<div dir="ltr">On Wed, Oct 23, 2013 at 1:21 AM, Rongliang Chen <span dir="ltr"><<a href="mailto:rongliang.chan@gmail.com" target="_blank">rongliang.chan@gmail.com</a>></span> wrote:<br><div class="gmail_extra"><div class="gmail_quote">
<blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-color:rgb(204,204,204);border-left-style:solid;padding-left:1ex">Hi there,<br>
<br>
My code woks well for the petsc-3.4.2 debug version, but get the following errors for the no-debug version. Do you have any suggestions for debugging the code?<br></blockquote><div><br></div><div>The stack trace shows that the SEGV happens in non-PETSc code:</div>
<div><br></div><div> [8]PETSC ERROR: User provided function() line 0 in unknown directory unknown file</div><div><br></div><div>Since it does not happen in the debugging version, it is likely that an uninitialized variable is</div>
<div>being used to index into memory. Make sure you turn on all compiler warnings and pay attention</div><div>to them in your code. Also, run it through valgrind.</div><div><br></div><div> Matt</div><div> </div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-color:rgb(204,204,204);border-left-style:solid;padding-left:1ex">
Best,<br>
Rongliang<br>
<br>
-------------<br>
[2]PETSC ERROR: [8]PETSC ERROR: ------------------------------<u></u>------------------------------<u></u>------------<br>
[8]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range<br>
[8]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger<br>
[8]PETSC ERROR: or see <a href="http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[8]PETSC" target="_blank">http://www.mcs.anl.gov/petsc/<u></u>documentation/faq.html#<u></u>valgrind[8]PETSC</a> ERROR: or try <a href="http://valgrind.org" target="_blank">http://valgrind.org</a> on GNU/linux and Apple Mac OS X to find memory corruption errors<br>
[8]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run<br>
[8]PETSC ERROR: to get more information on the crash.<br>
[8]PETSC ERROR: --------------------- Error Message ------------------------------<u></u>------<br>
[8]PETSC ERROR: Signal received!<br>
[8]PETSC ERROR: ------------------------------<u></u>------------------------------<u></u>------------<br>
[8]PETSC ERROR: Petsc Release Version 3.4.2, unknown<br>
[8]PETSC ERROR: See docs/changes/index.html for recent updates.<br>
[8]PETSC ERROR: See docs/faq.html for hints about trouble shooting.<br>
[8]PETSC ERROR: See docs/index.html for manual pages.<br>
[8]PETSC ERROR: ------------------------------<u></u>------------------------------<u></u>------------<br>
[8]PETSC ERROR: ./fsi3d on a Janus-nodebug-64bit named node0804 by ronglian Tue Oct 22 22:06:05 2013<br>
[8]PETSC ERROR: Libraries linked from /projects/ronglian/soft/petsc-<u></u>3.4.3/Janus-nodebug-64bit/lib<br>
[8]PETSC ERROR: Configure run at Thu Oct 17 01:29:46 2013<br>
[8]PETSC ERROR: Configure options --known-level1-dcache-size=<u></u>32768 --known-level1-dcache-<u></u>linesize=64 --known-level1-dcache-assoc=8 --known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8 --known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8 --known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8 --known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8 --known-sizeof-MPI_Fint=4 --known-mpi-long-double=1 --known-mpi-c-double-complex=0 --download-blacs=1 --download-f-blas-lapack=1 --download-metis=1 --download-parmetis=1 --download-scalapack=1 --download-superlu_dist=1 --known-mpi-shared-libraries=0 --with-64-bit-indices --with-batch=1 --with-debugging=0 --with-mpi-shared=1 PETSC_ARCH=Janus-nodebug-64bit --download-exodusii=1 --download-hdf5=1 --download-netcdf=1 --known-64-bit-blas-indices<br>
[8]PETSC ERROR: ------------------------------<u></u>------------------------------<u></u>------------<br>
[8]PETSC ERROR: User provided function() line 0 in unknown directory unknown file<br>
My Breakpoint: SetupASM Done !!!!<br>
[186]PETSC ERROR: ------------------------------<u></u>------------------------------<u></u>------------<br>
[186]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range<br>
[186]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger<br>
[186]PETSC ERROR: or see <a href="http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[186]PETSC" target="_blank">http://www.mcs.anl.gov/petsc/<u></u>documentation/faq.html#<u></u>valgrind[186]PETSC</a> ERROR: or try <a href="http://valgrind.org" target="_blank">http://valgrind.org</a> on GNU/linux and Apple Mac OS X to find memory corruption errors<br>
[186]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run<br>
[186]PETSC ERROR: to get more information on the crash.<br>
[186]PETSC ERROR: --------------------- Error Message ------------------------------<u></u>------<br>
[186]PETSC ERROR: [194]PETSC ERROR: [160]PETSC ERROR: [218]PETSC ERROR: [108]PETSC ERROR: ------------------------------<u></u>------------------------------<u></u>------------<br>
[108]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range<br>
[108]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger<br>
[108]PETSC ERROR: or see <a href="http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[108]PETSC" target="_blank">http://www.mcs.anl.gov/petsc/<u></u>documentation/faq.html#<u></u>valgrind[108]PETSC</a> ERROR: or try <a href="http://valgrind.org" target="_blank">http://valgrind.org</a> on GNU/linux and Apple Mac OS X to find memory corruption errors<br>
[108]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run<br>
[108]PETSC ERROR: to get more information on the crash.<br>
[108]PETSC ERROR: --------------------- Error Message ------------------------------<u></u>------<br>
[108]PETSC ERROR: Signal received!<br>
[108]PETSC ERROR: ------------------------------<u></u>------------------------------<u></u>------------<br>
[108]PETSC ERROR: Petsc Release Version 3.4.2, unknown<br>
[108]PETSC ERROR: See docs/changes/index.html for recent updates.<br>
[108]PETSC ERROR: See docs/faq.html for hints about trouble shooting.<br>
[90]PETSC ERROR: ------------------------------<u></u>------------------------------<u></u>------------<br>
[90]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range<br>
[90]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger<br>
