[petsc-users] How to debug the petsc no-debug version codes

Wed Oct 23 02:57:47 CDT 2013

On Wed, Oct 23, 2013 at 1:21 AM, Rongliang Chen <rongliang.chan at gmail.com>wrote:

> Hi there,
>
> My code woks well for the petsc-3.4.2 debug version, but get the following
> errors for the no-debug version. Do you have any suggestions for debugging
> the code?
>

The stack trace shows that the SEGV happens in non-PETSc code:

  [8]PETSC ERROR: User provided function() line 0 in unknown directory
unknown file

Since it does not happen in the debugging version, it is likely that an
uninitialized variable is
being used to index into memory. Make sure you turn on all compiler
warnings and pay attention
to them in your code. Also, run it through valgrind.

   Matt

> Best,
> Rongliang
>
> -------------
> [2]PETSC ERROR: [8]PETSC ERROR: ------------------------------**
> ------------------------------**------------
> [8]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,
> probably memory access out of range
> [8]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
> [8]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/**
> documentation/faq.html#**valgrind[8]PETSC<http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[8]PETSC>ERROR: or try
> http://valgrind.org on GNU/linux and Apple Mac OS X to find memory
> corruption errors
> [8]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and
> run
> [8]PETSC ERROR: to get more information on the crash.
> [8]PETSC ERROR: --------------------- Error Message
> ------------------------------**------
> [8]PETSC ERROR: Signal received!
> [8]PETSC ERROR: ------------------------------**
> ------------------------------**------------
> [8]PETSC ERROR: Petsc Release Version 3.4.2, unknown
> [8]PETSC ERROR: See docs/changes/index.html for recent updates.
> [8]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
> [8]PETSC ERROR: See docs/index.html for manual pages.
> [8]PETSC ERROR: ------------------------------**
> ------------------------------**------------
> [8]PETSC ERROR: ./fsi3d on a Janus-nodebug-64bit named node0804 by
> ronglian Tue Oct 22 22:06:05 2013
> [8]PETSC ERROR: Libraries linked from /projects/ronglian/soft/petsc-**
> 3.4.3/Janus-nodebug-64bit/lib
> [8]PETSC ERROR: Configure run at Thu Oct 17 01:29:46 2013
> [8]PETSC ERROR: Configure options --known-level1-dcache-size=**32768
> --known-level1-dcache-**linesize=64 --known-level1-dcache-assoc=8
> --known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8
> --known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8
> --known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8
> --known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8
> --known-sizeof-MPI_Fint=4 --known-mpi-long-double=1
> --known-mpi-c-double-complex=0 --download-blacs=1
> --download-f-blas-lapack=1 --download-metis=1 --download-parmetis=1
> --download-scalapack=1 --download-superlu_dist=1
> --known-mpi-shared-libraries=0 --with-64-bit-indices --with-batch=1
> --with-debugging=0 --with-mpi-shared=1 PETSC_ARCH=Janus-nodebug-64bit
> --download-exodusii=1 --download-hdf5=1 --download-netcdf=1
> --known-64-bit-blas-indices
> [8]PETSC ERROR: ------------------------------**
> ------------------------------**------------
> [8]PETSC ERROR: User provided function() line 0 in unknown directory
> unknown file
> My Breakpoint: SetupASM Done !!!!
> [186]PETSC ERROR: ------------------------------**
> ------------------------------**------------
> [186]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,
> probably memory access out of range
> [186]PETSC ERROR: Try option -start_in_debugger or
> -on_error_attach_debugger
> [186]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/**
> documentation/faq.html#**valgrind[186]PETSC<http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[186]PETSC>ERROR: or try
> http://valgrind.org on GNU/linux and Apple Mac OS X to find memory
> corruption errors
> [186]PETSC ERROR: configure using --with-debugging=yes, recompile, link,
> and run
> [186]PETSC ERROR: to get more information on the crash.
> [186]PETSC ERROR: --------------------- Error Message
> ------------------------------**------
> [186]PETSC ERROR: [194]PETSC ERROR: [160]PETSC ERROR: [218]PETSC ERROR:
> [108]PETSC ERROR: ------------------------------**
> ------------------------------**------------
> [108]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,
> probably memory access out of range
> [108]PETSC ERROR: Try option -start_in_debugger or
> -on_error_attach_debugger
> [108]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/**
> documentation/faq.html#**valgrind[108]PETSC<http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[108]PETSC>ERROR: or try
> http://valgrind.org on GNU/linux and Apple Mac OS X to find memory
> corruption errors
> [108]PETSC ERROR: configure using --with-debugging=yes, recompile, link,
> and run
> [108]PETSC ERROR: to get more information on the crash.
> [108]PETSC ERROR: --------------------- Error Message
> ------------------------------**------
> [108]PETSC ERROR: Signal received!
> [108]PETSC ERROR: ------------------------------**
> ------------------------------**------------
> [108]PETSC ERROR: Petsc Release Version 3.4.2, unknown
> [108]PETSC ERROR: See docs/changes/index.html for recent updates.
> [108]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
> [90]PETSC ERROR: ------------------------------**
> ------------------------------**------------
> [90]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,
> probably memory access out of range
> [90]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
> [90]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/**
> documentation/faq.html#**valgrind[90]PETSC<http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[90]PETSC>ERROR: or try
> http://valgrind.org on GNU/linux and Apple Mac OS X to find memory
> corruption errors
> [90]PETSC ERROR: configure using --with-debugging=yes, recompile, link,
> and run
> [90]PETSC ERROR: to get more information on the crash.
> [90]PETSC ERROR: --------------------- Error Message
> ------------------------------**------
> [90]PETSC ERROR: Signal received!
