[petsc-users] Compiling PETSc 3.4.3 with ICC 14.0 and OpenMPI 1.6.5

[Matthew Knepley]

On Wed, Oct 30, 2013 at 4:41 PM, Maxime Boissonneault <
maxime.boissonneault at calculquebec.ca> wrote:

>  Hi,
> Here is the attached configure.log file.
>
> I will try the flag --with-debugging tomorrow.
>

Get rid of -O2: CFLAGS="-O2 -xHost -mkl -fPIC -m64" FFLAGS="-O2 -xHost -mkl
-fPIC -m64" --prefix=/software6/libs/petsc/3.4.3_intel
--with-dynamic-loading
--with-x=0 --with-mpi-compilers=1
--with-mpi-dir=/software6/mpi/openmpi/1.6.5_intel
--known-mpi-shared-libraries=1
--with-debugging=no
--with-shared-libraries=1
--with-blas-lapack-dir=/software6/compilers/intel/composer_xe_2013_sp1/lib/intel64
Don't need this --with-scalapack=1
--with-scalapack-include=/software6/compilers/intel/composer_xe_2013_sp1/include
--with-scalapack-lib=/software6/compilers/intel/composer_xe_2013_sp1/lib/intel64/libmkl_scalapack_lp64.a
Don't need this --with-blacs=1
--with-blacs-include=/software6/compilers/intel/composer_xe_2013_sp1/include
--with-blacs-lib=/software6/compilers/intel/composer_xe_2013_sp1/lib/intel64/libmkl_blacs_openmpi_lp64.a
--download-mumps=yes
--download-ptscotch=1
--download-superlu=yes
--download-superlu_dist=yes
--download-parmetis=yes
--download-metis=yes
--download-ml=yes
This is deprecated. Use -pc_type gamg --download-prometheus=yes
--download-hypre=yes

  Matt

>
> Maxime
>
> Le 2013-10-30 16:49, Matthew Knepley a écrit :
>
> On Wed, Oct 30, 2013 at 3:39 PM, Maxime Boissonneault <
> maxime.boissonneault at calculquebec.ca> wrote:
>
>>  Hi,
>> I am currently trying to compile PETSc 3.4.3 with ICC 14.0 and OpenMPI
>> 1.6.5 and it fails SuperLU_Dist.
>>
>> I am getting the following error :
>>
>> 68303 /software6/mpi/openmpi/1.6.5_intel/bin/mpicc
>> -I/software6/mpi/openmpi/1.6.5_intel/include
>> -I/software6/mpi/openmpi/1.6.5_intel/include -O2 -xHost -mkl -fPIC -m64
>> -fPIC -O3  -DAdd_ -DUSE_VENDOR_BLAS -c pdgstrf.c
>> 68304 make[1]: Leaving directory
>> `/software6/src/petsc-3.4.3-intel-try/externalpackages/SuperLU_DIST_3.3/SRC'
>> 68305 error #13002: unexpected CFE message argument:  e. The staggered
>> cosine transform may be
>> 68306 warning #13003: message verification failed for: 556; reverting to
>> internal message
>> 68307 pdgstrf.c(2672): warning #556: a value of type "int" cannot be
>> assigned to an entity of type "MPI_Request"
>> 68308             U_diag_blk_send_req[krow] = 1; /* flag outstanding
>> Isend */
>> 68309                                       ^
>> 68310
>> 68311 pdgstrf.c(2672): warning #152: Fatal error: Trigonometric Transform
>> has failed to release the memory.
>> 68312             U_diag_blk_send_req[krow] = 1; /* flag outstanding
>> Isend */
>> 68313                                         ^
>> 68314
>> 68315 compilation aborted for pdgstrf.c (code 1)
>> 68316 make[1]: *** [pdgstrf.o] Error 1
>>
>> Anyone has a clue on to what might be going on ?
>>
>
>  1) Always send configure.log
>
>  2) It looks like an Intel compiler bug. Try building with
> --with-debugging first
>
>    Matt
>
>
>>
>> --
>> ---------------------------------
>> Maxime Boissonneault
>> Analyste de calcul - Calcul Québec, Université Laval
>> Ph. D. en physique
>>
>>
>
>
>  --
> What most experimenters take for granted before they begin their
> experiments is infinitely more interesting than any results to which their
> experiments lead.
> -- Norbert Wiener
>
>
>
> --
> ---------------------------------
> Maxime Boissonneault
> Analyste de calcul - Calcul Québec, Université Laval
> Ph. D. en physique
>
>


-- 
What most experimenters take for granted before they begin their
experiments is infinitely more interesting than any results to which their
experiments lead.
-- Norbert Wiener
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