[90]PETSC ERROR: or see <a href="http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[90]PETSC" target="_blank">http://www.mcs.anl.gov/petsc/<u></u>documentation/faq.html#<u></u>valgrind[90]PETSC</a> ERROR: or try <a href="http://valgrind.org" target="_blank">http://valgrind.org</a> on GNU/linux and Apple Mac OS X to find memory corruption errors<br>
[90]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run<br>
[90]PETSC ERROR: to get more information on the crash.<br>
[90]PETSC ERROR: --------------------- Error Message ------------------------------<u></u>------<br>
[90]PETSC ERROR: Signal received!<br>
[90]PETSC ERROR: ------------------------------<u></u>------------------------------<u></u>------------<br>
[90]PETSC ERROR: Petsc Release Version 3.4.2, unknown<br>
[90]PETSC ERROR: See docs/changes/index.html for recent updates.<br>
[184]PETSC ERROR: [0]PETSC ERROR: ------------------------------<u></u>------------------------------<u></u>------------<br>
[0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range<br>
[0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger<br>
[0]PETSC ERROR: or see <a href="http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[0]PETSC" target="_blank">http://www.mcs.anl.gov/petsc/<u></u>documentation/faq.html#<u></u>valgrind[0]PETSC</a> ERROR: or try <a href="http://valgrind.org" target="_blank">http://valgrind.org</a> on GNU/linux and Apple Mac OS X to find memory corruption errors<br>
[0]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run<br>
[0]PETSC ERROR: to get more information on the crash.<br>
[0]PETSC ERROR: --------------------- Error Message ------------------------------<u></u>------<br>
[0]PETSC ERROR: Signal received!<br>
[0]PETSC ERROR: ------------------------------<u></u>------------------------------<u></u>------------<br>
[0]PETSC ERROR: Petsc Release Version 3.4.2, unknown<br>
[0]PETSC ERROR: See docs/changes/index.html for recent updates.<br>
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.<br>
[0]PETSC ERROR: See docs/index.html for manual pages.<br>
[0]PETSC ERROR: ------------------------------<u></u>------------------------------<u></u>------------<br>
[0]PETSC ERROR: ./fsi3d on a Janus-nodebug-64bit named node0804 by ronglian Tue Oct 22 22:06:05 2013<br>
[0]PETSC ERROR: Libraries linked from /projects/ronglian/soft/petsc-<u></u>3.4.3/Janus-nodebug-64bit/lib<br>
[0]PETSC ERROR: Configure run at Thu Oct 17 01:29:46 2013<br>
[0]PETSC ERROR: [24]PETSC ERROR: ------------------------------<u></u>------------------------------<u></u>------------<br>
[24]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range<br>
[24]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger<br>
[24]PETSC ERROR: or see <a href="http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[24]PETSC" target="_blank">http://www.mcs.anl.gov/petsc/<u></u>documentation/faq.html#<u></u>valgrind[24]PETSC</a> ERROR: or try <a href="http://valgrind.org" target="_blank">http://valgrind.org</a> on GNU/linux and Apple Mac OS X to find memory corruption errors<br>
[24]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run<br>
[24]PETSC ERROR: to get more information on the crash.<br>
[24]PETSC ERROR: --------------------- Error Message ------------------------------<u></u>------<br>
[24]PETSC ERROR: Signal received!<br>
[24]PETSC ERROR: ------------------------------<u></u>------------------------------<u></u>------------<br>
[24]PETSC ERROR: Petsc Release Version 3.4.2, unknown<br>
[24]PETSC ERROR: See docs/changes/index.html for recent updates.<br>
[24]PETSC ERROR: [56]PETSC ERROR: ------------------------------<u></u>------------------------------<u></u>------------<br>
[56]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range<br>
[56]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger<br>
[56]PETSC ERROR: or see <a href="http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[56]PETSC" target="_blank">http://www.mcs.anl.gov/petsc/<u></u>documentation/faq.html#<u></u>valgrind[56]PETSC</a> ERROR: or try <a href="http://valgrind.org" target="_blank">http://valgrind.org</a> on GNU/linux and Apple Mac OS X to find memory corruption errors<br>
[56]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run<br>
[56]PETSC ERROR: to get more information on the crash.<br>
[76]PETSC ERROR: ------------------------------<u></u>------------------------------<u></u>------------<br>
[76]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range<br>
[76]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger<br>
[76]PETSC ERROR: or see <a href="http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[76]PETSC" target="_blank">http://www.mcs.anl.gov/petsc/<u></u>documentation/faq.html#<u></u>valgrind[76]PETSC</a> ERROR: or try <a href="http://valgrind.org" target="_blank">http://valgrind.org</a> on GNU/linux and Apple Mac OS X to find memory corruption errors<br>
[76]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run<br>
[76]PETSC ERROR: to get more information on the crash.<br>
[76]PETSC ERROR: --------------------- Error Message ------------------------------<u></u>------<br>
[76]PETSC ERROR: Signal received!<br>
[76]PETSC ERROR: ------------------------------<u></u>------------------------------<u></u>------------<br>
[76]PETSC ERROR: Petsc Release Version 3.4.2, unknown<br>
[76]PETSC ERROR: See docs/changes/index.html for recent updates.<br>
[76]PETSC ERROR: See docs/faq.html for hints about trouble shooting.<br>
[168]PETSC ERROR: ------------------------------<u></u>------------------------------<u></u>------------<br>
[168]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range<br>
[168]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger<br>
[168]PETSC ERROR: or see <a href="http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[168]PETSC" target="_blank">http://www.mcs.anl.gov/petsc/<u></u>documentation/faq.html#<u></u>valgrind[168]PETSC</a> ERROR: or try <a href="http://valgrind.org" target="_blank">http://valgrind.org</a> on GNU/linux and Apple Mac OS X to find memory corruption errors<br>
[168]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run<br>
[168]PETSC ERROR: to get more information on the crash.<br>
[168]PETSC ERROR: --------------------- Error Message ------------------------------<u></u>------<br>
[168]PETSC ERROR: Signal received!<br>