> [90]PETSC ERROR: ------------------------------**
> ------------------------------**------------
> [90]PETSC ERROR: Petsc Release Version 3.4.2, unknown
> [90]PETSC ERROR: See docs/changes/index.html for recent updates.
> [184]PETSC ERROR: [0]PETSC ERROR: ------------------------------**
> ------------------------------**------------
> [0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,
> probably memory access out of range
> [0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
> [0]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/**
> documentation/faq.html#**valgrind[0]PETSC<http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[0]PETSC>ERROR: or try
> http://valgrind.org on GNU/linux and Apple Mac OS X to find memory
> corruption errors
> [0]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and
> run
> [0]PETSC ERROR: to get more information on the crash.
> [0]PETSC ERROR: --------------------- Error Message
> ------------------------------**------
> [0]PETSC ERROR: Signal received!
> [0]PETSC ERROR: ------------------------------**
> ------------------------------**------------
> [0]PETSC ERROR: Petsc Release Version 3.4.2, unknown
> [0]PETSC ERROR: See docs/changes/index.html for recent updates.
> [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
> [0]PETSC ERROR: See docs/index.html for manual pages.
> [0]PETSC ERROR: ------------------------------**
> ------------------------------**------------
> [0]PETSC ERROR: ./fsi3d on a Janus-nodebug-64bit named node0804 by
> ronglian Tue Oct 22 22:06:05 2013
> [0]PETSC ERROR: Libraries linked from /projects/ronglian/soft/petsc-**
> 3.4.3/Janus-nodebug-64bit/lib
> [0]PETSC ERROR: Configure run at Thu Oct 17 01:29:46 2013
> [0]PETSC ERROR: [24]PETSC ERROR: ------------------------------**
> ------------------------------**------------
> [24]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,
> probably memory access out of range
> [24]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
> [24]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/**
> documentation/faq.html#**valgrind[24]PETSC<http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[24]PETSC>ERROR: or try
> http://valgrind.org on GNU/linux and Apple Mac OS X to find memory
> corruption errors
> [24]PETSC ERROR: configure using --with-debugging=yes, recompile, link,
> and run
> [24]PETSC ERROR: to get more information on the crash.
> [24]PETSC ERROR: --------------------- Error Message
> ------------------------------**------
> [24]PETSC ERROR: Signal received!
> [24]PETSC ERROR: ------------------------------**
> ------------------------------**------------
> [24]PETSC ERROR: Petsc Release Version 3.4.2, unknown
> [24]PETSC ERROR: See docs/changes/index.html for recent updates.
> [24]PETSC ERROR: [56]PETSC ERROR: ------------------------------**
> ------------------------------**------------
> [56]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,
> probably memory access out of range
> [56]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
> [56]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/**
> documentation/faq.html#**valgrind[56]PETSC<http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[56]PETSC>ERROR: or try
> http://valgrind.org on GNU/linux and Apple Mac OS X to find memory
> corruption errors
> [56]PETSC ERROR: configure using --with-debugging=yes, recompile, link,
> and run
> [56]PETSC ERROR: to get more information on the crash.
> [76]PETSC ERROR: ------------------------------**
> ------------------------------**------------
> [76]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,
> probably memory access out of range
> [76]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
> [76]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/**
> documentation/faq.html#**valgrind[76]PETSC<http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[76]PETSC>ERROR: or try
> http://valgrind.org on GNU/linux and Apple Mac OS X to find memory
> corruption errors
> [76]PETSC ERROR: configure using --with-debugging=yes, recompile, link,
> and run
> [76]PETSC ERROR: to get more information on the crash.
> [76]PETSC ERROR: --------------------- Error Message
> ------------------------------**------
> [76]PETSC ERROR: Signal received!
> [76]PETSC ERROR: ------------------------------**
> ------------------------------**------------
> [76]PETSC ERROR: Petsc Release Version 3.4.2, unknown
> [76]PETSC ERROR: See docs/changes/index.html for recent updates.
> [76]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
> [168]PETSC ERROR: ------------------------------**
> ------------------------------**------------
> [168]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,
> probably memory access out of range
> [168]PETSC ERROR: Try option -start_in_debugger or
> -on_error_attach_debugger
> [168]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/**
> documentation/faq.html#**valgrind[168]PETSC<http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[168]PETSC>ERROR: or try
> http://valgrind.org on GNU/linux and Apple Mac OS X to find memory
> corruption errors
> [168]PETSC ERROR: configure using --with-debugging=yes, recompile, link,
> and run
> [168]PETSC ERROR: to get more information on the crash.
> [168]PETSC ERROR: --------------------- Error Message
> ------------------------------**------
> [168]PETSC ERROR: Signal received!
> [168]PETSC ERROR: ------------------------------**
> ------------------------------**------------
> [168]PETSC ERROR: Petsc Release Version 3.4.2, unknown
> [168]PETSC ERROR: See docs/changes/index.html for recent updates.
