[petsc-users] valgrind

[paul zhang]

That is my new configuration. Is that OK?

export PETSC_DIR=`pwd`
export PETSC_ARCH=linux-gnu-intel
./configure --with-cc=gcc --with-cxx=g++ --with-fc=gfortran
--download-fblaslapack --download-mpich
 --with-valgrind-dir=/share/cluster/RHEL6.2/x86_64/apps/valgrind/3.9.0
--with-mpi=1 --with-mpi-dir=/home/hzh225/LIB_CFD/openmpi-1.8.3/


Huaibao (Paul) Zhang
*Gas Surface Interactions Lab*
Department of Mechanical Engineering
University of Kentucky,
Lexington,
KY, 40506-0503
*Office*: 216 Ralph G. Anderson Building
*Web*:gsil.engineering.uky.edu

On Mon, Dec 1, 2014 at 1:28 PM, paul zhang <paulhuaizhang at gmail.com> wrote:

> I did use the PETSc makefiles. Should I include the valgrind path in my
> own make file again?
>
> [hzh225 at dlxlogin2-2 petsc-3.5.2]$ pwd
> /home/hzh225/LIB_CFD/nP/petsc-3.5.2
> [hzh225 at dlxlogin2-2 petsc-3.5.2]$ make getincludedirs
> -I/home/hzh225/LIB_CFD/nP/petsc-3.5.2/include
> -I/home/hzh225/LIB_CFD/nP/petsc-3.5.2/linux-gnu-intel/include
> -I/share/cluster/RHEL6.2/x86_64/apps/valgrind/3.9.0/include
>
> Huaibao (Paul) Zhang
> *Gas Surface Interactions Lab*
> Department of Mechanical Engineering
> University of Kentucky,
> Lexington,
> KY, 40506-0503
> *Office*: 216 Ralph G. Anderson Building
> *Web*:gsil.engineering.uky.edu
>
> On Mon, Dec 1, 2014 at 11:55 AM, Matthew Knepley <knepley at gmail.com>
> wrote:
>
>> On Mon, Dec 1, 2014 at 10:43 AM, paul zhang <paulhuaizhang at gmail.com>
>> wrote:
>>
>>> Matt,
>>>
>>> Thanks for your reply. I am able to compile PETSc. And I went through
>>> the default tests. Now when I go to my code, I got problems.
>>>
>>
>> I am assuming that you put flags in your makefiles rather than using the
>> PETSc makefiles. You need all the includes you get from
>>
>>    make getincludedirs
>>
>>     Matt
>>
>>
>>> [hzh225 at dlxlogin2-1 petsc-3.5]$ make all
>>> [100%] Building CXX object CMakeFiles/kats.dir/main.cc.o
>>> /home/hzh225/LIB_CFD/nP/petsc-3.5.2/include/petscsys.h(1760):
>>> catastrophic error: cannot open source file "valgrind/valgrind.h"
>>>   #  include <valgrind/valgrind.h>
>>>                                   ^
>>>
>>> compilation aborted for /home/hzh225/CMake/petsc/petsc-3.5/main.cc (code
>>> 4)
>>> make[2]: *** [CMakeFiles/kats.dir/main.cc.o] Error 4
>>> make[1]: *** [CMakeFiles/kats.dir/all] Error 2
>>> make: *** [all] Error 2
>>>
>>>
>>> Huaibao (Paul) Zhang
>>> *Gas Surface Interactions Lab*
>>> Department of Mechanical Engineering
>>> University of Kentucky,
>>> Lexington,
>>> KY, 40506-0503
>>> *Office*: 216 Ralph G. Anderson Building
>>> *Web*:gsil.engineering.uky.edu
>>>
>>> On Mon, Dec 1, 2014 at 11:28 AM, Matthew Knepley <knepley at gmail.com>
>>> wrote:
>>>
>>>> On Mon, Dec 1, 2014 at 10:21 AM, paul zhang <paulhuaizhang at gmail.com>
>>>> wrote:
>>>>
>>>>> Hi All,
>>>>>
>>>>> How to enable the valgrind flag? I installed that by myself locally.
>>>>>
>>>>>       It appears you do not have valgrind installed on your system.
>>>>>
>>>>>
>>>>>                      We HIGHLY recommend you install it from
>>>>> www.valgrind.org
>>>>>
>>>>>                                                     Or install
>>>>> valgrind-devel or equivalent using your package manager.
>>>>>
>>>>>
>>>>>  Then rerun ./configure
>>>>>
>>>>>
>>>>>
>>>>>
>>>>
>>>> We could not find the valgrind header (valgrind.h). You can use
>>>>
>>>>   --with-valgrind-dir=<path>
>>>>
>>>> so that it can find the path/include/valgrind/valgrind.h
>>>>
>>>>   Thanks,
>>>>
>>>>     Matt
>>>>
>>>>
>>>>> Thanks,
>>>>> Paul
>>>>>
>>>>>
>>>>> Huaibao (Paul) Zhang
>>>>>
>>>>>
>>>>
>>>>
>>>> --
>>>> What most experimenters take for granted before they begin their
>>>> experiments is infinitely more interesting than any results to which their
>>>> experiments lead.
>>>> -- Norbert Wiener
>>>>
>>>
>>>
>>
>>
>> --
>> What most experimenters take for granted before they begin their
>> experiments is infinitely more interesting than any results to which their
>> experiments lead.
>> -- Norbert Wiener
>>
>
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.mcs.anl.gov/pipermail/petsc-users/attachments/20141201/7303e460/attachment-0001.html>