[168]PETSC ERROR: ------------------------------<u></u>------------------------------<u></u>------------<br>
[168]PETSC ERROR: Petsc Release Version 3.4.2, unknown<br>
[168]PETSC ERROR: See docs/changes/index.html for recent updates.<br>
[168]PETSC ERROR: [112]PETSC ERROR: [84]PETSC ERROR: Configure options --known-level1-dcache-size=<u></u>32768 --known-level1-dcache-<u></u>linesize=64 --known-level1-dcache-assoc=8 --known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8 --known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8 --known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8 --known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8 --known-sizeof-MPI_Fint=4 --known-mpi-long-double=1 --known-mpi-c-double-complex=0 --download-blacs=1 --download-f-blas-lapack=1 --download-metis=1 --download-parmetis=1 --download-scalapack=1 --download-superlu_dist=1 --known-mpi-shared-libraries=0 --with-64-bit-indices --with-batch=1 --with-debugging=0 --with-mpi-shared=1 PETSC_ARCH=Janus-nodebug-64bit --download-exodusii=1 --download-hdf5=1 --download-netcdf=1 --known-64-bit-blas-indices<br>
[0]PETSC ERROR: ------------------------------<u></u>------------------------------<u></u>------------<br>
[0]PETSC ERROR: User provided function() line 0 in unknown directory unknown file<br>
[26]PETSC ERROR: [236]PETSC ERROR: ------------------------------<u></u>------------------------------<u></u>------------<br>
[236]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range<br>
[236]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger<br>
[236]PETSC ERROR: or see <a href="http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[236]PETSC" target="_blank">http://www.mcs.anl.gov/petsc/<u></u>documentation/faq.html#<u></u>valgrind[236]PETSC</a> ERROR: or try <a href="http://valgrind.org" target="_blank">http://valgrind.org</a> on GNU/linux and Apple Mac OS X to find memory corruption errors<br>
[236]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run<br>
[236]PETSC ERROR: to get more information on the crash.<br>
[236]PETSC ERROR: --------------------- Error Message ------------------------------<u></u>------<br>
[236]PETSC ERROR: Signal received!<br>
[236]PETSC ERROR: ------------------------------<u></u>------------------------------<u></u>------------<br>
[236]PETSC ERROR: [162]PETSC ERROR: ------------------------------<u></u>------------------------------<u></u>------------<br>
[162]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range<br>
[162]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger<br>
[162]PETSC ERROR: or see <a href="http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[162]PETSC" target="_blank">http://www.mcs.anl.gov/petsc/<u></u>documentation/faq.html#<u></u>valgrind[162]PETSC</a> ERROR: or try <a href="http://valgrind.org" target="_blank">http://valgrind.org</a> on GNU/linux and Apple Mac OS X to find memory corruption errors<br>
[162]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run<br>
[162]PETSC ERROR: to get more information on the crash.<br>
[162]PETSC ERROR: --------------------- Error Message ------------------------------<u></u>------<br>
[162]PETSC ERROR: Signal received!<br>
[162]PETSC ERROR: ------------------------------<u></u>------------------------------<u></u>------------<br>
[162]PETSC ERROR: Petsc Release Version 3.4.2, unknown<br>
[162]PETSC ERROR: See docs/changes/index.html for recent updates.<br>
[162]PETSC ERROR: See docs/faq.html for hints about trouble shooting.<br>
[162]PETSC ERROR: See docs/index.html for manual pages.<br>
[162]PETSC ERROR: ------------------------------<u></u>------------------------------<u></u>------------<br>
[162]PETSC ERROR: ./fsi3d on a Janus-nodebug-64bit named node0845 by ronglian Tue Oct 22 22:06:05 2013<br>
[162]PETSC ERROR: Libraries linked from /projects/ronglian/soft/petsc-<u></u>3.4.3/Janus-nodebug-64bit/lib<br>
[162]PETSC ERROR: Configure run at Thu Oct 17 01:29:46 2013<br>
[162]PETSC ERROR: Configure options --known-level1-dcache-size=<u></u>32768 --known-level1-dcache-<u></u>linesize=64 --known-level1-dcache-assoc=8 --known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8 --known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8 --known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8 --known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8 --known-sizeof-MPI_Fint=4 --known-mpi-long-double=1 --known-mpi-c-double-complex=0 --download-blacs=1 --download-f-blas-lapack=1 --download-metis=1 --download-parmetis=1 --download-scalapack=1 --download-superlu_dist=1 --known-mpi-shared-libraries=0 --with-64-bit-indices --with-batch=1 --with-debugging=0 --with-mpi-shared=1 PETSC_ARCH=Janus-nodebug-64bit --download-exodusii=1 --download-hdf5=1 --download-netcdf=1 --known-64-bit-blas-indices<br>
[162]PETSC ERROR: ------------------------------<u></u>------------------------------<u></u>------------<br>
[162]PETSC ERROR: User provided function() line 0 in unknown directory unknown file<br>
[64]PETSC ERROR: ------------------------------<u></u>------------------------------<u></u>------------<br>
[64]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range<br>
[64]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger<br>
[64]PETSC ERROR: or see <a href="http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[64]PETSC" target="_blank">http://www.mcs.anl.gov/petsc/<u></u>documentation/faq.html#<u></u>valgrind[64]PETSC</a> ERROR: or try <a href="http://valgrind.org" target="_blank">http://valgrind.org</a> on GNU/linux and Apple Mac OS X to find memory corruption errors<br>
[64]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run<br>
[64]PETSC ERROR: to get more information on the crash.<br>
[64]PETSC ERROR: --------------------- Error Message ------------------------------<u></u>------<br>
[64]PETSC ERROR: Signal received!<br>
[64]PETSC ERROR: ------------------------------<u></u>------------------------------<u></u>------------<br>
Signal received!<br>
[186]PETSC ERROR: ------------------------------<u></u>------------------------------<u></u>------------<br>
[186]PETSC ERROR: Petsc Release Version 3.4.2, unknown<br>
[186]PETSC ERROR: See docs/changes/index.html for recent updates.<br>
[186]PETSC ERROR: See docs/faq.html for hints about trouble shooting.<br>
[186]PETSC ERROR: See docs/index.html for manual pages.<br>
