[petsc-users] Petsc crashes with intel compiler
Tabrez Ali
stali at geology.wisc.edu
Fri Aug 31 20:16:41 CDT 2012
You can try the configure flags used by PETSc (3.2) that is
pre-installed on Lonestar (configured with Hypre, MKL, Intel MPI etc.).
$ module load petsc
and then try any of the PETSc examples with bcgs hypre/none
On 08/31/2012 07:46 PM, Mohammad Mirzadeh wrote:
> Alright, just removed pthreadclasses and it did not help. The code
> still crashes.
>
> Matt, I'm gonna try MKL now; However, don't you think its strange that
> the gcc version works even when I use MKL?
>
> On Fri, Aug 31, 2012 at 5:12 PM, Matthew Knepley <knepley at gmail.com
> <mailto:knepley at gmail.com>> wrote:
>
> On Fri, Aug 31, 2012 at 6:51 PM, Jed Brown <jedbrown at mcs.anl.gov
> <mailto:jedbrown at mcs.anl.gov>> wrote:
>
> Can you remove pthreadclasses from your configure? If the
> problem is still there, it looks a bit like a misconfigured
> MPI. But get rid of the pthreadclasses first.
>
>
> After that, I would get rid of MKL in favor of
> --download-f-blas-lapack. My guess is that MKL is doing something
> crazy in the compiler.
>
> Matt
>
> On Fri, Aug 31, 2012 at 6:38 PM, Mohammad Mirzadeh
> <mirzadeh at gmail.com <mailto:mirzadeh at gmail.com>> wrote:
>
> hi guys,
>
> After doing many many tests across different machine
> (Linux box and a Mac) and clusters (Gordon and Lonestar)
> I'm able to reproduce a test in which my code crashes if I
> use a petsc version that is compiled with intel compiler.
> This does not happen if I use gcc. When I use BiCGSTAB
> solver along with hypre's BoomerAMG, I get the following
> error message:
>
> [0]PETSC ERROR: --------------------- Error Message
> ------------------------------------
> [0]PETSC ERROR: Error in external library!
> [0]PETSC ERROR: Error in HYPRE solver, error code 1!
> [0]PETSC ERROR:
> ------------------------------------------------------------------------
> [0]PETSC ERROR: Petsc Release Version 3.3.0, Patch 2, Fri
> Jul 13 15:42:00 CDT 2012
> [0]PETSC ERROR: See docs/changes/index.html for recent
> updates.
> [0]PETSC ERROR: See docs/faq.html for hints about trouble
> shooting.
> [0]PETSC ERROR: See docs/index.html for manual pages.
> [0]PETSC ERROR:
> ------------------------------------------------------------------------
> [0]PETSC ERROR: ./2D_cylinders on a arch-linu named
> c341-116.ls4.tacc.utexas.edu
> <http://c341-116.ls4.tacc.utexas.edu> by mmirzade Fri Aug
> 31 18:13:15 2012
> [0]PETSC ERROR: Libraries linked from
> /work/02032/mmirzade/soft/petsc-3.3-p2/arch-linux-intel-debug/lib
> [0]PETSC ERROR: Configure run at Fri Aug 31 17:22:42 2012
> [0]PETSC ERROR: Configure options
> PETSC_ARCH=arch-linux-intel-debug --with-clanguage=cxx
> --with-pthreadclasses=1
> --with-mpi-dir=/opt/apps/intel11_1/mvapich2/1.6
> --with-blas-lapack-dir=/opt/apps/intel/11.1/mkl
> --download-hypre=1 --download-hdf5=1 --download-metis=1
> --download-parmetis=1 --download-superlu_dist=1
> [0]PETSC ERROR:
> ------------------------------------------------------------------------
> [0]PETSC ERROR: PCApply_HYPRE() line 160 in
> src/ksp/pc/impls/hypre/hypre.c
> [0]PETSC ERROR: PCApply() line 384 in
> src/ksp/pc/interface/precon.c
> [0]PETSC ERROR: KSPInitialResidual() line 57 in
> src/ksp/ksp/interface/itres.c
> [0]PETSC ERROR: KSPSolve_BCGS() line 65 in
> src/ksp/ksp/impls/bcgs/bcgs.c
> [0]PETSC ERROR: KSPSolve() line 446 in
> src/ksp/ksp/interface/itfunc.c
> [0]PETSC ERROR: solve() line 402 in
> "unknowndirectory/"/work/02032/mmirzade/codes/CASL/lib/algebra/petscLinearSolver.cpp
> [0]PETSC ERROR: --------------------- Error Message
> ------------------------------------
> [0]PETSC ERROR: Error in external library!
> [0]PETSC ERROR: Error in HYPRE_IJMatrixDestroy()!
> [0]PETSC ERROR:
> ------------------------------------------------------------------------
> [0]PETSC ERROR: Petsc Release Version 3.3.0, Patch 2, Fri
> Jul 13 15:42:00 CDT 2012
> [0]PETSC ERROR: See docs/changes/index.html for recent
> updates.
> [0]PETSC ERROR: See docs/faq.html for hints about trouble
> shooting.
> [0]PETSC ERROR: See docs/index.html for manual pages.
