[petsc-users] Compiling PETSc 3.4.3 with ICC 14.0 and OpenMPI 1.6.5

[Maxime Boissonneault]

Le 2013-10-30 17:45, Matthew Knepley a écrit :
> On Wed, Oct 30, 2013 at 4:41 PM, Maxime Boissonneault 
> <maxime.boissonneault at calculquebec.ca 
> <mailto:maxime.boissonneault at calculquebec.ca>> wrote:
>
>     Hi,
>     Here is the attached configure.log file.
>
>     I will try the flag --with-debugging tomorrow.
>
>
> Get rid of -O2: CFLAGS="-O2 -xHost -mkl -fPIC -m64" FFLAGS="-O2 -xHost 
> -mkl -fPIC -m64" --prefix=/software6/libs/petsc/3.4.3_intel
I had -O3 earlier. The error was the same. It is overwritten by the 
makefile anyway if you look in the details. This is not the source of 
the problem.
> --with-dynamic-loading
> --with-x=0 --with-mpi-compilers=1
> --with-mpi-dir=/software6/mpi/openmpi/1.6.5_intel
> --known-mpi-shared-libraries=1
> --with-debugging=no
> --with-shared-libraries=1
> --with-blas-lapack-dir=/software6/compilers/intel/composer_xe_2013_sp1/lib/intel64
> Don't need this --with-scalapack=1
> --with-scalapack-include=/software6/compilers/intel/composer_xe_2013_sp1/include
> --with-scalapack-lib=/software6/compilers/intel/composer_xe_2013_sp1/lib/intel64/libmkl_scalapack_lp64.a
> Don't need this --with-blacs=1
> --with-blacs-include=/software6/compilers/intel/composer_xe_2013_sp1/include
> --with-blacs-lib=/software6/compilers/intel/composer_xe_2013_sp1/lib/intel64/libmkl_blacs_openmpi_lp64.a
> --download-mumps=yes
> --download-ptscotch=1
> --download-superlu=yes
> --download-superlu_dist=yes
> --download-parmetis=yes
> --download-metis=yes
> --download-ml=yes
> This is deprecated. Use -pc_type gamg --download-prometheus=yes
Which part is, download-ml ? or download-hypre ? Again, this is not the 
module that fails compiling however.

Maxime
> --download-hypre=yes
>
>   Matt
>
>     Maxime
>
>     Le 2013-10-30 16:49, Matthew Knepley a écrit :
>>     On Wed, Oct 30, 2013 at 3:39 PM, Maxime Boissonneault
>>     <maxime.boissonneault at calculquebec.ca
>>     <mailto:maxime.boissonneault at calculquebec.ca>> wrote:
>>
>>         Hi,
>>         I am currently trying to compile PETSc 3.4.3 with ICC 14.0
>>         and OpenMPI 1.6.5 and it fails SuperLU_Dist.
>>
>>         I am getting the following error :
>>
>>         68303 /software6/mpi/openmpi/1.6.5_intel/bin/mpicc
>>         -I/software6/mpi/openmpi/1.6.5_intel/include
>>         -I/software6/mpi/openmpi/1.6.5_intel/include -O2 -xHost -mkl
>>         -fPIC -m64 -fPIC -O3 -DAdd_ -DUSE_VENDOR_BLAS -c pdgstrf.c
>>         68304 make[1]: Leaving directory
>>         `/software6/src/petsc-3.4.3-intel-try/externalpackages/SuperLU_DIST_3.3/SRC'
>>         68305 error #13002: unexpected CFE message argument:  e. The
>>         staggered cosine transform may be
>>         68306 warning #13003: message verification failed for: 556;
>>         reverting to internal message
>>         68307 pdgstrf.c(2672): warning #556: a value of type "int"
>>         cannot be assigned to an entity of type "MPI_Request"
>>         68308 U_diag_blk_send_req[krow] = 1; /* flag outstanding
>>         Isend */
>>         68309 ^
>>         68310
>>         68311 pdgstrf.c(2672): warning #152: Fatal error:
>>         Trigonometric Transform has failed to release the memory.
>>         68312 U_diag_blk_send_req[krow] = 1; /* flag outstanding
>>         Isend */
>>         68313 ^
>>         68314
>>         68315 compilation aborted for pdgstrf.c (code 1)
>>         68316 make[1]: *** [pdgstrf.o] Error 1
>>
>>         Anyone has a clue on to what might be going on ?
>>
>>
>>     1) Always send configure.log
>>
>>     2) It looks like an Intel compiler bug. Try building with
>>     --with-debugging first
>>
>>       Matt
>>
>>
>>         -- 
>>         ---------------------------------
>>         Maxime Boissonneault
>>         Analyste de calcul - Calcul Québec, Université Laval
>>         Ph. D. en physique
>>
>>
>>
>>
>>     -- 
>>     What most experimenters take for granted before they begin their
>>     experiments is infinitely more interesting than any results to
>>     which their experiments lead.
>>     -- Norbert Wiener
>
>
>     -- 
>     ---------------------------------
>     Maxime Boissonneault
>     Analyste de calcul - Calcul Québec, Université Laval
>     Ph. D. en physique
>
>
>
>
> -- 
> What most experimenters take for granted before they begin their 
> experiments is infinitely more interesting than any results to which 
> their experiments lead.
> -- Norbert Wiener


-- 
---------------------------------
Maxime Boissonneault
Analyste de calcul - Calcul Québec, Université Laval
Ph. D. en physique

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