[petsc-users] Fwd: PETSc installation on Intrepid
Jitendra Kumar
jitendra.ornl at gmail.com
Tue Jul 16 10:48:54 CDT 2013
I ran into following errors while trying to build PETSc-dev on Intrepid
@ALCF. (configure.log attached)
*******************************************************************************
UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for
details):
-------------------------------------------------------------------------------
Cannot run executable to determine size of char. If this machine uses a
batch system
to submit jobs you will need to configure using ./configure with the
additional option --with-batch.
Otherwise there is problem with the compilers. Can you compile and run
code with your C/C++ (and maybe Fortran) compilers?
*******************************************************************************
File "/gpfs/home/jkumar/lib/petsc/config/configure.py", line 293, in
petsc_configure
framework.configure(out = sys.stdout)
File
"/gpfs/home/jkumar/lib/petsc/config/BuildSystem/config/framework.py", line
933, in configure
child.configure()
File "/gpfs/home/jkumar/lib/petsc/config/BuildSystem/config/types.py",
line 386, in configure
map(lambda type: self.executeTest(self.checkSizeof, type),
['char','void *', 'short', 'int', 'long', 'long long', 'float', 'double',
'size_t'])
File "/gpfs/home/jkumar/lib/petsc/config/BuildSystem/config/types.py",
line 386, in <lambda>
map(lambda type: self.executeTest(self.checkSizeof, type),
['char','void *', 'short', 'int', 'long', 'long long', 'float', 'double',
'size_t'])
File "/gpfs/home/jkumar/lib/petsc/config/BuildSystem/config/base.py",
line 115, in executeTest
ret = apply(test, args,kargs)
File "/gpfs/home/jkumar/lib/petsc/config/BuildSystem/config/types.py",
line 296, in checkSizeof
raise RuntimeError(msg)
This is what my configuration looks like (adapted from
config/examples/arch-bgp-ibm-opt.py)
configure_options = [
'--with-cc=mpixlc',
'--with-fc=mpixlf90',
'--with-cxx=mpixlcxx',
'COPTFLAGS=-O3',
'FOPTFLAGS=-O3',
'--with-debugging=0',
'--with-cmake=/soft/apps/fen/cmake-2.8.3/bin/cmake',
# '--with-hdf5=/soft/apps/hdf5-1.8.0',
'--download-parmetis=1',
'--download-metis=1',
'--download-plapack=1',
'--download-hdf5=1'
]
I would appreciate any help building the llbrary there.
Thanks,
Jitu
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