> [168]PETSC ERROR: [112]PETSC ERROR: [84]PETSC ERROR: Configure options
> --known-level1-dcache-size=**32768 --known-level1-dcache-**linesize=64
> --known-level1-dcache-assoc=8 --known-memcmp-ok=1 --known-sizeof-char=1
> --known-sizeof-void-p=8 --known-sizeof-short=2 --known-sizeof-int=4
> --known-sizeof-long=8 --known-sizeof-long-long=8 --known-sizeof-float=4
> --known-sizeof-double=8 --known-sizeof-size_t=8 --known-bits-per-byte=8
> --known-sizeof-MPI_Comm=8 --known-sizeof-MPI_Fint=4
> --known-mpi-long-double=1 --known-mpi-c-double-complex=0 --download-blacs=1
> --download-f-blas-lapack=1 --download-metis=1 --download-parmetis=1
> --download-scalapack=1 --download-superlu_dist=1
> --known-mpi-shared-libraries=0 --with-64-bit-indices --with-batch=1
> --with-debugging=0 --with-mpi-shared=1 PETSC_ARCH=Janus-nodebug-64bit
> --download-exodusii=1 --download-hdf5=1 --download-netcdf=1
> --known-64-bit-blas-indices
> [0]PETSC ERROR: ------------------------------**
> ------------------------------**------------
> [0]PETSC ERROR: User provided function() line 0 in unknown directory
> unknown file
> [26]PETSC ERROR: [236]PETSC ERROR: ------------------------------**
> ------------------------------**------------
> [236]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,
> probably memory access out of range
> [236]PETSC ERROR: Try option -start_in_debugger or
> -on_error_attach_debugger
> [236]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/**
> documentation/faq.html#**valgrind[236]PETSC<http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[236]PETSC>ERROR: or try
> http://valgrind.org on GNU/linux and Apple Mac OS X to find memory
> corruption errors
> [236]PETSC ERROR: configure using --with-debugging=yes, recompile, link,
> and run
> [236]PETSC ERROR: to get more information on the crash.
> [236]PETSC ERROR: --------------------- Error Message
> ------------------------------**------
> [236]PETSC ERROR: Signal received!
> [236]PETSC ERROR: ------------------------------**
> ------------------------------**------------
> [236]PETSC ERROR: [162]PETSC ERROR: ------------------------------**
> ------------------------------**------------
> [162]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,
> probably memory access out of range
> [162]PETSC ERROR: Try option -start_in_debugger or
> -on_error_attach_debugger
> [162]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/**
> documentation/faq.html#**valgrind[162]PETSC<http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[162]PETSC>ERROR: or try
> http://valgrind.org on GNU/linux and Apple Mac OS X to find memory
> corruption errors
> [162]PETSC ERROR: configure using --with-debugging=yes, recompile, link,
> and run
> [162]PETSC ERROR: to get more information on the crash.
> [162]PETSC ERROR: --------------------- Error Message
> ------------------------------**------
> [162]PETSC ERROR: Signal received!
> [162]PETSC ERROR: ------------------------------**
> ------------------------------**------------
> [162]PETSC ERROR: Petsc Release Version 3.4.2, unknown
> [162]PETSC ERROR: See docs/changes/index.html for recent updates.
> [162]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
> [162]PETSC ERROR: See docs/index.html for manual pages.
> [162]PETSC ERROR: ------------------------------**
> ------------------------------**------------
> [162]PETSC ERROR: ./fsi3d on a Janus-nodebug-64bit named node0845 by
> ronglian Tue Oct 22 22:06:05 2013
> [162]PETSC ERROR: Libraries linked from /projects/ronglian/soft/petsc-**
> 3.4.3/Janus-nodebug-64bit/lib
> [162]PETSC ERROR: Configure run at Thu Oct 17 01:29:46 2013
> [162]PETSC ERROR: Configure options --known-level1-dcache-size=**32768
> --known-level1-dcache-**linesize=64 --known-level1-dcache-assoc=8
> --known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8
> --known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8
> --known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8
> --known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8
> --known-sizeof-MPI_Fint=4 --known-mpi-long-double=1
> --known-mpi-c-double-complex=0 --download-blacs=1
> --download-f-blas-lapack=1 --download-metis=1 --download-parmetis=1
> --download-scalapack=1 --download-superlu_dist=1
> --known-mpi-shared-libraries=0 --with-64-bit-indices --with-batch=1
> --with-debugging=0 --with-mpi-shared=1 PETSC_ARCH=Janus-nodebug-64bit
> --download-exodusii=1 --download-hdf5=1 --download-netcdf=1
> --known-64-bit-blas-indices
> [162]PETSC ERROR: ------------------------------**
> ------------------------------**------------
> [162]PETSC ERROR: User provided function() line 0 in unknown directory
> unknown file
> [64]PETSC ERROR: ------------------------------**
> ------------------------------**------------
> [64]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,
> probably memory access out of range
> [64]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
> [64]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/**
> documentation/faq.html#**valgrind[64]PETSC<http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[64]PETSC>ERROR: or try
> http://valgrind.org on GNU/linux and Apple Mac OS X to find memory
> corruption errors
> [64]PETSC ERROR: configure using --with-debugging=yes, recompile, link,
> and run
> [64]PETSC ERROR: to get more information on the crash.
> [64]PETSC ERROR: --------------------- Error Message
> ------------------------------**------
> [64]PETSC ERROR: Signal received!
> [64]PETSC ERROR: ------------------------------**
> ------------------------------**------------
> Signal received!
> [186]PETSC ERROR: ------------------------------**
> ------------------------------**------------
> [186]PETSC ERROR: Petsc Release Version 3.4.2, unknown
> [186]PETSC ERROR: See docs/changes/index.html for recent updates.
> [186]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
> [186]PETSC ERROR: See docs/index.html for manual pages.