[186]PETSC ERROR: ------------------------------<u></u>------------------------------<u></u>------------<br>
[186]PETSC ERROR: ./fsi3d on a Janus-nodebug-64bit named node0868 by ronglian Tue Oct 22 22:06:04 2013<br>
[186]PETSC ERROR: Libraries linked from /projects/ronglian/soft/petsc-<u></u>3.4.3/Janus-nodebug-64bit/lib<br>
[186]PETSC ERROR: Configure run at Thu Oct 17 01:29:46 2013<br>
[186]PETSC ERROR: Configure options --known-level1-dcache-size=<u></u>32768 --known-level1-dcache-<u></u>linesize=64 --known-level1-dcache-assoc=8 --known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8 --known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8 --known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8 --known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8 --known-sizeof-MPI_Fint=4 --known-mpi-long-double=1 --known-mpi-c-double-complex=0 --download-blacs=1 --download-f-blas-lapack=1 --download-metis=1 --download-parmetis=1 --download-scalapack=1 --download-superlu_dist=1 --known-mpi-shared-libraries=0 --with-64-bit-indices --with-batch=1 --with-debugging=0 --with-mpi-shared=1 PETSC_ARCH=Janus-nodebug-64bit --download-exodusii=1 --download-hdf5=1 --download-netcdf=1 --known-64-bit-blas-indices<br>
[186]PETSC ERROR: ------------------------------<u></u>------------------------------<u></u>------------<br>
[186]PETSC ERROR: User provided function() line 0 in unknown directory unknown file<br>
[12]PETSC ERROR: [192]PETSC ERROR: ------------------------------<u></u>------------------------------<u></u>------------<br>
[192]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range<br>
[192]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger<br>
[192]PETSC ERROR: or see <a href="http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[192]PETSC" target="_blank">http://www.mcs.anl.gov/petsc/<u></u>documentation/faq.html#<u></u>valgrind[192]PETSC</a> ERROR: or try <a href="http://valgrind.org" target="_blank">http://valgrind.org</a> on GNU/linux and Apple Mac OS X to find memory corruption errors<br>
[192]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run<br>
[192]PETSC ERROR: to get more information on the crash.<br>
[192]PETSC ERROR: --------------------- Error Message ------------------------------<u></u>------<br>
[192]PETSC ERROR: Signal received!<br>
[192]PETSC ERROR: ------------------------------<u></u>------------------------------<u></u>------------<br>
[192]PETSC ERROR: Petsc Release Version 3.4.2, unknown<br>
[192]PETSC ERROR: See docs/changes/index.html for recent updates.<br>
[192]PETSC ERROR: See docs/faq.html for hints about trouble shooting.<br>
[192]PETSC ERROR: See docs/index.html for manual pages.<br>
[192]PETSC ERROR: ------------------------------<u></u>------------------------------<u></u>------------<br>
[192]PETSC ERROR: ./fsi3d on a Janus-nodebug-64bit named node0870 by ronglian Tue Oct 22 22:06:05 2013<br>
[192]PETSC ERROR: Libraries linked from /projects/ronglian/soft/petsc-<u></u>3.4.3/Janus-nodebug-64bit/lib<br>
[192]PETSC ERROR: Configure run at Thu Oct 17 01:29:46 2013<br>
[192]PETSC ERROR: Configure options --known-level1-dcache-size=<u></u>32768 --known-level1-dcache-<u></u>linesize=64 --known-level1-dcache-assoc=8 --known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8 --known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8 --known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8 --known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8 --known-sizeof-MPI_Fint=4 --known-mpi-long-double=1 --known-mpi-c-double-complex=0 --download-blacs=1 --download-f-blas-lapack=1 --download-metis=1 --download-parmetis=1 --download-scalapack=1 --download-superlu_dist=1 --known-mpi-shared-libraries=0 --with-64-bit-indices --with-batch=1 --with-debugging=0 --with-mpi-shared=1 PETSC_ARCH=Janus-nodebug-64bit --download-exodusii=1 --download-hdf5=1 --download-netcdf=1 --known-64-bit-blas-indices<br>
[192]PETSC ERROR: ------------------------------<u></u>------------------------------<u></u>------------<br>
[192]PETSC ERROR: [96]PETSC ERROR: [128]PETSC ERROR: [36]PETSC ERROR: [204]PETSC ERROR: ------------------------------<u></u>------------------------------<u></u>------------<br>
[204]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range<br>
[204]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger<br>
[204]PETSC ERROR: or see <a href="http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[204]PETSC" target="_blank">http://www.mcs.anl.gov/petsc/<u></u>documentation/faq.html#<u></u>valgrind[204]PETSC</a> ERROR: or try <a href="http://valgrind.org" target="_blank">http://valgrind.org</a> on GNU/linux and Apple Mac OS X to find memory corruption errors<br>
[204]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run<br>
[204]PETSC ERROR: to get more information on the crash.<br>
[204]PETSC ERROR: --------------------- Error Message ------------------------------<u></u>------<br>
[204]PETSC ERROR: Signal received!<br>
[204]PETSC ERROR: ------------------------------<u></u>------------------------------<u></u>------------<br>
[204]PETSC ERROR: Petsc Release Version 3.4.2, unknown<br>
[204]PETSC ERROR: See docs/changes/index.html for recent updates.<br>
[204]PETSC ERROR: See docs/faq.html for hints about trouble shooting.<br>
[204]PETSC ERROR: See docs/index.html for manual pages.<br>
[204]PETSC ERROR: [208]PETSC ERROR: [114]PETSC ERROR: ------------------------------<u></u>------------------------------<u></u>------------<br>
[114]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range<br>
[114]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger<br>
[114]PETSC ERROR: or see <a href="http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[114]PETSC" target="_blank">http://www.mcs.anl.gov/petsc/<u></u>documentation/faq.html#<u></u>valgrind[114]PETSC</a> ERROR: or try <a href="http://valgrind.org" target="_blank">http://valgrind.org</a> on GNU/linux and Apple Mac OS X to find memory corruption errors<br>
[114]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run<br>
[114]PETSC ERROR: to get more information on the crash.<br>
[114]PETSC ERROR: --------------------- Error Message ------------------------------<u></u>------<br>
[114]PETSC ERROR: Signal received!<br>