> [0]PETSC ERROR:
> ------------------------------------------------------------------------
> [0]PETSC ERROR: ./2D_cylinders on a arch-linu named
> c341-116.ls4.tacc.utexas.edu
> <http://c341-116.ls4.tacc.utexas.edu> by mmirzade Fri Aug
> 31 18:13:15 2012
> [0]PETSC ERROR: Libraries linked from
> /work/02032/mmirzade/soft/petsc-3.3-p2/arch-linux-intel-debug/lib
> [0]PETSC ERROR: Configure run at Fri Aug 31 17:22:42 2012
> [0]PETSC ERROR: Configure options
> PETSC_ARCH=arch-linux-intel-debug --with-clanguage=cxx
> --with-pthreadclasses=1
> --with-mpi-dir=/opt/apps/intel11_1/mvapich2/1.6
> --with-blas-lapack-dir=/opt/apps/intel/11.1/mkl
> --download-hypre=1 --download-hdf5=1 --download-metis=1
> --download-parmetis=1 --download-superlu_dist=1
> [0]PETSC ERROR:
> ------------------------------------------------------------------------
> [0]PETSC ERROR: PCDestroy_HYPRE() line 178 in
> src/ksp/pc/impls/hypre/hypre.c
> [0]PETSC ERROR: PCDestroy() line 119 in
> src/ksp/pc/interface/precon.c
> [0]PETSC ERROR: KSPDestroy() line 786 in
> src/ksp/ksp/interface/itfunc.c
> [0]PETSC ERROR: clear() line 438 in
> "unknowndirectory/"/work/02032/mmirzade/codes/CASL/lib/algebra/petscLinearSolver.cpp
> [0]PETSC ERROR:
> ------------------------------------------------------------------------
> [0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation
> Violation, probably memory access out of range
> [0]PETSC ERROR: Try option -start_in_debugger or
> -on_error_attach_debugger
> [0]PETSC ERROR: or see
> http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[0]PETSC
> ERROR: or try http://valgrind.org on GNU/linux and Apple
> Mac OS X to find memory corruption errors
> [0]PETSC ERROR: likely location of problem given in stack
> below
> [0]PETSC ERROR: --------------------- Stack Frames
> ------------------------------------
> [0]PETSC ERROR: Note: The EXACT line numbers in the stack
> are not available,
> [0]PETSC ERROR: INSTEAD the line number of the start
> of the function
> [0]PETSC ERROR: is given.
> [0]PETSC ERROR: [0] VecDestroy line 574
> src/vec/vec/interface/vector.c
> [0]PETSC ERROR: [0] KSPReset_BCGS line 194
> src/ksp/ksp/impls/bcgs/bcgs.c
> [0]PETSC ERROR: [0] KSPReset line 729
> src/ksp/ksp/interface/itfunc.c
> [0]PETSC ERROR: [0] KSPDestroy line 768
> src/ksp/ksp/interface/itfunc.c
> [0]PETSC ERROR: [0] PetscError line 343 src/sys/error/err.c
> [0]PETSC ERROR: [0] HYPRE_IJMatrixDestroy line 0
> unknownunknown
> [0]PETSC ERROR: [0] PCDestroy_HYPRE line 177
> src/ksp/pc/impls/hypre/hypre.c
> [0]PETSC ERROR: [0] PCDestroy line 110
> src/ksp/pc/interface/precon.c
> [0]PETSC ERROR: [0] KSPDestroy line 768
> src/ksp/ksp/interface/itfunc.c
> [0]PETSC ERROR: [0] PetscError line 343 src/sys/error/err.c
> [0]PETSC ERROR: [0] PCApply_HYPRE line 149
> src/ksp/pc/impls/hypre/hypre.c
> [0]PETSC ERROR: [0] PCApply line 373
> src/ksp/pc/interface/precon.c
> [0]PETSC ERROR: [0] KSPInitialResidual line 45
> src/ksp/ksp/interface/itres.c
> [0]PETSC ERROR: [0] KSPSolve_BCGS line 54
> src/ksp/ksp/impls/bcgs/bcgs.c
> [0]PETSC ERROR: [0] KSPSolve line 351
> src/ksp/ksp/interface/itfunc.c
> [0]PETSC ERROR: --------------------- Error Message
> ------------------------------------
> [0]PETSC ERROR: Signal received!
> [0]PETSC ERROR:
> ------------------------------------------------------------------------
> [0]PETSC ERROR: Petsc Release Version 3.3.0, Patch 2, Fri
> Jul 13 15:42:00 CDT 2012
> [0]PETSC ERROR: See docs/changes/index.html for recent
> updates.
> [0]PETSC ERROR: See docs/faq.html for hints about trouble
> shooting.
> [0]PETSC ERROR: See docs/index.html for manual pages.
> [0]PETSC ERROR:
> ------------------------------------------------------------------------
> [0]PETSC ERROR: ./2D_cylinders on a arch-linu named
> c341-116.ls4.tacc.utexas.edu
> <http://c341-116.ls4.tacc.utexas.edu> by mmirzade Fri Aug
> 31 18:13:15 2012
> [0]PETSC ERROR: Libraries linked from
> /work/02032/mmirzade/soft/petsc-3.3-p2/arch-linux-intel-debug/lib
> [0]PETSC ERROR: Configure run at Fri Aug 31 17:22:42 2012
> [0]PETSC ERROR: Configure options
> PETSC_ARCH=arch-linux-intel-debug --with-clanguage=cxx
> --with-pthreadclasses=1
> --with-mpi-dir=/opt/apps/intel11_1/mvapich2/1.6
> --with-blas-lapack-dir=/opt/apps/intel/11.1/mkl
> --download-hypre=1 --download-hdf5=1 --download-metis=1
> --download-parmetis=1 --download-superlu_dist=1
> [0]PETSC ERROR:
> ------------------------------------------------------------------------
> [0]PETSC ERROR: User provided function() line 0 in unknown
> directory unknown file
> application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0
>
>
> Initially I thought this is somehow related to hypre, but
> even when I run the code with -pc_type none I get:
>
> [0]PETSC ERROR: --------------------- Error Message
> ------------------------------------
> [0]PETSC ERROR: Floating point exception!
> [0]PETSC ERROR: Infinite or not-a-number generated in norm!
