[petsc-users] Unable to configure PETSc with CUDA: Problem with thrust directory
Matthew Knepley
knepley at gmail.com
Fri Aug 29 09:08:44 CDT 2014
On Fri, Aug 29, 2014 at 8:35 AM, Christophe Ortiz <
christophe.ortiz at ciemat.es> wrote:
> Sorry about that.
>
> Please find in attachment the configure.log file. Hope it will help you
> find the error.
>
Here is the problem:
Possible ERROR while running preprocessor: nvcc warning : The 'compute_10'
and 'sm_10' architectures are deprecated, and may be removed in a future
release.
error message = {nvcc warning : The 'compute_10' and 'sm_10' architectures
are deprecated, and may be removed in a future release.
}
meaning the nvcc compiler does not "work" as provided. Here is a workaround:
--with-cudac='nvcc --arch=sm_35'
Dominic, I think that thrust.py should depend on cuda.py. Do you know why
it does not?
Thanks,
Matt
> Christophe
>
> CIEMAT
> Laboratorio Nacional de Fusión por Confinamiento Magnético
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> On Fri, Aug 29, 2014 at 3:28 PM, Matthew Knepley <knepley at gmail.com>
> wrote:
>
>> Always attach configure.log or we cannot see what went wrong.
>>
>> Matt
>>
>>
>> On Fri, Aug 29, 2014 at 2:35 AM, Christophe Ortiz <
>> christophe.ortiz at ciemat.es> wrote:
>>
>>> Hi Dominic and Paul,
>>>
>>> Thanks for your answers. Unfortunately, it did not work. Same error
>>> message related to the thrust directory:
>>>
>>>
>>> ./configure --with-x=1 --with-mpi=0 --with-cc=icc --with-cxx=icpc
>>> --with-clanguage=cxx --with-fc=ifort --with-cuda=1
>>> --with-cuda-dir=/usr/local/cuda-6.0 --with-cuda-arch=sm_35 --with-thrust=1
>>> --with-thrust-dir=/usr/local/cuda-6.0/include --with-cusp=1
>>> --with-cusp-dir=/usr/local/cuda-6.0/include --with-debugging=1
>>> --with-scalar-type=real --with-precision=double --download-fblaslapack
>>>
>>> ===============================================================================
>>> Configuring PETSc to compile on your system
>>>
>>>
>>> ===============================================================================
>>> TESTING: checkInclude from
>>> config.headers(config/BuildSystem/config/headers.py:86)
>>>
>>> *******************************************************************************
>>> UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log
>>> for details):
>>>
>>> -------------------------------------------------------------------------------
>>> --with-thrust-dir=/usr/local/cuda-6.0/include did not work
>>>
>>> *******************************************************************************
>>>
>>>
>>> I do not see what else to do...I have a standard CUDA installation that
>>> came with thrust.
>>> I am using ubuntu 12.04, I do not know if that could help.
>>> I tried with PETSc 3.4.1 and 3.5.1. Same problem.
>>>
>>> Christophe
>>>
>>>
>>>
>>>
>>>
>>>> ------------------------------
>>>>
>>>> Message: 3
>>>> Date: Thu, 28 Aug 2014 08:38:12 -0600
>>>> From: Dominic Meiser <dmeiser at txcorp.com>
>>>> To: petsc-users at mcs.anl.gov
>>>> Subject: Re: [petsc-users] Unable to configure PETSc with CUDA:
>>>> Problem with thrust directory
>>>> Message-ID: <53FF3ED4.1090002 at txcorp.com>
>>>> Content-Type: text/plain; charset=UTF-8; format=flowed
>>>>
>>>> Can you try configuring with
>>>>
>>>> --with-thrust-dir=/usr/local/cuda-6.0/include
>>>>
>>>> I.e. omit the 'thrust' at the end of the path. Probably you'll need the
>>>> same fix with cusp:
>>>>
>>>> --with-cusp-dir=/usr/local/cuda-6.0/include
>>>>
>>>> Cheers,
>>>> Dominic
>>>>
>>>
>>>
>>>
>>>>
>>>> On 08/28/2014 08:13 AM, Christophe Ortiz wrote:
>>>> > Hi all,
>>>> >
>>>> > I have implemented a problem of coupled diffusion equations in 1D
>>>> > using PETSc. I was able to configure PETSC with and without MPI. The
>>>> > code runs well in both cases.
>>>> >
>>>> > Now I would like to test CUDA but I am unable to configure it. I get
>>>> > an error message related to thrust directory.
>>>> >
>>>> > The options I use to configure are the following:
>>>> >
>>>> > --with-x=1 --with-mpi=0 --with-cc=icc --with-cxx=icpc
>>>> > --with-clanguage=cxx --with-fc=ifort --with-cuda=1
>>>> > --with-cuda-dir=/usr/local/cuda-6.0 --with-cuda-arch=sm_35
>>>> > --with-cudac=/usr/local/cuda/bin/nvcc --with-thrust=1
>>>> > --with-thrust-dir=/usr/local/cuda-6.0/include/thrust --with-cusp=1
>>>> > --with-cusp-dir=/usr/local/cuda-6.0/include/cusp
>>>> > --download-txpetscgpu=1 --with-debugging=1 --with-scalar-type=real
>>>> > --with-precision=double --download-f-blas-lapack
>>>> >
>>>> > The error message I get is:
>>>> >
>>>> >
>>>> ===============================================================================
>>>> > Configuring PETSc to compile on your system
>>>> >
>>>> ===============================================================================
>>>> > TESTING: checkInclude from
>>>> > config.headers(config/BuildSystem/config/headers.py:86)
>>>> >
>>>> *******************************************************************************
>>>> > UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log
>>>> > for details):
>>>> >
>>>> -------------------------------------------------------------------------------
>>>> > --with-thrust-dir=/usr/local/cuda-6.0/include/thrust did not work
>>>> >
>>>> *******************************************************************************
>>>> >
>>>> >
>>>> > Did I miss something ?
