[petsc-users] with hdf5 dir

[Matthew Knepley]

On Wed, Dec 17, 2014 at 9:30 AM, paul zhang <paulhuaizhang at gmail.com> wrote:
>
> ​​
> Attached.
>

You HDF5 installation is incomplete. It is missing

  libhdf5_hl.a

  Thanks,

     Matt


> Thanks,
> Paul
>
> Huaibao (Paul) Zhang
> *Gas Surface Interactions Lab*
> Department of Mechanical Engineering
> University of Kentucky,
> Lexington,
> KY, 40506-0503
> *Office*: 216 Ralph G. Anderson Building
> *Web*:gsil.engineering.uky.edu
>
> On Wed, Dec 17, 2014 at 10:19 AM, Matthew Knepley <knepley at gmail.com>
> wrote:
>>
>> On Wed, Dec 17, 2014 at 8:58 AM, paul zhang <paulhuaizhang at gmail.com>
>> wrote:
>>>
>>> Hi All,
>>>
>>> I attempted to include hdf5 dir in my configuration, but failed.
>>>
>>> --with-hdf5-dir=$HDF5PATH
>>>
>>> I tried HDF5PATH=/share/cluster/SLES9/x86_64/apps/hdf5/1.8.3, but it
>>> shows
>>>
>>
>> When you get a failure like this, you have to send configure.log
>>
>>   Thanks,
>>
>>      Matt
>>
>>
>>>          UNABLE to CONFIGURE with GIVEN OPTIONS    (see configure.log
>>> for details):
>>>
>>> -------------------------------------------------------------------------------
>>> --with-hdf5-dir=/share/cluster/SLES9/x86_64/apps/hdf5/1.8.3 did not work
>>>
>>> *******************************************************************************
>>>
>>>
>>> As I run $module show hdf5, I got
>>>
>>> *-------------------------------------------------------------------*
>>> */usr/share/Modules/modulefiles/hdf5/1.8.3/icc/default:*
>>>
>>> *module-whatis load HDF5 environment *
>>> *prepend-path PATH /share/cluster/SLES9/x86_64/apps/hdf5/1.8.3/icc/bin *
>>> *append-path LD_LIBRARY_PATH
>>> /share/cluster/SLES9/x86_64/apps/hdf5/1.8.3/icc/lib *
>>> *prepend-path MANPATH
>>> /share/cluster/SLES9/x86_64/apps/hdf5/1.8.3/icc/share/man *
>>> *setenv HDF_INCL
>>> /share/cluster/SLES9/x86_64/apps/hdf5/1.8.3/icc/include *
>>> *-------------------------------------------------------------------*
>>>
>>> What is my HDF5PATH?
>>>
>>>
>>> Thanks,
>>> Paul
>>>
>>>
>>> Huaibao (Paul) Zhang
>>> *Gas Surface Interactions Lab*
>>> Department of Mechanical Engineering
>>> University of Kentucky,
>>> Lexington,
>>> KY, 40506-0503
>>> *Office*: 216 Ralph G. Anderson Building
>>> *Web*:gsil.engineering.uky.edu
>>>
>>
>>
>> --
>> What most experimenters take for granted before they begin their
>> experiments is infinitely more interesting than any results to which their
>> experiments lead.
>> -- Norbert Wiener
>>
>

-- 
What most experimenters take for granted before they begin their
experiments is infinitely more interesting than any results to which their
experiments lead.
-- Norbert Wiener
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