> [186]PETSC ERROR: ------------------------------**
> ------------------------------**------------
> [186]PETSC ERROR: ./fsi3d on a Janus-nodebug-64bit named node0868 by
> ronglian Tue Oct 22 22:06:04 2013
> [186]PETSC ERROR: Libraries linked from /projects/ronglian/soft/petsc-**
> 3.4.3/Janus-nodebug-64bit/lib
> [186]PETSC ERROR: Configure run at Thu Oct 17 01:29:46 2013
> [186]PETSC ERROR: Configure options --known-level1-dcache-size=**32768
> --known-level1-dcache-**linesize=64 --known-level1-dcache-assoc=8
> --known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8
> --known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8
> --known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8
> --known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8
> --known-sizeof-MPI_Fint=4 --known-mpi-long-double=1
> --known-mpi-c-double-complex=0 --download-blacs=1
> --download-f-blas-lapack=1 --download-metis=1 --download-parmetis=1
> --download-scalapack=1 --download-superlu_dist=1
> --known-mpi-shared-libraries=0 --with-64-bit-indices --with-batch=1
> --with-debugging=0 --with-mpi-shared=1 PETSC_ARCH=Janus-nodebug-64bit
> --download-exodusii=1 --download-hdf5=1 --download-netcdf=1
> --known-64-bit-blas-indices
> [186]PETSC ERROR: ------------------------------**
> ------------------------------**------------
> [186]PETSC ERROR: User provided function() line 0 in unknown directory
> unknown file
> [12]PETSC ERROR: [192]PETSC ERROR: ------------------------------**
> ------------------------------**------------
> [192]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,
> probably memory access out of range
> [192]PETSC ERROR: Try option -start_in_debugger or
> -on_error_attach_debugger
> [192]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/**
> documentation/faq.html#**valgrind[192]PETSC<http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[192]PETSC>ERROR: or try
> http://valgrind.org on GNU/linux and Apple Mac OS X to find memory
> corruption errors
> [192]PETSC ERROR: configure using --with-debugging=yes, recompile, link,
> and run
> [192]PETSC ERROR: to get more information on the crash.
> [192]PETSC ERROR: --------------------- Error Message
> ------------------------------**------
> [192]PETSC ERROR: Signal received!
> [192]PETSC ERROR: ------------------------------**
> ------------------------------**------------
> [192]PETSC ERROR: Petsc Release Version 3.4.2, unknown
> [192]PETSC ERROR: See docs/changes/index.html for recent updates.
> [192]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
> [192]PETSC ERROR: See docs/index.html for manual pages.
> [192]PETSC ERROR: ------------------------------**
> ------------------------------**------------
> [192]PETSC ERROR: ./fsi3d on a Janus-nodebug-64bit named node0870 by
> ronglian Tue Oct 22 22:06:05 2013
> [192]PETSC ERROR: Libraries linked from /projects/ronglian/soft/petsc-**
> 3.4.3/Janus-nodebug-64bit/lib
> [192]PETSC ERROR: Configure run at Thu Oct 17 01:29:46 2013
> [192]PETSC ERROR: Configure options --known-level1-dcache-size=**32768
> --known-level1-dcache-**linesize=64 --known-level1-dcache-assoc=8
> --known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8
> --known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8
> --known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8
> --known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8
> --known-sizeof-MPI_Fint=4 --known-mpi-long-double=1
> --known-mpi-c-double-complex=0 --download-blacs=1
> --download-f-blas-lapack=1 --download-metis=1 --download-parmetis=1
> --download-scalapack=1 --download-superlu_dist=1
> --known-mpi-shared-libraries=0 --with-64-bit-indices --with-batch=1
> --with-debugging=0 --with-mpi-shared=1 PETSC_ARCH=Janus-nodebug-64bit
> --download-exodusii=1 --download-hdf5=1 --download-netcdf=1
> --known-64-bit-blas-indices
> [192]PETSC ERROR: ------------------------------**
> ------------------------------**------------
> [192]PETSC ERROR: [96]PETSC ERROR: [128]PETSC ERROR: [36]PETSC ERROR:
> [204]PETSC ERROR: ------------------------------**
> ------------------------------**------------
> [204]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,
> probably memory access out of range
> [204]PETSC ERROR: Try option -start_in_debugger or
> -on_error_attach_debugger
> [204]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/**
> documentation/faq.html#**valgrind[204]PETSC<http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[204]PETSC>ERROR: or try
> http://valgrind.org on GNU/linux and Apple Mac OS X to find memory
> corruption errors
> [204]PETSC ERROR: configure using --with-debugging=yes, recompile, link,
> and run
> [204]PETSC ERROR: to get more information on the crash.
> [204]PETSC ERROR: --------------------- Error Message
> ------------------------------**------
> [204]PETSC ERROR: Signal received!
> [204]PETSC ERROR: ------------------------------**
> ------------------------------**------------
> [204]PETSC ERROR: Petsc Release Version 3.4.2, unknown
> [204]PETSC ERROR: See docs/changes/index.html for recent updates.
> [204]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
> [204]PETSC ERROR: See docs/index.html for manual pages.
> [204]PETSC ERROR: [208]PETSC ERROR: [114]PETSC ERROR:
> ------------------------------**------------------------------**
> ------------
> [114]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,
> probably memory access out of range
> [114]PETSC ERROR: Try option -start_in_debugger or
> -on_error_attach_debugger
> [114]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/**
> documentation/faq.html#**valgrind[114]PETSC<http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[114]PETSC>ERROR: or try
> http://valgrind.org on GNU/linux and Apple Mac OS X to find memory
> corruption errors
> [114]PETSC ERROR: configure using --with-debugging=yes, recompile, link,
> and run
> [114]PETSC ERROR: to get more information on the crash.
> [114]PETSC ERROR: --------------------- Error Message
> ------------------------------**------
> [114]PETSC ERROR: Signal received!
> [114]PETSC ERROR: ------------------------------**
> ------------------------------**------------
> [114]PETSC ERROR: Petsc Release Version 3.4.2, unknown
> [114]PETSC ERROR: See docs/changes/index.html for recent updates.
> [114]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
> [114]PETSC ERROR: See docs/index.html for manual pages.