[114]PETSC ERROR: ------------------------------<u></u>------------------------------<u></u>------------<br>
[114]PETSC ERROR: Petsc Release Version 3.4.2, unknown<br>
[114]PETSC ERROR: See docs/changes/index.html for recent updates.<br>
[114]PETSC ERROR: See docs/faq.html for hints about trouble shooting.<br>
[114]PETSC ERROR: See docs/index.html for manual pages.<br>
[114]PETSC ERROR: ------------------------------<u></u>------------------------------<u></u>------------<br>
[114]PETSC ERROR: ./fsi3d on a Janus-nodebug-64bit named node0818 by ronglian Tue Oct 22 22:06:05 2013<br>
[114]PETSC ERROR: Libraries linked from /projects/ronglian/soft/petsc-<u></u>3.4.3/Janus-nodebug-64bit/lib<br>
[114]PETSC ERROR: Configure run at Thu Oct 17 01:29:46 2013<br>
[114]PETSC ERROR: Configure options --known-level1-dcache-size=<u></u>32768 --known-level1-dcache-<u></u>linesize=64 --known-level1-dcache-assoc=8 --known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8 --known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8 --known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8 --known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8 --known-sizeof-MPI_Fint=4 --known-mpi-long-double=1 --known-mpi-c-double-complex=0 --download-blacs=1 --download-f-blas-lapack=1 --download-metis=1 --download-parmetis=1 --download-scalapack=1 --download-superlu_dist=1 --known-mpi-shared-libraries=0 --with-64-bit-indices --with-batch=1 --with-debugging=0 --with-mpi-shared=1 PETSC_ARCH=Janus-nodebug-64bit --download-exodusii=1 --download-hdf5=1 --download-netcdf=1 --known-64-bit-blas-indices<br>
[114]PETSC ERROR: ------------------------------<u></u>------------------------------<u></u>------------<br>
[114]PETSC ERROR: User provided function() line 0 in unknown directory unknown file<br>
[164]PETSC ERROR: ------------------------------<u></u>------------------------------<u></u>------------<br>
[164]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range<br>
[164]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger<br>
[164]PETSC ERROR: or see <a href="http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[164]PETSC" target="_blank">http://www.mcs.anl.gov/petsc/<u></u>documentation/faq.html#<u></u>valgrind[164]PETSC</a> ERROR: or try <a href="http://valgrind.org" target="_blank">http://valgrind.org</a> on GNU/linux and Apple Mac OS X to find memory corruption errors<br>
[164]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run<br>
[164]PETSC ERROR: to get more information on the crash.<br>
[164]PETSC ERROR: --------------------- Error Message ------------------------------<u></u>------<br>
[164]PETSC ERROR: Signal received!<br>
[164]PETSC ERROR: ------------------------------<u></u>------------------------------<u></u>------------<br>
[164]PETSC ERROR: Petsc Release Version 3.4.2, unknown<br>
[164]PETSC ERROR: See docs/changes/index.html for recent updates.<br>
[164]PETSC ERROR: See docs/faq.html for hints about trouble shooting.<br>
[164]PETSC ERROR: See docs/index.html for manual pages.<br>
[164]PETSC ERROR: ------------------------------<u></u>------------------------------<u></u>------------<br>
[164]PETSC ERROR: ./fsi3d on a Janus-nodebug-64bit named node0845 by ronglian Tue Oct 22 22:06:05 2013<br>
[164]PETSC ERROR: Libraries linked from /projects/ronglian/soft/petsc-<u></u>3.4.3/Janus-nodebug-64bit/lib<br>
[164]PETSC ERROR: Configure run at Thu Oct 17 01:29:46 2013<br>
[164]PETSC ERROR: Configure options --known-level1-dcache-size=<u></u>32768 --known-level1-dcache-<u></u>linesize=64 --known-level1-dcache-assoc=8 --known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8 --known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8 --known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8 --known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8 --known-sizeof-MPI_Fint=4 --known-mpi-long-double=1 --known-mpi-c-double-complex=0 --download-blacs=1 --download-f-blas-lapack=1 --download-metis=1 --download-parmetis=1 --download-scalapack=1 --download-superlu_dist=1 --known-mpi-shared-libraries=0 --with-64-bit-indices --with-batch=1 --with-debugging=0 --with-mpi-shared=1 PETSC_ARCH=Janus-nodebug-64bit --download-exodusii=1 --download-hdf5=1 --download-netcdf=1 --known-64-bit-blas-indices<br>
[164]PETSC ERROR: ------------------------------<u></u>------------------------------<u></u>------------<br>
[164]PETSC ERROR: User provided function() line 0 in unknown directory unknown file<br>
[144]PETSC ERROR: ------------------------------<u></u>------------------------------<u></u>------------<br>
[144]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range<br>
[144]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger<br>
[144]PETSC ERROR: or see <a href="http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[144]PETSC" target="_blank">http://www.mcs.anl.gov/petsc/<u></u>documentation/faq.html#<u></u>valgrind[144]PETSC</a> ERROR: or try <a href="http://valgrind.org" target="_blank">http://valgrind.org</a> on GNU/linux and Apple Mac OS X to find memory corruption errors<br>
[144]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run<br>
[144]PETSC ERROR: to get more information on the crash.<br>
[144]PETSC ERROR: --------------------- Error Message ------------------------------<u></u>------<br>
[144]PETSC ERROR: Signal received!<br>
[144]PETSC ERROR: ------------------------------<u></u>------------------------------<u></u>------------<br>
[144]PETSC ERROR: Petsc Release Version 3.4.2, unknown<br>
[144]PETSC ERROR: See docs/changes/index.html for recent updates.<br>
[144]PETSC ERROR: [176]PETSC ERROR: ------------------------------<u></u>------------------------------<u></u>------------<br>
[176]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range<br>
[176]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger<br>
[176]PETSC ERROR: or see <a href="http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[176]PETSC" target="_blank">http://www.mcs.anl.gov/petsc/<u></u>documentation/faq.html#<u></u>valgrind[176]PETSC</a> ERROR: or try <a href="http://valgrind.org" target="_blank">http://valgrind.org</a> on GNU/linux and Apple Mac OS X to find memory corruption errors<br>
[176]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run<br>
[176]PETSC ERROR: to get more information on the crash.<br>
