with-valgrind=1 -with-cmake=cmake --download-ctetgen<br>
><br>
> And it compiles. However, once I run make all test I get the error "Attempting to use an MPI routine before initializing MPICH" when it attempts to run the test examples. Now I can't run any PETSc code whatsoever. Attached are the new make and configure log files.<br>
><br>
> Thanks,<br>
> Justin<br>
><br>
> On Mon, Oct 20, 2014 at 9:57 PM, Satish Balay <<a href="mailto:balay@mcs.anl.gov">balay@mcs.anl.gov</a>> wrote:<br>
> Try:<br>
><br>
> rm -rf arch-darwin-c-debug<br>
> and rerun onfigure<br>
><br>
> [basically you have old version of ctetgen - and configure does not<br>
> have smarts to detect this or update to the appropriate version<br>
> automatically. And its likely you have old versions of other packages<br>
> aswell - so its best to do a clean build]<br>
><br>
> BTW - you shouldn't need --download-fblaslapack on OSX [as it provides<br>
> -llapack -lblas via vecLib]<br>
><br>
> Satish<br>
><br>
> On Mon, 20 Oct 2014, Justin Chang wrote:<br>
><br>
> > Hi all,<br>
> ><br>
> > On my MacOSx I am trying to install the developer's version of petsc with<br>
> > the following options:<br>
> ><br>
> > ./configure --download-exodusii --download-fblaslapack --download-hdf5<br>
> > --download-metis --download-mpich --download-mumps --download-netcdf<br>
> > --download-parmetis --download-scalapack --download-triangle --with-cc=gcc<br>
> > --with-cxx=g++ --with-debugging=1 --with-fc=gfortran --with-valgrind=1<br>
> > -with-cmake=cmake --download-ctetgen<br>
> ><br>
> > The error I get is with the --download-ctetgen option<br>
> ><br>
> > *******************************************************************************<br>
> > UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for<br>
> > details):<br>
> > -------------------------------------------------------------------------------<br>
> > Error running make on Ctetgen: Could not execute "cd<br>
> > /Users/jychang48/petsc-dev/arch-darwin-c-debug/externalpackages/ctetgen &&<br>
> > /usr/bin/make PETSC_DIR=/Users/jychang48/petsc-dev install-ctetgen":<br>
> > make: *** No rule to make target `install-ctetgen'. Stop.<br>
> > *******************************************************************************<br>
> ><br>
> > Do you guys know what is wrong? Attached are the make and log files.<br>
> ><br>
> > Thanks,<br>
> > Justin<br>
> ><br>
><br>
><br>
</div></div>> <configure.log><make.log><br>
<br>
</blockquote></div><br></div>