> [114]PETSC ERROR: ------------------------------**
> ------------------------------**------------
> [114]PETSC ERROR: ./fsi3d on a Janus-nodebug-64bit named node0818 by
> ronglian Tue Oct 22 22:06:05 2013
> [114]PETSC ERROR: Libraries linked from /projects/ronglian/soft/petsc-**
> 3.4.3/Janus-nodebug-64bit/lib
> [114]PETSC ERROR: Configure run at Thu Oct 17 01:29:46 2013
> [114]PETSC ERROR: Configure options --known-level1-dcache-size=**32768
> --known-level1-dcache-**linesize=64 --known-level1-dcache-assoc=8
> --known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8
> --known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8
> --known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8
> --known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8
> --known-sizeof-MPI_Fint=4 --known-mpi-long-double=1
> --known-mpi-c-double-complex=0 --download-blacs=1
> --download-f-blas-lapack=1 --download-metis=1 --download-parmetis=1
> --download-scalapack=1 --download-superlu_dist=1
> --known-mpi-shared-libraries=0 --with-64-bit-indices --with-batch=1
> --with-debugging=0 --with-mpi-shared=1 PETSC_ARCH=Janus-nodebug-64bit
> --download-exodusii=1 --download-hdf5=1 --download-netcdf=1
> --known-64-bit-blas-indices
> [114]PETSC ERROR: ------------------------------**
> ------------------------------**------------
> [114]PETSC ERROR: User provided function() line 0 in unknown directory
> unknown file
> [164]PETSC ERROR: ------------------------------**
> ------------------------------**------------
> [164]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,
> probably memory access out of range
> [164]PETSC ERROR: Try option -start_in_debugger or
> -on_error_attach_debugger
> [164]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/**
> documentation/faq.html#**valgrind[164]PETSC<http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[164]PETSC>ERROR: or try
> http://valgrind.org on GNU/linux and Apple Mac OS X to find memory
> corruption errors
> [164]PETSC ERROR: configure using --with-debugging=yes, recompile, link,
> and run
> [164]PETSC ERROR: to get more information on the crash.
> [164]PETSC ERROR: --------------------- Error Message
> ------------------------------**------
> [164]PETSC ERROR: Signal received!
> [164]PETSC ERROR: ------------------------------**
> ------------------------------**------------
> [164]PETSC ERROR: Petsc Release Version 3.4.2, unknown
> [164]PETSC ERROR: See docs/changes/index.html for recent updates.
> [164]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
> [164]PETSC ERROR: See docs/index.html for manual pages.
> [164]PETSC ERROR: ------------------------------**
> ------------------------------**------------
> [164]PETSC ERROR: ./fsi3d on a Janus-nodebug-64bit named node0845 by
> ronglian Tue Oct 22 22:06:05 2013
> [164]PETSC ERROR: Libraries linked from /projects/ronglian/soft/petsc-**
> 3.4.3/Janus-nodebug-64bit/lib
> [164]PETSC ERROR: Configure run at Thu Oct 17 01:29:46 2013
> [164]PETSC ERROR: Configure options --known-level1-dcache-size=**32768
> --known-level1-dcache-**linesize=64 --known-level1-dcache-assoc=8
> --known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8
> --known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8
> --known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8
> --known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8
> --known-sizeof-MPI_Fint=4 --known-mpi-long-double=1
> --known-mpi-c-double-complex=0 --download-blacs=1
> --download-f-blas-lapack=1 --download-metis=1 --download-parmetis=1
> --download-scalapack=1 --download-superlu_dist=1
> --known-mpi-shared-libraries=0 --with-64-bit-indices --with-batch=1
> --with-debugging=0 --with-mpi-shared=1 PETSC_ARCH=Janus-nodebug-64bit
> --download-exodusii=1 --download-hdf5=1 --download-netcdf=1
> --known-64-bit-blas-indices
> [164]PETSC ERROR: ------------------------------**
> ------------------------------**------------
> [164]PETSC ERROR: User provided function() line 0 in unknown directory
> unknown file
> [144]PETSC ERROR: ------------------------------**
> ------------------------------**------------
> [144]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,
> probably memory access out of range
> [144]PETSC ERROR: Try option -start_in_debugger or
> -on_error_attach_debugger
> [144]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/**
> documentation/faq.html#**valgrind[144]PETSC<http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[144]PETSC>ERROR: or try
> http://valgrind.org on GNU/linux and Apple Mac OS X to find memory
> corruption errors
> [144]PETSC ERROR: configure using --with-debugging=yes, recompile, link,
> and run
> [144]PETSC ERROR: to get more information on the crash.
> [144]PETSC ERROR: --------------------- Error Message
> ------------------------------**------
> [144]PETSC ERROR: Signal received!
> [144]PETSC ERROR: ------------------------------**
> ------------------------------**------------
> [144]PETSC ERROR: Petsc Release Version 3.4.2, unknown
> [144]PETSC ERROR: See docs/changes/index.html for recent updates.
> [144]PETSC ERROR: [176]PETSC ERROR: ------------------------------**
> ------------------------------**------------
> [176]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,
> probably memory access out of range
> [176]PETSC ERROR: Try option -start_in_debugger or
> -on_error_attach_debugger
> [176]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/**
> documentation/faq.html#**valgrind[176]PETSC<http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[176]PETSC>ERROR: or try
> http://valgrind.org on GNU/linux and Apple Mac OS X to find memory
> corruption errors
> [176]PETSC ERROR: configure using --with-debugging=yes, recompile, link,
> and run
> [176]PETSC ERROR: to get more information on the crash.
> [176]PETSC ERROR: --------------------- Error Message
> ------------------------------**------
> [176]PETSC ERROR: Signal received!
> [176]PETSC ERROR: ------------------------------**
> ------------------------------**------------
> [176]PETSC ERROR: Petsc Release Version 3.4.2, unknown
> [176]PETSC ERROR: See docs/changes/index.html for recent updates.
> [176]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
> [176]PETSC ERROR: See docs/index.html for manual pages.