[176]PETSC ERROR: --------------------- Error Message ------------------------------<u></u>------<br>
[176]PETSC ERROR: Signal received!<br>
[176]PETSC ERROR: ------------------------------<u></u>------------------------------<u></u>------------<br>
[176]PETSC ERROR: Petsc Release Version 3.4.2, unknown<br>
[176]PETSC ERROR: See docs/changes/index.html for recent updates.<br>
[176]PETSC ERROR: See docs/faq.html for hints about trouble shooting.<br>
[176]PETSC ERROR: See docs/index.html for manual pages.<br>
[176]PETSC ERROR: ------------------------------<u></u>------------------------------<u></u>------------<br>
[176]PETSC ERROR: ./fsi3d on a Janus-nodebug-64bit named node0856 by ronglian Tue Oct 22 22:06:05 2013<br>
[176]PETSC ERROR: Libraries linked from /projects/ronglian/soft/petsc-<u></u>3.4.3/Janus-nodebug-64bit/lib<br>
[176]PETSC ERROR: Configure run at Thu Oct 17 01:29:46 2013<br>
[176]PETSC ERROR: Configure options --known-level1-dcache-size=<u></u>32768 --known-level1-dcache-<u></u>linesize=64 --known-level1-dcache-assoc=8 --known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8 --known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8 --known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8 --known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8 --known-sizeof-MPI_Fint=4 --known-mpi-long-double=1 --known-mpi-c-double-complex=0 --download-blacs=1 --download-f-blas-lapack=1 --download-metis=1 --download-parmetis=1 --download-scalapack=1 --download-superlu_dist=1 --known-mpi-shared-libraries=0 --with-64-bit-indices --with-batch=1 --with-debugging=0 --with-mpi-shared=1 PETSC_ARCH=Janus-nodebug-64bit --download-exodusii=1 --download-hdf5=1 --download-netcdf=1 --known-64-bit-blas-indices<br>
[176]PETSC ERROR: ------------------------------<u></u>------------------------------<u></u>------------<br>
[176]PETSC ERROR: User provided function() line 0 in unknown directory unknown file<br>
[82]PETSC ERROR: ------------------------------<u></u>------------------------------<u></u>------------<br>
[82]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range<br>
[82]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger<br>
[82]PETSC ERROR: or see <a href="http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[82]PETSC" target="_blank">http://www.mcs.anl.gov/petsc/<u></u>documentation/faq.html#<u></u>valgrind[82]PETSC</a> ERROR: or try <a href="http://valgrind.org" target="_blank">http://valgrind.org</a> on GNU/linux and Apple Mac OS X to find memory corruption errors<br>
[82]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run<br>
[82]PETSC ERROR: to get more information on the crash.<br>
[82]PETSC ERROR: --------------------- Error Message ------------------------------<u></u>------<br>
[82]PETSC ERROR: Signal received!<br>
[82]PETSC ERROR: ------------------------------<u></u>------------------------------<u></u>------------<br>
[82]PETSC ERROR: Petsc Release Version 3.4.2, unknown<br>
[82]PETSC ERROR: See docs/changes/index.html for recent updates.<br>
[82]PETSC ERROR: See docs/faq.html for hints about trouble shooting.<br>
[82]PETSC ERROR: See docs/index.html for manual pages.<br>
[82]PETSC ERROR: ------------------------------<u></u>------------------------------<u></u>------------<br>
[82]PETSC ERROR: ./fsi3d on a Janus-nodebug-64bit named node0811 by ronglian Tue Oct 22 22:06:05 2013<br>
[82]PETSC ERROR: Libraries linked from /projects/ronglian/soft/petsc-<u></u>3.4.3/Janus-nodebug-64bit/lib<br>
[82]PETSC ERROR: Configure run at Thu Oct 17 01:29:46 2013<br>
[82]PETSC ERROR: Configure options --known-level1-dcache-size=<u></u>32768 --known-level1-dcache-<u></u>linesize=64 --known-level1-dcache-assoc=8 --known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8 --known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8 --known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8 --known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8 --known-sizeof-MPI_Fint=4 --known-mpi-long-double=1 --known-mpi-c-double-complex=0 --download-blacs=1 --download-f-blas-lapack=1 --download-metis=1 --download-parmetis=1 --download-scalapack=1 --download-superlu_dist=1 --known-mpi-shared-libraries=0 --with-64-bit-indices --with-batch=1 --with-debugging=0 --with-mpi-shared=1 PETSC_ARCH=Janus-nodebug-64bit --download-exodusii=1 --download-hdf5=1 --download-netcdf=1 --known-64-bit-blas-indices<br>
[82]PETSC ERROR: ------------------------------<u></u>------------------------------<u></u>------------<br>
[82]PETSC ERROR: User provided function() line 0 in unknown directory unknown file<br>
[32]PETSC ERROR: ------------------------------<u></u>------------------------------<u></u>------------<br>
[32]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range<br>
[32]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger<br>
[32]PETSC ERROR: or see <a href="http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[32]PETSC" target="_blank">http://www.mcs.anl.gov/petsc/<u></u>documentation/faq.html#<u></u>valgrind[32]PETSC</a> ERROR: or try <a href="http://valgrind.org" target="_blank">http://valgrind.org</a> on GNU/linux and Apple Mac OS X to find memory corruption errors<br>
[32]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run<br>
[32]PETSC ERROR: to get more information on the crash.<br>
[32]PETSC ERROR: --------------------- Error Message ------------------------------<u></u>------<br>
[32]PETSC ERROR: Signal received!<br>
[32]PETSC ERROR: ------------------------------<u></u>------------------------------<u></u>------------<br>
[32]PETSC ERROR: Petsc Release Version 3.4.2, unknown<br>
[32]PETSC ERROR: See docs/changes/index.html for recent updates.<br>
[32]PETSC ERROR: See docs/faq.html for hints about trouble shooting.<br>
[32]PETSC ERROR: See docs/index.html for manual pages.<br>
[32]PETSC ERROR: ------------------------------<u></u>------------------------------<u></u>------------<br>
[32]PETSC ERROR: ./fsi3d on a Janus-nodebug-64bit named node0737 by ronglian Tue Oct 22 22:06:04 2013<br>
[32]PETSC ERROR: Libraries linked from /projects/ronglian/soft/petsc-<u></u>3.4.3/Janus-nodebug-64bit/lib<br>
[32]PETSC ERROR: Configure run at Thu Oct 17 01:29:46 2013<br>