> [0]PETSC ERROR:
> ------------------------------------------------------------------------
> [0]PETSC ERROR: Petsc Release Version 3.3.0, Patch 2, Fri
> Jul 13 15:42:00 CDT 2012
> [0]PETSC ERROR: See docs/changes/index.html for recent
> updates.
> [0]PETSC ERROR: See docs/faq.html for hints about trouble
> shooting.
> [0]PETSC ERROR: See docs/index.html for manual pages.
> [0]PETSC ERROR:
> ------------------------------------------------------------------------
> [0]PETSC ERROR: ./2D_cylinders on a arch-linu named
> c341-116.ls4.tacc.utexas.edu
> <http://c341-116.ls4.tacc.utexas.edu> by mmirzade Fri Aug
> 31 18:15:04 2012
> [0]PETSC ERROR: Libraries linked from
> /work/02032/mmirzade/soft/petsc-3.3-p2/arch-linux-intel-debug/lib
> [0]PETSC ERROR: Configure run at Fri Aug 31 17:22:42 2012
> [0]PETSC ERROR: Configure options
> PETSC_ARCH=arch-linux-intel-debug --with-clanguage=cxx
> --with-pthreadclasses=1
> --with-mpi-dir=/opt/apps/intel11_1/mvapich2/1.6
> --with-blas-lapack-dir=/opt/apps/intel/11.1/mkl
> --download-hypre=1 --download-hdf5=1 --download-metis=1
> --download-parmetis=1 --download-superlu_dist=1
> [0]PETSC ERROR:
> ------------------------------------------------------------------------
> [0]PETSC ERROR: VecNorm() line 169 in
> src/vec/vec/interface/rvector.c
> [0]PETSC ERROR: KSPSolve_BCGS() line 78 in
> src/ksp/ksp/impls/bcgs/bcgs.c
> [0]PETSC ERROR: KSPSolve() line 446 in
> src/ksp/ksp/interface/itfunc.c
> [0]PETSC ERROR: solve() line 402 in
> "unknowndirectory/"/work/02032/mmirzade/codes/CASL/lib/algebra/petscLinearSolver.cpp
> N5PETSc9ExceptionE
>
>
> In both cases the solution to the linear system diverges.
> None of these issues happen when I build petsc with gcc.
>
> Couple of points:
>
> 1) The gcc version is clean under valgrind (except the
> usual PetscInitialize errors ...) but the intel versions
> generates all sort of errors in valgrind. Please see blow
> (this is during one Poisson solve)
> 2) This is my petsc configure option:
>
> /configure PETSC_ARCH=arch-linux-gcc-debug
> --with-clanguage=cxx --with-pthreadclasses=1
> --with-mpi-dir=$MPICH_HOME
> --with-blas-lapack-dir=$TACC_MKL_DIR --download-hypre=1
> --download-hdf5=1 --download-metis=1 --download-parmetis=1
> --download-superlu_dist=1
>
> ./configure PETSC_ARCH=arch-linux-intel-debug
> --with-clanguage=cxx --with-pthreadclasses=1
> --with-mpi-dir=$MPICH_HOME
> --with-blas-lapack-dir=$TACC_MKL_DIR --download-hypre=1
> --download-hdf5=1 --download-metis=1 --download-parmetis=1
> --download-superlu_dist=1
>
>
> in both cases $TACC_MKL_DIR points to a mkl library
> compiled using intel compiler. I don't think if that has
> to do with any of this (looking at valgrind output) but
> then again that's the only version of mkl available on the
> cluster (Lonestar).
>
> Do you think this is somehow a compiler bug(?) or
> something more like an undefined behavior in my own code?
>
> ==8404== Conditional jump or move depends on uninitialised
> value(s)
> ==8404== at 0x74B236A: calloc (mvapich_malloc.c:3756)
> ==8404== by 0x747D79D: MPIU_Handle_obj_alloc_unsafe
> (handlemem.c:363)
> ==8404== by 0x747D665: MPIU_Handle_obj_alloc
> (handlemem.c:307)
> ==8404== by 0x744F596: MPIR_Comm_create (commutil.c:101)
> ==8404== by 0x744E84D: MPIR_Comm_copy (commutil.c:969)
> ==8404== by 0x7447F14: PMPI_Comm_dup (comm_dup.c:177)
> ==8404== by 0xB2292A: PCCreate_HYPRE (hypre.c:1018)
> ==8404== by 0xA64120: PCSetType(_p_PC*, char const*)
> (pcset.c:83)
> ==8404== by 0x46B3FE:
> PetscLinearSolver::setupSolver(MatStructure, char const*,
> char const*) (petscLinearSolver.cpp:331)
> ==8404== by 0x46E7D1:
> amr2D::fvm::pnpSolver::initialize() (pnpSolver_2d_FVM.cpp:46)
> ==8404== by 0x40D464: main (main_2D_cylinders.cpp:299)
> ==8404==
> ==8404== Conditional jump or move depends on uninitialised
> value(s)
> ==8404== at 0x74B21CD: calloc (mvapich_malloc.c:3825)
> ==8404== by 0x747D79D: MPIU_Handle_obj_alloc_unsafe
> (handlemem.c:363)
> ==8404== by 0x747D665: MPIU_Handle_obj_alloc
> (handlemem.c:307)
> ==8404== by 0x744F596: MPIR_Comm_create (commutil.c:101)
> ==8404== by 0x744E84D: MPIR_Comm_copy (commutil.c:969)
> ==8404== by 0x7447F14: PMPI_Comm_dup (comm_dup.c:177)
> ==8404== by 0xB2292A: PCCreate_HYPRE (hypre.c:1018)
> ==8404== by 0xA64120: PCSetType(_p_PC*, char const*)
> (pcset.c:83)
> ==8404== by 0x46B3FE:
> PetscLinearSolver::setupSolver(MatStructure, char const*,
> char const*) (petscLinearSolver.cpp:331)
> ==8404== by 0x46E7D1:
> amr2D::fvm::pnpSolver::initialize() (pnpSolver_2d_FVM.cpp:46)