> [176]PETSC ERROR: ------------------------------**
> ------------------------------**------------
> [176]PETSC ERROR: ./fsi3d on a Janus-nodebug-64bit named node0856 by
> ronglian Tue Oct 22 22:06:05 2013
> [176]PETSC ERROR: Libraries linked from /projects/ronglian/soft/petsc-**
> 3.4.3/Janus-nodebug-64bit/lib
> [176]PETSC ERROR: Configure run at Thu Oct 17 01:29:46 2013
> [176]PETSC ERROR: Configure options --known-level1-dcache-size=**32768
> --known-level1-dcache-**linesize=64 --known-level1-dcache-assoc=8
> --known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8
> --known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8
> --known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8
> --known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8
> --known-sizeof-MPI_Fint=4 --known-mpi-long-double=1
> --known-mpi-c-double-complex=0 --download-blacs=1
> --download-f-blas-lapack=1 --download-metis=1 --download-parmetis=1
> --download-scalapack=1 --download-superlu_dist=1
> --known-mpi-shared-libraries=0 --with-64-bit-indices --with-batch=1
> --with-debugging=0 --with-mpi-shared=1 PETSC_ARCH=Janus-nodebug-64bit
> --download-exodusii=1 --download-hdf5=1 --download-netcdf=1
> --known-64-bit-blas-indices
> [176]PETSC ERROR: ------------------------------**
> ------------------------------**------------
> [176]PETSC ERROR: User provided function() line 0 in unknown directory
> unknown file
> [82]PETSC ERROR: ------------------------------**
> ------------------------------**------------
> [82]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,
> probably memory access out of range
> [82]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
> [82]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/**
> documentation/faq.html#**valgrind[82]PETSC<http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[82]PETSC>ERROR: or try
> http://valgrind.org on GNU/linux and Apple Mac OS X to find memory
> corruption errors
> [82]PETSC ERROR: configure using --with-debugging=yes, recompile, link,
> and run
> [82]PETSC ERROR: to get more information on the crash.
> [82]PETSC ERROR: --------------------- Error Message
> ------------------------------**------
> [82]PETSC ERROR: Signal received!
> [82]PETSC ERROR: ------------------------------**
> ------------------------------**------------
> [82]PETSC ERROR: Petsc Release Version 3.4.2, unknown
> [82]PETSC ERROR: See docs/changes/index.html for recent updates.
> [82]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
> [82]PETSC ERROR: See docs/index.html for manual pages.
> [82]PETSC ERROR: ------------------------------**
> ------------------------------**------------
> [82]PETSC ERROR: ./fsi3d on a Janus-nodebug-64bit named node0811 by
> ronglian Tue Oct 22 22:06:05 2013
> [82]PETSC ERROR: Libraries linked from /projects/ronglian/soft/petsc-**
> 3.4.3/Janus-nodebug-64bit/lib
> [82]PETSC ERROR: Configure run at Thu Oct 17 01:29:46 2013
> [82]PETSC ERROR: Configure options --known-level1-dcache-size=**32768
> --known-level1-dcache-**linesize=64 --known-level1-dcache-assoc=8
> --known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8
> --known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8
> --known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8
> --known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8
> --known-sizeof-MPI_Fint=4 --known-mpi-long-double=1
> --known-mpi-c-double-complex=0 --download-blacs=1
> --download-f-blas-lapack=1 --download-metis=1 --download-parmetis=1
> --download-scalapack=1 --download-superlu_dist=1
> --known-mpi-shared-libraries=0 --with-64-bit-indices --with-batch=1
> --with-debugging=0 --with-mpi-shared=1 PETSC_ARCH=Janus-nodebug-64bit
> --download-exodusii=1 --download-hdf5=1 --download-netcdf=1
> --known-64-bit-blas-indices
> [82]PETSC ERROR: ------------------------------**
> ------------------------------**------------
> [82]PETSC ERROR: User provided function() line 0 in unknown directory
> unknown file
> [32]PETSC ERROR: ------------------------------**
> ------------------------------**------------
> [32]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,
> probably memory access out of range
> [32]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
> [32]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/**
> documentation/faq.html#**valgrind[32]PETSC<http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[32]PETSC>ERROR: or try
> http://valgrind.org on GNU/linux and Apple Mac OS X to find memory
> corruption errors
> [32]PETSC ERROR: configure using --with-debugging=yes, recompile, link,
> and run
> [32]PETSC ERROR: to get more information on the crash.
> [32]PETSC ERROR: --------------------- Error Message
> ------------------------------**------
> [32]PETSC ERROR: Signal received!
> [32]PETSC ERROR: ------------------------------**
> ------------------------------**------------
> [32]PETSC ERROR: Petsc Release Version 3.4.2, unknown
> [32]PETSC ERROR: See docs/changes/index.html for recent updates.
> [32]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
> [32]PETSC ERROR: See docs/index.html for manual pages.