[32]PETSC ERROR: Configure options --known-level1-dcache-size=<u></u>32768 --known-level1-dcache-<u></u>linesize=64 --known-level1-dcache-assoc=8 --known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8 --known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8 --known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8 --known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8 --known-sizeof-MPI_Fint=4 --known-mpi-long-double=1 --known-mpi-c-double-complex=0 --download-blacs=1 --download-f-blas-lapack=1 --download-metis=1 --download-parmetis=1 --download-scalapack=1 --download-superlu_dist=1 --known-mpi-shared-libraries=0 --with-64-bit-indices --with-batch=1 --with-debugging=0 --with-mpi-shared=1 PETSC_ARCH=Janus-nodebug-64bit --download-exodusii=1 --download-hdf5=1 --download-netcdf=1 --known-64-bit-blas-indices<br>
[32]PETSC ERROR: ------------------------------<u></u>------------------------------<u></u>------------<br>
[32]PETSC ERROR: User provided function() line 0 in unknown directory unknown file<br>
[72]PETSC ERROR: [220]PETSC ERROR: ------------------------------<u></u>------------------------------<u></u>------------<br>
[220]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range<br>
[220]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger<br>
[220]PETSC ERROR: or see <a href="http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[220]PETSC" target="_blank">http://www.mcs.anl.gov/petsc/<u></u>documentation/faq.html#<u></u>valgrind[220]PETSC</a> ERROR: or try <a href="http://valgrind.org" target="_blank">http://valgrind.org</a> on GNU/linux and Apple Mac OS X to find memory corruption errors<br>
[220]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run<br>
[220]PETSC ERROR: to get more information on the crash.<br>
[220]PETSC ERROR: --------------------- Error Message ------------------------------<u></u>------<br>
[220]PETSC ERROR: Signal received!<br>
[220]PETSC ERROR: ------------------------------<u></u>------------------------------<u></u>------------<br>
[220]PETSC ERROR: Petsc Release Version 3.4.2, unknown<br>
[220]PETSC ERROR: See docs/changes/index.html for recent updates.<br>
[220]PETSC ERROR: See docs/faq.html for hints about trouble shooting.<br>
[220]PETSC ERROR: See docs/index.html for manual pages.<br>
[220]PETSC ERROR: ------------------------------<u></u>------------------------------<u></u>------------<br>
[220]PETSC ERROR: ./fsi3d on a Janus-nodebug-64bit named node0880 by ronglian Tue Oct 22 22:06:05 2013<br>
[220]PETSC ERROR: Libraries linked from /projects/ronglian/soft/petsc-<u></u>3.4.3/Janus-nodebug-64bit/lib<br>
[220]PETSC ERROR: Configure run at Thu Oct 17 01:29:46 2013<br>
[220]PETSC ERROR: Configure options --known-level1-dcache-size=<u></u>32768 --known-level1-dcache-<u></u>linesize=64 --known-level1-dcache-assoc=8 --known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8 --known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8 --known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8 --known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8 --known-sizeof-MPI_Fint=4 --known-mpi-long-double=1 --known-mpi-c-double-complex=0 --download-blacs=1 --download-f-blas-lapack=1 --download-metis=1 --download-parmetis=1 --download-scalapack=1 --download-superlu_dist=1 --known-mpi-shared-libraries=0 --with-64-bit-indices --with-batch=1 --with-debugging=0 --with-mpi-shared=1 PETSC_ARCH=Janus-nodebug-64bit --download-exodusii=1 --download-hdf5=1 --download-netcdf=1 --known-64-bit-blas-indices<br>
[220]PETSC ERROR: ------------------------------<u></u>------------------------------<u></u>------------<br>
[220]PETSC ERROR: User provided function() line 0 in unknown directory unknown file<br>
[178]PETSC ERROR: [68]PETSC ERROR: ------------------------------<u></u>------------------------------<u></u>------------<br>
[68]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range<br>
[68]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger<br>
[68]PETSC ERROR: or see <a href="http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[68]PETSC" target="_blank">http://www.mcs.anl.gov/petsc/<u></u>documentation/faq.html#<u></u>valgrind[68]PETSC</a> ERROR: or try <a href="http://valgrind.org" target="_blank">http://valgrind.org</a> on GNU/linux and Apple Mac OS X to find memory corruption errors<br>
[68]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run<br>
[68]PETSC ERROR: to get more information on the crash.<br>
[68]PETSC ERROR: --------------------- Error Message ------------------------------<u></u>------<br>
[68]PETSC ERROR: Signal received!<br>
[68]PETSC ERROR: ------------------------------<u></u>------------------------------<u></u>------------<br>
[68]PETSC ERROR: Petsc Release Version 3.4.2, unknown<br>
[68]PETSC ERROR: See docs/changes/index.html for recent updates.<br>
[68]PETSC ERROR: See docs/faq.html for hints about trouble shooting.<br>
[68]PETSC ERROR: See docs/index.html for manual pages.<br>
[68]PETSC ERROR: ------------------------------<u></u>------------------------------<u></u>------------<br>
[68]PETSC ERROR: ./fsi3d on a Janus-nodebug-64bit named node0810 by ronglian Tue Oct 22 22:06:05 2013<br>
[68]PETSC ERROR: Libraries linked from /projects/ronglian/soft/petsc-<u></u>3.4.3/Janus-nodebug-64bit/lib<br>
[68]PETSC ERROR: Configure run at Thu Oct 17 01:29:46 2013<br>
[68]PETSC ERROR: Configure options --known-level1-dcache-size=<u></u>32768 --known-level1-dcache-<u></u>linesize=64 --known-level1-dcache-assoc=8 --known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8 --known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8 --known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8 --known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8 --known-sizeof-MPI_Fint=4 --known-mpi-long-double=1 --known-mpi-c-double-complex=0 --download-blacs=1 --download-f-blas-lapack=1 --download-metis=1 --download-parmetis=1 --download-scalapack=1 --download-superlu_dist=1 --known-mpi-shared-libraries=0 --with-64-bit-indices --with-batch=1 --with-debugging=0 --with-mpi-shared=1 PETSC_ARCH=Janus-nodebug-64bit --download-exodusii=1 --download-hdf5=1 --download-netcdf=1 --known-64-bit-blas-indices<br>
[68]PETSC ERROR: ------------------------------<u></u>------------------------------<u></u>------------<br>
[68]PETSC ERROR: User provided function() line 0 in unknown directory unknown file<br>