> ==8404== by 0x40D464: main (main_2D_cylinders.cpp:299)
> ==8404==
> ==8404== Use of uninitialised value of size 8
> ==8404== at 0x8283154: __intel_new_memset (in
> /opt/apps/intel/11.1/lib/intel64/libirc.so)
> ==8404== by 0x8261535: _intel_fast_memset.J (in
> /opt/apps/intel/11.1/lib/intel64/libirc.so)
> ==8404== by 0x74B221A: calloc (mvapich_malloc.c:3826)
> ==8404== by 0x747D79D: MPIU_Handle_obj_alloc_unsafe
> (handlemem.c:363)
> ==8404== by 0x747D665: MPIU_Handle_obj_alloc
> (handlemem.c:307)
> ==8404== by 0x744F596: MPIR_Comm_create (commutil.c:101)
> ==8404== by 0x744E84D: MPIR_Comm_copy (commutil.c:969)
> ==8404== by 0x7447F14: PMPI_Comm_dup (comm_dup.c:177)
> ==8404== by 0xB2292A: PCCreate_HYPRE (hypre.c:1018)
> ==8404== by 0xA64120: PCSetType(_p_PC*, char const*)
> (pcset.c:83)
> ==8404== by 0x46B3FE:
> PetscLinearSolver::setupSolver(MatStructure, char const*,
> char const*) (petscLinearSolver.cpp:331)
> ==8404== by 0x46E7D1:
> amr2D::fvm::pnpSolver::initialize() (pnpSolver_2d_FVM.cpp:46)
> ==8404==
> ==8404== Conditional jump or move depends on uninitialised
> value(s)
> ==8404== at 0x74B236A: calloc (mvapich_malloc.c:3756)
> ==8404== by 0x747D714: MPIU_Handle_obj_alloc_unsafe
> (handlemem.c:363)
> ==8404== by 0x747D665: MPIU_Handle_obj_alloc
> (handlemem.c:307)
> ==8404== by 0x744F596: MPIR_Comm_create (commutil.c:101)
> ==8404== by 0x744E84D: MPIR_Comm_copy (commutil.c:969)
> ==8404== by 0x7447F14: PMPI_Comm_dup (comm_dup.c:177)
> ==8404== by 0xB2292A: PCCreate_HYPRE (hypre.c:1018)
> ==8404== by 0xA64120: PCSetType(_p_PC*, char const*)
> (pcset.c:83)
> ==8404== by 0x46B3FE:
> PetscLinearSolver::setupSolver(MatStructure, char const*,
> char const*) (petscLinearSolver.cpp:331)
> ==8404== by 0x46E7D1:
> amr2D::fvm::pnpSolver::initialize() (pnpSolver_2d_FVM.cpp:46)
> ==8404== by 0x40D464: main (main_2D_cylinders.cpp:299)
> ==8404==
> ==8404== Conditional jump or move depends on uninitialised
> value(s)
> ==8404== at 0x74B21CD: calloc (mvapich_malloc.c:3825)
> ==8404== by 0x747D714: MPIU_Handle_obj_alloc_unsafe
> (handlemem.c:363)
> ==8404== by 0x747D665: MPIU_Handle_obj_alloc
> (handlemem.c:307)
> ==8404== by 0x744F596: MPIR_Comm_create (commutil.c:101)
> ==8404== by 0x744E84D: MPIR_Comm_copy (commutil.c:969)
> ==8404== by 0x7447F14: PMPI_Comm_dup (comm_dup.c:177)
> ==8404== by 0xB2292A: PCCreate_HYPRE (hypre.c:1018)
> ==8404== by 0xA64120: PCSetType(_p_PC*, char const*)
> (pcset.c:83)
> ==8404== by 0x46B3FE:
> PetscLinearSolver::setupSolver(MatStructure, char const*,
> char const*) (petscLinearSolver.cpp:331)
> ==8404== by 0x46E7D1:
> amr2D::fvm::pnpSolver::initialize() (pnpSolver_2d_FVM.cpp:46)
> ==8404== by 0x40D464: main (main_2D_cylinders.cpp:299)
> ==8404==
> ==8404== Use of uninitialised value of size 8
> ==8404== at 0x8283136: __intel_new_memset (in
> /opt/apps/intel/11.1/lib/intel64/libirc.so)
> ==8404== by 0x8261535: _intel_fast_memset.J (in
> /opt/apps/intel/11.1/lib/intel64/libirc.so)
> ==8404== by 0x74B221A: calloc (mvapich_malloc.c:3826)
> ==8404== by 0x747D714: MPIU_Handle_obj_alloc_unsafe
> (handlemem.c:363)
> ==8404== by 0x747D665: MPIU_Handle_obj_alloc
> (handlemem.c:307)
> ==8404== by 0x744F596: MPIR_Comm_create (commutil.c:101)
> ==8404== by 0x744E84D: MPIR_Comm_copy (commutil.c:969)
> ==8404== by 0x7447F14: PMPI_Comm_dup (comm_dup.c:177)
> ==8404== by 0xB2292A: PCCreate_HYPRE (hypre.c:1018)
> ==8404== by 0xA64120: PCSetType(_p_PC*, char const*)
> (pcset.c:83)
> ==8404== by 0x46B3FE:
> PetscLinearSolver::setupSolver(MatStructure, char const*,
> char const*) (petscLinearSolver.cpp:331)
> ==8404== by 0x46E7D1:
> amr2D::fvm::pnpSolver::initialize() (pnpSolver_2d_FVM.cpp:46)
> ==8404==
> ==8404== Conditional jump or move depends on uninitialised
> value(s)
> ==8404== at 0x74B236A: calloc (mvapich_malloc.c:3756)
> ==8404== by 0x1623FF2: hypre_CAlloc (hypre_memory.c:121)
> ==8404== by 0x14E6385: hypre_BoomerAMGCreate
> (par_amg.c:203)
> ==8404== by 0x14E2E10: HYPRE_BoomerAMGCreate
> (HYPRE_parcsr_amg.c:31)
> ==8404== by 0xB1C33B: PCHYPRESetType_HYPRE (hypre.c:817)
> ==8404== by 0xB2117F: PCSetFromOptions_HYPRE(_p_PC*)
> (hypre.c:895)
> ==8404== by 0xA65705: PCSetFromOptions(_p_PC*)
> (pcset.c:196)
> ==8404== by 0x46B487:
> PetscLinearSolver::setupSolver(MatStructure, char const*,
> char const*) (petscLinearSolver.cpp:332)
> ==8404== by 0x46E7D1:
> amr2D::fvm::pnpSolver::initialize() (pnpSolver_2d_FVM.cpp:46)
> ==8404== by 0x40D464: main (main_2D_cylinders.cpp:299)
> ==8404==
> Solving a nonlinear PB to get steady state solution ...