> [32]PETSC ERROR: ------------------------------**
> ------------------------------**------------
> [32]PETSC ERROR: ./fsi3d on a Janus-nodebug-64bit named node0737 by
> ronglian Tue Oct 22 22:06:04 2013
> [32]PETSC ERROR: Libraries linked from /projects/ronglian/soft/petsc-**
> 3.4.3/Janus-nodebug-64bit/lib
> [32]PETSC ERROR: Configure run at Thu Oct 17 01:29:46 2013
> [32]PETSC ERROR: Configure options --known-level1-dcache-size=**32768
> --known-level1-dcache-**linesize=64 --known-level1-dcache-assoc=8
> --known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8
> --known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8
> --known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8
> --known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8
> --known-sizeof-MPI_Fint=4 --known-mpi-long-double=1
> --known-mpi-c-double-complex=0 --download-blacs=1
> --download-f-blas-lapack=1 --download-metis=1 --download-parmetis=1
> --download-scalapack=1 --download-superlu_dist=1
> --known-mpi-shared-libraries=0 --with-64-bit-indices --with-batch=1
> --with-debugging=0 --with-mpi-shared=1 PETSC_ARCH=Janus-nodebug-64bit
> --download-exodusii=1 --download-hdf5=1 --download-netcdf=1
> --known-64-bit-blas-indices
> [32]PETSC ERROR: ------------------------------**
> ------------------------------**------------
> [32]PETSC ERROR: User provided function() line 0 in unknown directory
> unknown file
> [72]PETSC ERROR: [220]PETSC ERROR: ------------------------------**
> ------------------------------**------------
> [220]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,
> probably memory access out of range
> [220]PETSC ERROR: Try option -start_in_debugger or
> -on_error_attach_debugger
> [220]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/**
> documentation/faq.html#**valgrind[220]PETSC<http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[220]PETSC>ERROR: or try
> http://valgrind.org on GNU/linux and Apple Mac OS X to find memory
> corruption errors
> [220]PETSC ERROR: configure using --with-debugging=yes, recompile, link,
> and run
> [220]PETSC ERROR: to get more information on the crash.
> [220]PETSC ERROR: --------------------- Error Message
> ------------------------------**------
> [220]PETSC ERROR: Signal received!
> [220]PETSC ERROR: ------------------------------**
> ------------------------------**------------
> [220]PETSC ERROR: Petsc Release Version 3.4.2, unknown
> [220]PETSC ERROR: See docs/changes/index.html for recent updates.
> [220]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
> [220]PETSC ERROR: See docs/index.html for manual pages.
> [220]PETSC ERROR: ------------------------------**
> ------------------------------**------------
> [220]PETSC ERROR: ./fsi3d on a Janus-nodebug-64bit named node0880 by
> ronglian Tue Oct 22 22:06:05 2013
> [220]PETSC ERROR: Libraries linked from /projects/ronglian/soft/petsc-**
> 3.4.3/Janus-nodebug-64bit/lib
> [220]PETSC ERROR: Configure run at Thu Oct 17 01:29:46 2013
> [220]PETSC ERROR: Configure options --known-level1-dcache-size=**32768
> --known-level1-dcache-**linesize=64 --known-level1-dcache-assoc=8
> --known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8
> --known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8
> --known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8
> --known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8
> --known-sizeof-MPI_Fint=4 --known-mpi-long-double=1
> --known-mpi-c-double-complex=0 --download-blacs=1
> --download-f-blas-lapack=1 --download-metis=1 --download-parmetis=1
> --download-scalapack=1 --download-superlu_dist=1
> --known-mpi-shared-libraries=0 --with-64-bit-indices --with-batch=1
> --with-debugging=0 --with-mpi-shared=1 PETSC_ARCH=Janus-nodebug-64bit
> --download-exodusii=1 --download-hdf5=1 --download-netcdf=1
> --known-64-bit-blas-indices
> [220]PETSC ERROR: ------------------------------**
> ------------------------------**------------
> [220]PETSC ERROR: User provided function() line 0 in unknown directory
> unknown file
> [178]PETSC ERROR: [68]PETSC ERROR: ------------------------------**
> ------------------------------**------------
> [68]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,
> probably memory access out of range
> [68]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
> [68]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/**
> documentation/faq.html#**valgrind[68]PETSC<http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[68]PETSC>ERROR: or try
> http://valgrind.org on GNU/linux and Apple Mac OS X to find memory
> corruption errors
> [68]PETSC ERROR: configure using --with-debugging=yes, recompile, link,
> and run
> [68]PETSC ERROR: to get more information on the crash.
> [68]PETSC ERROR: --------------------- Error Message
> ------------------------------**------
> [68]PETSC ERROR: Signal received!
> [68]PETSC ERROR: ------------------------------**
> ------------------------------**------------
> [68]PETSC ERROR: Petsc Release Version 3.4.2, unknown
> [68]PETSC ERROR: See docs/changes/index.html for recent updates.
> [68]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
> [68]PETSC ERROR: See docs/index.html for manual pages.
> [68]PETSC ERROR: ------------------------------**
> ------------------------------**------------
> [68]PETSC ERROR: ./fsi3d on a Janus-nodebug-64bit named node0810 by
> ronglian Tue Oct 22 22:06:05 2013
> [68]PETSC ERROR: Libraries linked from /projects/ronglian/soft/petsc-**
> 3.4.3/Janus-nodebug-64bit/lib
> [68]PETSC ERROR: Configure run at Thu Oct 17 01:29:46 2013
> [68]PETSC ERROR: Configure options --known-level1-dcache-size=**32768
> --known-level1-dcache-**linesize=64 --known-level1-dcache-assoc=8
> --known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8
> --known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8
> --known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8
> --known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8
> --known-sizeof-MPI_Fint=4 --known-mpi-long-double=1
> --known-mpi-c-double-complex=0 --download-blacs=1
> --download-f-blas-lapack=1 --download-metis=1 --download-parmetis=1
> --download-scalapack=1 --download-superlu_dist=1
> --known-mpi-shared-libraries=0 --with-64-bit-indices --with-batch=1
> --with-debugging=0 --with-mpi-shared=1 PETSC_ARCH=Janus-nodebug-64bit
> --download-exodusii=1 --download-hdf5=1 --download-netcdf=1
> --known-64-bit-blas-indices
> [68]PETSC ERROR: ------------------------------**
> ------------------------------**------------
> [68]PETSC ERROR: User provided function() line 0 in unknown directory
> unknown file
> [88]PETSC ERROR: ------------------------------**
> ------------------------------**------------
> [88]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,
> probably memory access out of range
> [88]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
> [88]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/**
> documentation/faq.html#**valgrind[88]PETSC<http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[88]PETSC>ERROR: or try
> http://valgrind.org on GNU/linux and Apple Mac OS X to find memory
> corruption errors
> [88]PETSC ERROR: configure using --with-debugging=yes, recompile, link,
> and run
> [88]PETSC ERROR: to get more information on the crash.
