[petsc-users] Unable to configure PETSc with CUDA: Problem with thrust directory

Fri Aug 29 08:35:18 CDT 2014

Sorry about that.

Please find in attachment the configure.log file. Hope it will help you
find the error.

Christophe

CIEMAT
Laboratorio Nacional de Fusión por Confinamiento Magnético
Unidad de Materiales
Edificio 2 - Planta 0 - Despacho 28m
Avenida Complutense 40,
28040 Madrid, Spain
Tel: +34 91496 2582
Fax: +34 91346 6442

--
Q
Por favor, piense en el medio ambiente antes de imprimir este mensaje.
Please consider the environment before printing this email.

On Fri, Aug 29, 2014 at 3:28 PM, Matthew Knepley <knepley at gmail.com> wrote:

> Always attach configure.log or we cannot see what went wrong.
>
>     Matt
>
>
> On Fri, Aug 29, 2014 at 2:35 AM, Christophe Ortiz <
> christophe.ortiz at ciemat.es> wrote:
>
>> Hi Dominic and Paul,
>>
>> Thanks for your answers. Unfortunately, it did not work. Same error
>> message related to the thrust directory:
>>
>>
>> ./configure --with-x=1 --with-mpi=0 --with-cc=icc --with-cxx=icpc
>> --with-clanguage=cxx --with-fc=ifort --with-cuda=1
>> --with-cuda-dir=/usr/local/cuda-6.0 --with-cuda-arch=sm_35 --with-thrust=1
>> --with-thrust-dir=/usr/local/cuda-6.0/include --with-cusp=1
>> --with-cusp-dir=/usr/local/cuda-6.0/include --with-debugging=1
>> --with-scalar-type=real --with-precision=double --download-fblaslapack
>>
>> ===============================================================================
>>              Configuring PETSc to compile on your system
>>
>>
>> ===============================================================================
>> TESTING: checkInclude from
>> config.headers(config/BuildSystem/config/headers.py:86)
>>
>>  *******************************************************************************
>>          UNABLE to CONFIGURE with GIVEN OPTIONS    (see configure.log for
>> details):
>>
>> -------------------------------------------------------------------------------
>> --with-thrust-dir=/usr/local/cuda-6.0/include did not work
>>
>> *******************************************************************************
>>
>>
>> I do not see what else to do...I have a standard CUDA installation that
>> came with thrust.
>> I am using ubuntu 12.04, I do not know if that could help.
>> I tried with PETSc 3.4.1 and 3.5.1. Same problem.
>>
>> Christophe
>>
>>
>>
>>
>>
>>> ------------------------------
>>>
>>> Message: 3
>>> Date: Thu, 28 Aug 2014 08:38:12 -0600
>>> From: Dominic Meiser <dmeiser at txcorp.com>
>>> To: petsc-users at mcs.anl.gov
>>> Subject: Re: [petsc-users] Unable to configure PETSc with CUDA:
>>>         Problem with thrust directory
>>> Message-ID: <53FF3ED4.1090002 at txcorp.com>
>>> Content-Type: text/plain; charset=UTF-8; format=flowed
>>>
>>> Can you try configuring with
>>>
>>> --with-thrust-dir=/usr/local/cuda-6.0/include
>>>
>>> I.e. omit the 'thrust' at the end of the path. Probably you'll need the
>>> same fix with cusp:
>>>
>>> --with-cusp-dir=/usr/local/cuda-6.0/include
>>>
>>> Cheers,
>>> Dominic
>>>
>>
>>
>>
>>>
>>> On 08/28/2014 08:13 AM, Christophe Ortiz wrote:
>>> > Hi all,
>>> >
>>> > I have implemented a problem of coupled diffusion equations in 1D
>>> > using PETSc. I was able to configure PETSC with and without MPI. The
>>> > code runs well in both cases.
>>> >
>>> > Now I would like to test CUDA but I am unable to configure it. I get
>>> > an error message related to thrust directory.
>>> >
>>> > The options I use to configure are the following:
>>> >
>>> > --with-x=1 --with-mpi=0 --with-cc=icc --with-cxx=icpc
>>> > --with-clanguage=cxx --with-fc=ifort --with-cuda=1
>>> > --with-cuda-dir=/usr/local/cuda-6.0 --with-cuda-arch=sm_35
>>> > --with-cudac=/usr/local/cuda/bin/nvcc --with-thrust=1
>>> > --with-thrust-dir=/usr/local/cuda-6.0/include/thrust --with-cusp=1
>>> > --with-cusp-dir=/usr/local/cuda-6.0/include/cusp
>>> > --download-txpetscgpu=1 --with-debugging=1 --with-scalar-type=real
>>> > --with-precision=double --download-f-blas-lapack
>>> >
>>> > The error message I get is:
>>> >
>>> >
>>> ===============================================================================
>>> >              Configuring PETSc to compile on your system
>>> >
>>> ===============================================================================
>>> > TESTING: checkInclude from
>>> > config.headers(config/BuildSystem/config/headers.py:86)
>>> >
>>> *******************************************************************************
>>> >          UNABLE to CONFIGURE with GIVEN OPTIONS    (see configure.log
>>> > for details):
>>> >
>>> -------------------------------------------------------------------------------
>>> > --with-thrust-dir=/usr/local/cuda-6.0/include/thrust did not work
>>> >
>>> *******************************************************************************
>>> >
>>> >
>>> > Did I miss something ?
>>> > My GPU is a GeForce Titan Black and I am using CUDA 6.0.
>>> >
>>> > Many thanks in advance for your help.
>>> > Christophe
>>> >
>>>
>>>
>>> --
>>> Dominic Meiser
>>> Tech-X Corporation
>>> 5621 Arapahoe Avenue
>>> Boulder, CO 80303
>>> USA
>>> Telephone: 303-996-2036
>>> Fax: 303-448-7756
>>> www.txcorp.com
>>>
>>>
>>>
>>> ------------------------------
>>>
>>> Message: 4
>>> Date: Thu, 28 Aug 2014 08:30:40 -0600
>>> From: Paul Mullowney <paulmullowney at gmail.com>
>>> To: Dominic Meiser <dmeiser at txcorp.com>
>>> Cc: petsc-users at mcs.anl.gov
>>> Subject: Re: [petsc-users] Unable to configure PETSc with CUDA:
>>>         Problem with thrust directory
>>> Message-ID:
>>>         <CAMJ8fwroFUxG-rpbMpaJEw=
>>> 0aQdyNm9NMxMzsxWVGGPWZqhGCQ at mail.gmail.com>
>>> Content-Type: text/plain; charset="utf-8"
>>>
>>> Also, get rid of --download-txpetscgpu=1. That doesn't exist anymore.
>>> -Paul
>>>
>>>
>>> On Thu, Aug 28, 2014 at 8:38 AM, Dominic Meiser <dmeiser at txcorp.com>
>>> wrote:
>>>
>>> > Can you try configuring with
>>> >
>>> > --with-thrust-dir=/usr/local/cuda-6.0/include
>>> >
>>> > I.e. omit the 'thrust' at the end of the path. Probably you'll need the
>>> > same fix with cusp:
>>> >
>>> > --with-cusp-dir=/usr/local/cuda-6.0/include
>>> >
>>> > Cheers,
>>> > Dominic
>>> >
>>> >
>>> > On 08/28/2014 08:13 AM, Christophe Ortiz wrote:
>>> >
>>> >> Hi all,
>>> >>
>>> >> I have implemented a problem of coupled diffusion equations in 1D
>>> using
>>> >> PETSc. I was able to configure PETSC with and without MPI. The code
>>> runs
>>> >> well in both cases.
>>> >>
>>> >> Now I would like to test CUDA but I am unable to configure it. I get
>>> an
>>> >> error message related to thrust directory.
>>> >>
>>> >> The options I use to configure are the following:
>>> >>
>>> >> --with-x=1 --with-mpi=0 --with-cc=icc --with-cxx=icpc
>>> >> --with-clanguage=cxx --with-fc=ifort --with-cuda=1
>>> >> --with-cuda-dir=/usr/local/cuda-6.0 --with-cuda-arch=sm_35
>>> >> --with-cudac=/usr/local/cuda/bin/nvcc --with-thrust=1
>>> >> --with-thrust-dir=/usr/local/cuda-6.0/include/thrust --with-cusp=1