> ==8404== Conditional jump or move depends on uninitialised
> value(s)
> ==8404== at 0x74B21CD: calloc (mvapich_malloc.c:3825)
> ==8404== by 0x1623FF2: hypre_CAlloc (hypre_memory.c:121)
> ==8404== by 0x14DB097:
> hypre_IJMatrixSetDiagOffdSizesParCSR (IJMatrix_parcsr.c:179)
> ==8404== by 0x14D97C9: HYPRE_IJMatrixSetDiagOffdSizes
> (HYPRE_IJMatrix.c:818)
> ==8404== by 0x11A2728:
> MatHYPRE_IJMatrixPreallocate(_p_Mat*, _p_Mat*,
> hypre_IJMatrix_struct*) (mhyp.c:48)
> ==8404== by 0x11A3E9C: MatHYPRE_IJMatrixCreate(_p_Mat*,
> hypre_IJMatrix_struct**) (mhyp.c:80)
> ==8404== by 0xAFDA92: PCSetUp_HYPRE(_p_PC*) (hypre.c:100)
> ==8404== by 0x12293CE: PCSetUp(_p_PC*) (precon.c:832)
> ==8404== by 0xC1D524: KSPSetUp(_p_KSP*) (itfunc.c:278)
> ==8404== by 0xC1EFD9: KSPSolve(_p_KSP*, _p_Vec*,
> _p_Vec*) (itfunc.c:402)
> ==8404== by 0x46C59F:
> PetscLinearSolver::solve(ArrayV<double>&, PetscBool)
> (petscLinearSolver.cpp:402)
> ==8404== by 0x472A92:
> amr2D::fvm::pbSolver::SolveNonLinearPB(double, int)
> (pbSolver_2d_FVM.cpp:148)
> ==8404==
> ==8404== Conditional jump or move depends on uninitialised
> value(s)
> ==8404== at 0x74AECA4: _int_malloc (mvapich_malloc.c:4332)
> ==8404== by 0x74AEE8D: malloc (mvapich_malloc.c:3409)
> ==8404== by 0x74AFB0F: memalign (mvapich_malloc.c:3626)
> ==8404== by 0x494BF3: PetscMallocAlign(unsigned long,
> int, char const*, char const*, char const*, void**) (mal.c:30)
> ==8404== by 0x496DFD: PetscTrMallocDefault(unsigned
> long, int, char const*, char const*, char const*, void**)
> (mtr.c:190)
> ==8404== by 0x5FA4BA: VecCreate_Seq (bvec3.c:40)
> ==8404== by 0x5B36DC: VecSetType(_p_Vec*, char const*)
> (vecreg.c:53)
> ==8404== by 0x614EA3: VecCreate_Standard (pbvec.c:264)
> ==8404== by 0x5B36DC: VecSetType(_p_Vec*, char const*)
> (vecreg.c:53)
> ==8404== by 0x703809: MatGetVecs(_p_Mat*, _p_Vec**,
> _p_Vec**) (matrix.c:8149)
> ==8404== by 0xAFDB5E: PCSetUp_HYPRE(_p_PC*) (hypre.c:104)
> ==8404== by 0x12293CE: PCSetUp(_p_PC*) (precon.c:832)
> ==8404==
> ==8404== Syscall param mmap(length) contains uninitialised
> byte(s)
> ==8404== at 0x3E3CED10EA: mmap (in /lib64/libc-2.5.so
> <http://libc-2.5.so>)
> ==8404== by 0x74AECD1: _int_malloc (mvapich_malloc.c:4332)
> ==8404== by 0x74AEE8D: malloc (mvapich_malloc.c:3409)
> ==8404== by 0x74AFB0F: memalign (mvapich_malloc.c:3626)
> ==8404== by 0x494BF3: PetscMallocAlign(unsigned long,
> int, char const*, char const*, char const*, void**) (mal.c:30)
> ==8404== by 0x496DFD: PetscTrMallocDefault(unsigned
> long, int, char const*, char const*, char const*, void**)
> (mtr.c:190)
> ==8404== by 0x5FA4BA: VecCreate_Seq (bvec3.c:40)
> ==8404== by 0x5B36DC: VecSetType(_p_Vec*, char const*)
> (vecreg.c:53)
> ==8404== by 0x614EA3: VecCreate_Standard (pbvec.c:264)
> ==8404== by 0x5B36DC: VecSetType(_p_Vec*, char const*)
> (vecreg.c:53)
> ==8404== by 0x703809: MatGetVecs(_p_Mat*, _p_Vec**,
> _p_Vec**) (matrix.c:8149)
> ==8404== by 0xAFDB5E: PCSetUp_HYPRE(_p_PC*) (hypre.c:104)
> ==8404==
> ==8404== Conditional jump or move depends on uninitialised
> value(s)
> ==8404== at 0x74AEA3E: _int_malloc (mvapich_malloc.c:4332)
> ==8404== by 0x74AEE8D: malloc (mvapich_malloc.c:3409)
> ==8404== by 0x74AFB0F: memalign (mvapich_malloc.c:3626)
> ==8404== by 0x494BF3: PetscMallocAlign(unsigned long,
> int, char const*, char const*, char const*, void**) (mal.c:30)
> ==8404== by 0x496DFD: PetscTrMallocDefault(unsigned
> long, int, char const*, char const*, char const*, void**)
> (mtr.c:190)
> ==8404== by 0x5FA4BA: VecCreate_Seq (bvec3.c:40)