> [88]PETSC ERROR: --------------------- Error Message
> ------------------------------**------
> [88]PETSC ERROR: Signal received!
> [88]PETSC ERROR: ------------------------------**
> ------------------------------**------------
> [88]PETSC ERROR: Petsc Release Version 3.4.2, unknown
> [88]PETSC ERROR: See docs/changes/index.html for recent updates.
> [88]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
> [88]PETSC ERROR: See docs/index.html for manual pages.
> [88]PETSC ERROR: ------------------------------**
> ------------------------------**------------
> [88]PETSC ERROR: ./fsi3d on a Janus-nodebug-64bit named node0814 by
> ronglian Tue Oct 22 22:06:05 2013
> [88]PETSC ERROR: Libraries linked from /projects/ronglian/soft/petsc-**
> 3.4.3/Janus-nodebug-64bit/lib
> [88]PETSC ERROR: Configure run at Thu Oct 17 01:29:46 2013
> [88]PETSC ERROR: Configure options --known-level1-dcache-size=**32768
> --known-level1-dcache-**linesize=64 --known-level1-dcache-assoc=8
> --known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8
> --known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8
> --known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8
> --known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8
> --known-sizeof-MPI_Fint=4 --known-mpi-long-double=1
> --known-mpi-c-double-complex=0 --download-blacs=1
> --download-f-blas-lapack=1 --download-metis=1 --download-parmetis=1
> --download-scalapack=1 --download-superlu_dist=1
> --known-mpi-shared-libraries=0 --with-64-bit-indices --with-batch=1
> --with-debugging=0 --with-mpi-shared=1 PETSC_ARCH=Janus-nodebug-64bit
> --download-exodusii=1 --download-hdf5=1 --download-netcdf=1
> --known-64-bit-blas-indices
> [88]PETSC ERROR: ------------------------------**
> ------------------------------**------------
> [88]PETSC ERROR: User provided function() line 0 in unknown directory
> unknown file
> [196]PETSC ERROR: ------------------------------**
> ------------------------------**------------
> [196]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,
> probably memory access out of range
> [196]PETSC ERROR: Try option -start_in_debugger or
> -on_error_attach_debugger
> [196]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/**
> documentation/faq.html#**valgrind[196]PETSC<http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[196]PETSC>ERROR: or try
> http://valgrind.org on GNU/linux and Apple Mac OS X to find memory
> corruption errors
> [196]PETSC ERROR: configure using --with-debugging=yes, recompile, link,
> and run
> [196]PETSC ERROR: to get more information on the crash.
> [196]PETSC ERROR: --------------------- Error Message
> ------------------------------**------
> [196]PETSC ERROR: Signal received!
> [196]PETSC ERROR: ------------------------------**
> ------------------------------**------------
> [196]PETSC ERROR: Petsc Release Version 3.4.2, unknown
> [196]PETSC ERROR: See docs/changes/index.html for recent updates.
> [196]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
> [196]PETSC ERROR: See docs/index.html for manual pages.
> [196]PETSC ERROR: ------------------------------**
> ------------------------------**------------
> [196]PETSC ERROR: ./fsi3d on a Janus-nodebug-64bit named node0870 by
> ronglian Tue Oct 22 22:06:05 2013
> [196]PETSC ERROR: Libraries linked from /projects/ronglian/soft/petsc-**
> 3.4.3/Janus-nodebug-64bit/lib
> [196]PETSC ERROR: Configure run at Thu Oct 17 01:29:46 2013
> [196]PETSC ERROR: Configure options --known-level1-dcache-size=**32768
> --known-level1-dcache-**linesize=64 --known-level1-dcache-assoc=8
> --known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8
> --known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8
> --known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8
> --known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8
> --known-sizeof-MPI_Fint=4 --known-mpi-long-double=1
> --known-mpi-c-double-complex=0 --download-blacs=1
> --download-f-blas-lapack=1 --download-metis=1 --download-parmetis=1
> --download-scalapack=1 --download-superlu_dist=1
> --known-mpi-shared-libraries=0 --with-64-bit-indices --with-batch=1
> --with-debugging=0 --with-mpi-shared=1 PETSC_ARCH=Janus-nodebug-64bit
> --download-exodusii=1 --download-hdf5=1 --download-netcdf=1
> --known-64-bit-blas-indices
> [196]PETSC ERROR: ------------------------------**
> ------------------------------**------------
> [196]PETSC ERROR: User provided function() line 0 in unknown directory
> unknown file
> [180]PETSC ERROR: ------------------------------**
> ------------------------------**------------
> [180]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,
> probably memory access out of range
> [180]PETSC ERROR: Try option -start_in_debugger or
> -on_error_attach_debugger
> [180]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/**
> documentation/faq.html#**valgrind[180]PETSC<http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[180]PETSC>ERROR: or try
> http://valgrind.org on GNU/linux and Apple Mac OS X to find memory
> corruption errors
> [180]PETSC ERROR: configure using --with-debugging=yes, recompile, link,
> and run
> [180]PETSC ERROR: to get more information on the crash.
> [180]PETSC ERROR: --------------------- Error Message
> ------------------------------**------
> [180]PETSC ERROR: Signal received!
>

-- 
What most experimenters take for granted before they begin their
experiments is infinitely more interesting than any results to which their
experiments lead.
-- Norbert Wiener
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