>>> >> --with-cusp-dir=/usr/local/cuda-6.0/include/cusp
>>> --download-txpetscgpu=1
>>> >> --with-debugging=1 --with-scalar-type=real --with-precision=double
>>> >> --download-f-blas-lapack
>>> >>
>>> >> The error message I get is:
>>> >>
>>> >> ============================================================
>>> >> ===================
>>> >>              Configuring PETSc to compile on your system
>>> >> ============================================================
>>> >> ===================
>>> >> TESTING: checkInclude from config.headers(config/
>>> >> BuildSystem/config/headers.py:86) ******************************
>>> >> *************************************************
>>> >>          UNABLE to CONFIGURE with GIVEN OPTIONS    (see configure.log
>>> for
>>> >> details):
>>> >> ------------------------------------------------------------
>>> >> -------------------
>>> >> --with-thrust-dir=/usr/local/cuda-6.0/include/thrust did not work
>>> >> ************************************************************
>>> >> *******************
>>> >>
>>> >>
>>> >> Did I miss something ?
>>> >> My GPU is a GeForce Titan Black and I am using CUDA 6.0.
>>> >>
>>> >> Many thanks in advance for your help.
>>> >> Christophe
>>> >>
>>> >>
>>> >
>>> > --
>>> > Dominic Meiser
>>> > Tech-X Corporation
>>> > 5621 Arapahoe Avenue
>>> > Boulder, CO 80303
>>> > USA
>>> > Telephone: 303-996-2036
>>> > Fax: 303-448-7756
>>> > www.txcorp.com
>>> >
>>> >
>>> -------------- next part --------------
>>> An HTML attachment was scrubbed...
>>> URL: <
>>> http://lists.mcs.anl.gov/pipermail/petsc-users/attachments/20140828/70c223ee/attachment-0001.html
>>> >
>>>
>>> ------------------------------
>>>
>>> _______________________________________________
>>> petsc-users mailing list
>>> petsc-users at mcs.anl.gov
>>> https://lists.mcs.anl.gov/mailman/listinfo/petsc-users
>>>
>>>
>>> End of petsc-users Digest, Vol 68, Issue 63
>>> *******************************************
>>>
>>> ----------------------------
>>> Confidencialidad:
>>> Este mensaje y sus ficheros adjuntos se dirige exclusivamente a su
>>> destinatario y puede contener información privilegiada o confidencial. Si
>>> no es vd. el destinatario indicado, queda notificado de que la utilización,
>>> divulgación y/o copia sin autorización está prohibida en virtud de la
>>> legislación vigente. Si ha recibido este mensaje por error, le rogamos que
>>> nos lo comunique inmediatamente respondiendo al mensaje y proceda a su
>>> destrucción.
>>>
>>> Disclaimer:
>>> This message and its attached files is intended exclusively for its
>>> recipients and may contain confidential information. If you received this
>>> e-mail in error you are hereby notified that any dissemination, copy or
>>> disclosure of this communication is strictly prohibited and may be
>>> unlawful. In this case, please notify us by a reply and delete this email
>>> and its contents immediately.
>>> ----------------------------
>>>
>>>
>>
>
>
> --
> What most experimenters take for granted before they begin their
> experiments is infinitely more interesting than any results to which their
> experiments lead.
> -- Norbert Wiener
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.mcs.anl.gov/pipermail/petsc-users/attachments/20140829/cfa1aadc/attachment-0001.html>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: configure.log
Type: text/x-log
Size: 4264725 bytes
Desc: not available
URL: <http://lists.mcs.anl.gov/pipermail/petsc-users/attachments/20140829/cfa1aadc/attachment-0001.bin>