> ==8404== by 0x5B36DC: VecSetType(_p_Vec*, char const*)
> (vecreg.c:53)
> ==8404== by 0x614EA3: VecCreate_Standard (pbvec.c:264)
> ==8404== by 0x5B36DC: VecSetType(_p_Vec*, char const*)
> (vecreg.c:53)
> ==8404== by 0x703809: MatGetVecs(_p_Mat*, _p_Vec**,
> _p_Vec**) (matrix.c:8149)
> ==8404== by 0xAFDB5E: PCSetUp_HYPRE(_p_PC*) (hypre.c:104)
> ==8404== by 0x12293CE: PCSetUp(_p_PC*) (precon.c:832)
> ==8404==
> ==8404== Conditional jump or move depends on uninitialised
> value(s)
> ==8404== at 0x74AEA70: _int_malloc (mvapich_malloc.c:4332)
> ==8404== by 0x74AEE8D: malloc (mvapich_malloc.c:3409)
> ==8404== by 0x74AFB0F: memalign (mvapich_malloc.c:3626)
> ==8404== by 0x494BF3: PetscMallocAlign(unsigned long,
> int, char const*, char const*, char const*, void**) (mal.c:30)
> ==8404== by 0x496DFD: PetscTrMallocDefault(unsigned
> long, int, char const*, char const*, char const*, void**)
> (mtr.c:190)
> ==8404== by 0x5FA4BA: VecCreate_Seq (bvec3.c:40)
> ==8404== by 0x5B36DC: VecSetType(_p_Vec*, char const*)
> (vecreg.c:53)
> ==8404== by 0x614EA3: VecCreate_Standard (pbvec.c:264)
> ==8404== by 0x5B36DC: VecSetType(_p_Vec*, char const*)
> (vecreg.c:53)
> ==8404== by 0x703809: MatGetVecs(_p_Mat*, _p_Vec**,
> _p_Vec**) (matrix.c:8149)
> ==8404== by 0xAFDB5E: PCSetUp_HYPRE(_p_PC*) (hypre.c:104)
> ==8404== by 0x12293CE: PCSetUp(_p_PC*) (precon.c:832)
> ==8404==
> ==8404== Use of uninitialised value of size 8
> ==8404== at 0x74AEA8A: _int_malloc (mvapich_malloc.c:4332)
> ==8404== by 0x74AEE8D: malloc (mvapich_malloc.c:3409)
> ==8404== by 0x74AFB0F: memalign (mvapich_malloc.c:3626)
> ==8404== by 0x494BF3: PetscMallocAlign(unsigned long,
> int, char const*, char const*, char const*, void**) (mal.c:30)
> ==8404== by 0x496DFD: PetscTrMallocDefault(unsigned
> long, int, char const*, char const*, char const*, void**)
> (mtr.c:190)
> ==8404== by 0x5FA4BA: VecCreate_Seq (bvec3.c:40)
> ==8404== by 0x5B36DC: VecSetType(_p_Vec*, char const*)
> (vecreg.c:53)
> ==8404== by 0x614EA3: VecCreate_Standard (pbvec.c:264)
> ==8404== by 0x5B36DC: VecSetType(_p_Vec*, char const*)
> (vecreg.c:53)
> ==8404== by 0x703809: MatGetVecs(_p_Mat*, _p_Vec**,
> _p_Vec**) (matrix.c:8149)
> ==8404== by 0xAFDB5E: PCSetUp_HYPRE(_p_PC*) (hypre.c:104)
> ==8404== by 0x12293CE: PCSetUp(_p_PC*) (precon.c:832)
> ==8404==
> ==8404== Conditional jump or move depends on uninitialised
> value(s)
> ==8404== at 0x74AEA98: _int_malloc (mvapich_malloc.c:4332)
> ==8404== by 0x74AEE8D: malloc (mvapich_malloc.c:3409)
> ==8404== by 0x74AFB0F: memalign (mvapich_malloc.c:3626)
> ==8404== by 0x494BF3: PetscMallocAlign(unsigned long,
> int, char const*, char const*, char const*, void**) (mal.c:30)
> ==8404== by 0x496DFD: PetscTrMallocDefault(unsigned
> long, int, char const*, char const*, char const*, void**)
> (mtr.c:190)
> ==8404== by 0x5FA4BA: VecCreate_Seq (bvec3.c:40)
> ==8404== by 0x5B36DC: VecSetType(_p_Vec*, char const*)
> (vecreg.c:53)
> ==8404== by 0x614EA3: VecCreate_Standard (pbvec.c:264)
> ==8404== by 0x5B36DC: VecSetType(_p_Vec*, char const*)
> (vecreg.c:53)
> ==8404== by 0x703809: MatGetVecs(_p_Mat*, _p_Vec**,
> _p_Vec**) (matrix.c:8149)
> ==8404== by 0xAFDB5E: PCSetUp_HYPRE(_p_PC*) (hypre.c:104)
> ==8404== by 0x12293CE: PCSetUp(_p_PC*) (precon.c:832)
> ==8404==
> ==8404== Conditional jump or move depends on uninitialised
> value(s)
> ==8404== at 0x74AD6E6: _int_free (mvapich_malloc.c:4366)
> ==8404== by 0x74AEAA8: _int_malloc (mvapich_malloc.c:4332)
> ==8404== by 0x74AEE8D: malloc (mvapich_malloc.c:3409)
