[petsc-users] Building PETSc with Intel mpi

[Qin Lu]

I tried what you suggested and got the following error (configure .log attached):
**************
sh: 
ERROR while running executable: Could not execute "/tmp/petsc-cd5uJs/config.setCompilers/conftest":
/tmp/petsc-cd5uJs/config.setCompilers/conftest: error while loading shared libraries: /apps/compilers/intel_2013/impi/4.1.0.024/intel64/lib/libmpi.so.4: requires glibc 2.5 or later dynamic linker
******************
 
What can I do about this?
 
Thanks,
Qin
 

________________________________
 From: Barry Smith <bsmith at mcs.anl.gov>
To: Qin Lu <lu_qin_2000 at yahoo.com> 
Cc: petsc-users <petsc-users at mcs.anl.gov> 
Sent: Saturday, March 22, 2014 11:46 AM
Subject: Re: [petsc-users] Building PETSc with Intel mpi
  


On Mar 22, 2014, at 10:15 AM, Qin Lu <lu_qin_2000 at yahoo.com> wrote:

> The Intel mpi's wrappers to Intel compilers are mpiicc and mpiifort (not mpicc and mpif90), can PETSc's configure automatically pick them? Or I have to specify them explicitly (--with-cc=mpiicc --with-fc=mpiifort --with-mpi-compilers=0)?

  List 

   --with-cc=mpiicc --with-fc=mpiifort  

   do not list --with-mpi-compilers=0 or —with-mpi-dir or —with-mpi-libs

  Barry




> 
> Thanks,
> Qin
> 
> From: Satish Balay <balay at mcs.anl.gov>
> To: Qin Lu <lu_qin_2000 at yahoo.com> 
> Cc: Barry Smith <bsmith at mcs.anl.gov>; petsc-users <petsc-users at mcs.anl.gov> 
> Sent: Saturday, March 22, 2014 12:09 AM
> Subject: Re: [petsc-users] Building PETSc with Intel mpi
> 
> > --with-mpi-dir=/apps/compilers/intel_2013/impi/4.1.0.024/intel64 --with-mpi-compilers=0
> 
> Does this mpi not come with mpicc/mpif90 wrappers? If they do - its best to use them.
> 
> If not - its best to look at the docs for this compiler - and specify it with the appropriate
> 
> --with-mpi-include --with-mpi-lib options, [instead of the above]
> 
> Satish
> 
> On Fri, 21 Mar 2014, Qin Lu wrote:
> 
> > Sourcing the .csh files of the compiler fixed the problem. Thanks! However, later it got another error (see the attached configure.log for details):
> >  
> > *******************************************************************************
> >          UNABLE to CONFIGURE with GIVEN OPTIONS    (see configure.log for details):
> > -------------------------------------------------------------------------------
> > Fortran error! mpi_init() could not be located!
> > *******************************************************************************
> > 
> > It seems the configure did not link the Intel MPI libs. I used --with-mpi-dir to specify the MPI directory, can configure get the correct Intel MPI lib names? If I have to specify the lib names (using --with-mpi-lib?), which libs should I specify? I saw a lot of libs under the directory, such as libmpi.a, libmpi_ipl64.a, libmpi_mt.a, etc. 
> >  
> > Thanks a lot,
> > Qin
> >  
> > 
> > ________________________________
> >  From: Barry Smith <bsmith at mcs.anl.gov>
> > To: Qin Lu <lu_qin_2000 at yahoo.com> 
> > Cc: petsc-users <petsc-users at mcs.anl.gov> 
> > Sent: Friday, March 21, 2014 10:11 AM
> > Subject: Re: [petsc-users] Building PETSc with Intel mpi
> >  
> > 
> > 
> >   Did you follow the directions here: http://www.mcs.anl.gov/petsc/documentation/faq.html#libimf
> > 
> >   Did it make any difference?
> > 
> > 
> > On Mar 21, 2014, at 9:45 AM, Qin Lu <lu_qin_2000 at yahoo.com> wrote:
> > 
> > > Hello,
> > >  
> > > I was trying to build PETSc-3.4.2 with Intel MPI using Intel-2013 compilers in Linux, but got the error below. The configure.log is attached.
> > >  
> > > *******************************************************************************
> > >                     UNABLE to EXECUTE BINARIES for ./configure 
> > > -------------------------------------------------------------------------------
> > > Cannot run executables created with FC. If this machine uses a batch system 
> > > to submit jobs you will need to configure using ./configure with the additional option  --with-batch.
> > >  Otherwise there is problem with the compilers. Can you compile and run code with your C/C++ (and maybe Fortran) compilers?
> > > See http://www.mcs.anl.gov/petsc/documentation/faq.html#libimf
> > > *******************************************************************************
> > >  
> > > Thanks a lot for any suggestions abut the problem,
> > >  
> > > Regards,
> > > Qin
> > 
> > >  
> > > <configure.log>
> > 
> 
> 
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.mcs.anl.gov/pipermail/petsc-users/attachments/20140322/e8461b53/attachment-0001.html>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: configure.log
Type: application/octet-stream
Size: 179361 bytes
Desc: not available
URL: <http://lists.mcs.anl.gov/pipermail/petsc-users/attachments/20140322/e8461b53/attachment-0001.obj>