>>>> > My GPU is a GeForce Titan Black and I am using CUDA 6.0.
>>>> >
>>>> > Many thanks in advance for your help.
>>>> > Christophe
>>>> >
>>>>
>>>>
>>>> --
>>>> Dominic Meiser
>>>> Tech-X Corporation
>>>> 5621 Arapahoe Avenue
>>>> Boulder, CO 80303
>>>> USA
>>>> Telephone: 303-996-2036
>>>> Fax: 303-448-7756
>>>> www.txcorp.com
>>>>
>>>>
>>>>
>>>> ------------------------------
>>>>
>>>> Message: 4
>>>> Date: Thu, 28 Aug 2014 08:30:40 -0600
>>>> From: Paul Mullowney <paulmullowney at gmail.com>
>>>> To: Dominic Meiser <dmeiser at txcorp.com>
>>>> Cc: petsc-users at mcs.anl.gov
>>>> Subject: Re: [petsc-users] Unable to configure PETSc with CUDA:
>>>> Problem with thrust directory
>>>> Message-ID:
>>>> <CAMJ8fwroFUxG-rpbMpaJEw=
>>>> 0aQdyNm9NMxMzsxWVGGPWZqhGCQ at mail.gmail.com>
>>>> Content-Type: text/plain; charset="utf-8"
>>>>
>>>> Also, get rid of --download-txpetscgpu=1. That doesn't exist anymore.
>>>> -Paul
>>>>
>>>>
>>>> On Thu, Aug 28, 2014 at 8:38 AM, Dominic Meiser <dmeiser at txcorp.com>
>>>> wrote:
>>>>
>>>> > Can you try configuring with
>>>> >
>>>> > --with-thrust-dir=/usr/local/cuda-6.0/include
>>>> >
>>>> > I.e. omit the 'thrust' at the end of the path. Probably you'll need
>>>> the
>>>> > same fix with cusp:
>>>> >
>>>> > --with-cusp-dir=/usr/local/cuda-6.0/include
>>>> >
>>>> > Cheers,
>>>> > Dominic
>>>> >
>>>> >
>>>> > On 08/28/2014 08:13 AM, Christophe Ortiz wrote:
>>>> >
>>>> >> Hi all,
>>>> >>
>>>> >> I have implemented a problem of coupled diffusion equations in 1D
>>>> using
>>>> >> PETSc. I was able to configure PETSC with and without MPI. The code
>>>> runs
>>>> >> well in both cases.
>>>> >>
>>>> >> Now I would like to test CUDA but I am unable to configure it. I get
>>>> an
>>>> >> error message related to thrust directory.
>>>> >>
>>>> >> The options I use to configure are the following:
>>>> >>
>>>> >> --with-x=1 --with-mpi=0 --with-cc=icc --with-cxx=icpc
>>>> >> --with-clanguage=cxx --with-fc=ifort --with-cuda=1
>>>> >> --with-cuda-dir=/usr/local/cuda-6.0 --with-cuda-arch=sm_35
>>>> >> --with-cudac=/usr/local/cuda/bin/nvcc --with-thrust=1
>>>> >> --with-thrust-dir=/usr/local/cuda-6.0/include/thrust --with-cusp=1
>>>> >> --with-cusp-dir=/usr/local/cuda-6.0/include/cusp
>>>> --download-txpetscgpu=1
>>>> >> --with-debugging=1 --with-scalar-type=real --with-precision=double
>>>> >> --download-f-blas-lapack
>>>> >>
>>>> >> The error message I get is:
>>>> >>
>>>> >> ============================================================
>>>> >> ===================
>>>> >> Configuring PETSc to compile on your system
>>>> >> ============================================================
>>>> >> ===================
>>>> >> TESTING: checkInclude from config.headers(config/
>>>> >> BuildSystem/config/headers.py:86) ******************************
>>>> >> *************************************************
>>>> >> UNABLE to CONFIGURE with GIVEN OPTIONS (see
>>>> configure.log for
>>>> >> details):
>>>> >> ------------------------------------------------------------
>>>> >> -------------------
>>>> >> --with-thrust-dir=/usr/local/cuda-6.0/include/thrust did not work
>>>> >> ************************************************************
>>>> >> *******************
>>>> >>
>>>> >>
>>>> >> Did I miss something ?
>>>> >> My GPU is a GeForce Titan Black and I am using CUDA 6.0.
>>>> >>
>>>> >> Many thanks in advance for your help.
>>>> >> Christophe
>>>> >>
>>>> >>
>>>> >
>>>> > --
>>>> > Dominic Meiser
>>>> > Tech-X Corporation
>>>> > 5621 Arapahoe Avenue
>>>> > Boulder, CO 80303
>>>> > USA
>>>> > Telephone: 303-996-2036
>>>> > Fax: 303-448-7756
>>>> > www.txcorp.com
>>>> >
>>>> >
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>>
>>
>> --
>> What most experimenters take for granted before they begin their
>> experiments is infinitely more interesting than any results to which their
>> experiments lead.
>> -- Norbert Wiener
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>
>
--
What most experimenters take for granted before they begin their
experiments is infinitely more interesting than any results to which their
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