> ==8404== by 0x74AFB0F: memalign (mvapich_malloc.c:3626)
> ==8404== by 0x494BF3: PetscMallocAlign(unsigned long,
> int, char const*, char const*, char const*, void**) (mal.c:30)
> ==8404== by 0x496DFD: PetscTrMallocDefault(unsigned
> long, int, char const*, char const*, char const*, void**)
> (mtr.c:190)
> ==8404== by 0x5FA4BA: VecCreate_Seq (bvec3.c:40)
> ==8404== by 0x5B36DC: VecSetType(_p_Vec*, char const*)
> (vecreg.c:53)
> ==8404== by 0x614EA3: VecCreate_Standard (pbvec.c:264)
> ==8404== by 0x5B36DC: VecSetType(_p_Vec*, char const*)
> (vecreg.c:53)
> ==8404== by 0x703809: MatGetVecs(_p_Mat*, _p_Vec**,
> _p_Vec**) (matrix.c:8149)
> ==8404== by 0xAFDB5E: PCSetUp_HYPRE(_p_PC*) (hypre.c:104)
> ==8404==
> ==8404== Use of uninitialised value of size 8
> ==8404== at 0x74AD723: _int_free (mvapich_malloc.c:4389)
> ==8404== by 0x74AEAA8: _int_malloc (mvapich_malloc.c:4332)
> ==8404== by 0x74AEE8D: malloc (mvapich_malloc.c:3409)
> ==8404== by 0x74AFB0F: memalign (mvapich_malloc.c:3626)
> ==8404== by 0x494BF3: PetscMallocAlign(unsigned long,
> int, char const*, char const*, char const*, void**) (mal.c:30)
> ==8404== by 0x496DFD: PetscTrMallocDefault(unsigned
> long, int, char const*, char const*, char const*, void**)
> (mtr.c:190)
> ==8404== by 0x5FA4BA: VecCreate_Seq (bvec3.c:40)
> ==8404== by 0x5B36DC: VecSetType(_p_Vec*, char const*)
> (vecreg.c:53)
> ==8404== by 0x614EA3: VecCreate_Standard (pbvec.c:264)
> ==8404== by 0x5B36DC: VecSetType(_p_Vec*, char const*)
> (vecreg.c:53)
> ==8404== by 0x703809: MatGetVecs(_p_Mat*, _p_Vec**,
> _p_Vec**) (matrix.c:8149)
> ==8404== by 0xAFDB5E: PCSetUp_HYPRE(_p_PC*) (hypre.c:104)
> ==8404==
> ==8404== Conditional jump or move depends on uninitialised
> value(s)
> ==8404== at 0x74AD755: _int_free (mvapich_malloc.c:4400)
> ==8404== by 0x74AEAA8: _int_malloc (mvapich_malloc.c:4332)
> ==8404== by 0x74AEE8D: malloc (mvapich_malloc.c:3409)
> ==8404== by 0x74AFB0F: memalign (mvapich_malloc.c:3626)
> ==8404== by 0x494BF3: PetscMallocAlign(unsigned long,
> int, char const*, char const*, char const*, void**) (mal.c:30)
> ==8404== by 0x496DFD: PetscTrMallocDefault(unsigned
> long, int, char const*, char const*, char const*, void**)
> (mtr.c:190)
> ==8404== by 0x5FA4BA: VecCreate_Seq (bvec3.c:40)
> ==8404== by 0x5B36DC: VecSetType(_p_Vec*, char const*)
> (vecreg.c:53)
> ==8404== by 0x614EA3: VecCreate_Standard (pbvec.c:264)
> ==8404== by 0x5B36DC: VecSetType(_p_Vec*, char const*)
> (vecreg.c:53)
> ==8404== by 0x703809: MatGetVecs(_p_Mat*, _p_Vec**,
> _p_Vec**) (matrix.c:8149)
> ==8404== by 0xAFDB5E: PCSetUp_HYPRE(_p_PC*) (hypre.c:104)
> ==8404==
> ==8404== Use of uninitialised value of size 8
> ==8404== at 0x74AD75B: _int_free (mvapich_malloc.c:4402)
> ==8404== by 0x74AEAA8: _int_malloc (mvapich_malloc.c:4332)
> ==8404== by 0x74AEE8D: malloc (mvapich_malloc.c:3409)
> ==8404== by 0x74AFB0F: memalign (mvapich_malloc.c:3626)
> ==8404== by 0x494BF3: PetscMallocAlign(unsigned long,
> int, char const*, char const*, char const*, void**) (mal.c:30)
> ==8404== by 0x496DFD: PetscTrMallocDefault(unsigned
> long, int, char const*, char const*, char const*, void**)
> (mtr.c:190)
> ==8404== by 0x5FA4BA: VecCreate_Seq (bvec3.c:40)
> ==8404== by 0x5B36DC: VecSetType(_p_Vec*, char const*)
> (vecreg.c:53)
> ==8404== by 0x614EA3: VecCreate_Standard (pbvec.c:264)
> ==8404== by 0x5B36DC: VecSetType(_p_Vec*, char const*)
> (vecreg.c:53)
> ==8404== by 0x703809: MatGetVecs(_p_Mat*, _p_Vec**,
> _p_Vec**) (matrix.c:8149)