[88]PETSC ERROR: ------------------------------<u></u>------------------------------<u></u>------------<br>
[88]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range<br>
[88]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger<br>
[88]PETSC ERROR: or see <a href="http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[88]PETSC" target="_blank">http://www.mcs.anl.gov/petsc/<u></u>documentation/faq.html#<u></u>valgrind[88]PETSC</a> ERROR: or try <a href="http://valgrind.org" target="_blank">http://valgrind.org</a> on GNU/linux and Apple Mac OS X to find memory corruption errors<br>
[88]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run<br>
[88]PETSC ERROR: to get more information on the crash.<br>
[88]PETSC ERROR: --------------------- Error Message ------------------------------<u></u>------<br>
[88]PETSC ERROR: Signal received!<br>
[88]PETSC ERROR: ------------------------------<u></u>------------------------------<u></u>------------<br>
[88]PETSC ERROR: Petsc Release Version 3.4.2, unknown<br>
[88]PETSC ERROR: See docs/changes/index.html for recent updates.<br>
[88]PETSC ERROR: See docs/faq.html for hints about trouble shooting.<br>
[88]PETSC ERROR: See docs/index.html for manual pages.<br>
[88]PETSC ERROR: ------------------------------<u></u>------------------------------<u></u>------------<br>
[88]PETSC ERROR: ./fsi3d on a Janus-nodebug-64bit named node0814 by ronglian Tue Oct 22 22:06:05 2013<br>
[88]PETSC ERROR: Libraries linked from /projects/ronglian/soft/petsc-<u></u>3.4.3/Janus-nodebug-64bit/lib<br>
[88]PETSC ERROR: Configure run at Thu Oct 17 01:29:46 2013<br>
[88]PETSC ERROR: Configure options --known-level1-dcache-size=<u></u>32768 --known-level1-dcache-<u></u>linesize=64 --known-level1-dcache-assoc=8 --known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8 --known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8 --known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8 --known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8 --known-sizeof-MPI_Fint=4 --known-mpi-long-double=1 --known-mpi-c-double-complex=0 --download-blacs=1 --download-f-blas-lapack=1 --download-metis=1 --download-parmetis=1 --download-scalapack=1 --download-superlu_dist=1 --known-mpi-shared-libraries=0 --with-64-bit-indices --with-batch=1 --with-debugging=0 --with-mpi-shared=1 PETSC_ARCH=Janus-nodebug-64bit --download-exodusii=1 --download-hdf5=1 --download-netcdf=1 --known-64-bit-blas-indices<br>
[88]PETSC ERROR: ------------------------------<u></u>------------------------------<u></u>------------<br>
[88]PETSC ERROR: User provided function() line 0 in unknown directory unknown file<br>
[196]PETSC ERROR: ------------------------------<u></u>------------------------------<u></u>------------<br>
[196]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range<br>
[196]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger<br>
[196]PETSC ERROR: or see <a href="http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[196]PETSC" target="_blank">http://www.mcs.anl.gov/petsc/<u></u>documentation/faq.html#<u></u>valgrind[196]PETSC</a> ERROR: or try <a href="http://valgrind.org" target="_blank">http://valgrind.org</a> on GNU/linux and Apple Mac OS X to find memory corruption errors<br>
[196]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run<br>
[196]PETSC ERROR: to get more information on the crash.<br>
[196]PETSC ERROR: --------------------- Error Message ------------------------------<u></u>------<br>
[196]PETSC ERROR: Signal received!<br>
[196]PETSC ERROR: ------------------------------<u></u>------------------------------<u></u>------------<br>
[196]PETSC ERROR: Petsc Release Version 3.4.2, unknown<br>
[196]PETSC ERROR: See docs/changes/index.html for recent updates.<br>
[196]PETSC ERROR: See docs/faq.html for hints about trouble shooting.<br>
[196]PETSC ERROR: See docs/index.html for manual pages.<br>
[196]PETSC ERROR: ------------------------------<u></u>------------------------------<u></u>------------<br>
[196]PETSC ERROR: ./fsi3d on a Janus-nodebug-64bit named node0870 by ronglian Tue Oct 22 22:06:05 2013<br>
[196]PETSC ERROR: Libraries linked from /projects/ronglian/soft/petsc-<u></u>3.4.3/Janus-nodebug-64bit/lib<br>
[196]PETSC ERROR: Configure run at Thu Oct 17 01:29:46 2013<br>
[196]PETSC ERROR: Configure options --known-level1-dcache-size=<u></u>32768 --known-level1-dcache-<u></u>linesize=64 --known-level1-dcache-assoc=8 --known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8 --known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8 --known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8 --known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8 --known-sizeof-MPI_Fint=4 --known-mpi-long-double=1 --known-mpi-c-double-complex=0 --download-blacs=1 --download-f-blas-lapack=1 --download-metis=1 --download-parmetis=1 --download-scalapack=1 --download-superlu_dist=1 --known-mpi-shared-libraries=0 --with-64-bit-indices --with-batch=1 --with-debugging=0 --with-mpi-shared=1 PETSC_ARCH=Janus-nodebug-64bit --download-exodusii=1 --download-hdf5=1 --download-netcdf=1 --known-64-bit-blas-indices<br>
[196]PETSC ERROR: ------------------------------<u></u>------------------------------<u></u>------------<br>
[196]PETSC ERROR: User provided function() line 0 in unknown directory unknown file<br>
[180]PETSC ERROR: ------------------------------<u></u>------------------------------<u></u>------------<br>
[180]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range<br>
[180]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger<br>
[180]PETSC ERROR: or see <a href="http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[180]PETSC" target="_blank">http://www.mcs.anl.gov/petsc/<u></u>documentation/faq.html#<u></u>valgrind[180]PETSC</a> ERROR: or try <a href="http://valgrind.org" target="_blank">http://valgrind.org</a> on GNU/linux and Apple Mac OS X to find memory corruption errors<br>
[180]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run<br>
[180]PETSC ERROR: to get more information on the crash.<br>
[180]PETSC ERROR: --------------------- Error Message ------------------------------<u></u>------<br>
[180]PETSC ERROR: Signal received!<br>
</blockquote></div><br><br clear="all"><div><br></div>-- <br>What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead.<br>
-- Norbert Wiener
</div></div>