> ==8404== by 0xAFDB5E: PCSetUp_HYPRE(_p_PC*) (hypre.c:104)
> ==8404==
> ==8404== Use of uninitialised value of size 8
> ==8404== at 0x74AD77E: _int_free (mvapich_malloc.c:4409)
> ==8404== by 0x74AEAA8: _int_malloc (mvapich_malloc.c:4332)
> ==8404== by 0x74AEE8D: malloc (mvapich_malloc.c:3409)
> ==8404== by 0x74AFB0F: memalign (mvapich_malloc.c:3626)
> ==8404== by 0x494BF3: PetscMallocAlign(unsigned long,
> int, char const*, char const*, char const*, void**) (mal.c:30)
> ==8404== by 0x496DFD: PetscTrMallocDefault(unsigned
> long, int, char const*, char const*, char const*, void**)
> (mtr.c:190)
> ==8404== by 0x5FA4BA: VecCreate_Seq (bvec3.c:40)
> ==8404== by 0x5B36DC: VecSetType(_p_Vec*, char const*)
> (vecreg.c:53)
> ==8404== by 0x614EA3: VecCreate_Standard (pbvec.c:264)
> ==8404== by 0x5B36DC: VecSetType(_p_Vec*, char const*)
> (vecreg.c:53)
> ==8404== by 0x703809: MatGetVecs(_p_Mat*, _p_Vec**,
> _p_Vec**) (matrix.c:8149)
> ==8404== by 0xAFDB5E: PCSetUp_HYPRE(_p_PC*) (hypre.c:104)
> ==8404==
> ==8404== Use of uninitialised value of size 8
> ==8404== at 0x74AD7A9: _int_free (mvapich_malloc.c:4425)
> ==8404== by 0x74AEAA8: _int_malloc (mvapich_malloc.c:4332)
> ==8404== by 0x74AEE8D: malloc (mvapich_malloc.c:3409)
> ==8404== by 0x74AFB0F: memalign (mvapich_malloc.c:3626)
> ==8404== by 0x494BF3: PetscMallocAlign(unsigned long,
> int, char const*, char const*, char const*, void**) (mal.c:30)
> ==8404== by 0x496DFD: PetscTrMallocDefault(unsigned
> long, int, char const*, char const*, char const*, void**)
> (mtr.c:190)
> ==8404== by 0x5FA4BA: VecCreate_Seq (bvec3.c:40)
> ==8404== by 0x5B36DC: VecSetType(_p_Vec*, char const*)
> (vecreg.c:53)
> ==8404== by 0x614EA3: VecCreate_Standard (pbvec.c:264)
> ==8404== by 0x5B36DC: VecSetType(_p_Vec*, char const*)
> (vecreg.c:53)
> ==8404== by 0x703809: MatGetVecs(_p_Mat*, _p_Vec**,
> _p_Vec**) (matrix.c:8149)
> ==8404== by 0xAFDB5E: PCSetUp_HYPRE(_p_PC*) (hypre.c:104)
> ==8404==
> ==8404== Conditional jump or move depends on uninitialised
> value(s)
> ==8404== at 0x74AD7B4: _int_free (mvapich_malloc.c:4455)
> ==8404== by 0x74AEAA8: _int_malloc (mvapich_malloc.c:4332)
> ==8404== by 0x74AEE8D: malloc (mvapich_malloc.c:3409)
> ==8404== by 0x74AFB0F: memalign (mvapich_malloc.c:3626)
> ==8404== by 0x494BF3: PetscMallocAlign(unsigned long,
> int, char const*, char const*, char const*, void**) (mal.c:30)
> ==8404== by 0x496DFD: PetscTrMallocDefault(unsigned
> long, int, char const*, char const*, char const*, void**)
> (mtr.c:190)
> ==8404== by 0x5FA4BA: VecCreate_Seq (bvec3.c:40)
> ==8404== by 0x5B36DC: VecSetType(_p_Vec*, char const*)
> (vecreg.c:53)
> ==8404== by 0x614EA3: VecCreate_Standard (pbvec.c:264)
> ==8404== by 0x5B36DC: VecSetType(_p_Vec*, char const*)
> (vecreg.c:53)
> ==8404== by 0x703809: MatGetVecs(_p_Mat*, _p_Vec**,
> _p_Vec**) (matrix.c:8149)
> ==8404== by 0xAFDB5E: PCSetUp_HYPRE(_p_PC*) (hypre.c:104)
> ==8404==
> ==8404== Conditional jump or move depends on uninitialised
> value(s)
> ==8404== at 0x74ADDAE: _int_malloc (mvapich_malloc.c:4116)
> ==8404== by 0x74AEE8D: malloc (mvapich_malloc.c:3409)
> ==8404== by 0x74AFB0F: memalign (mvapich_malloc.c:3626)
> ==8404== by 0x494BF3: PetscMallocAlign(unsigned long,
> int, char const*, char const*, char const*, void**) (mal.c:30)
> ==8404== by 0x496DFD: PetscTrMallocDefault(unsigned
> long, int, char const*, char const*, char const*, void**)
> (mtr.c:190)
> ==8404== by 0x5E9616: VecCreate_Seq_Private(_p_Vec*,
> double const*) (bvec2.c:887)
> ==8404== by 0x5FA62A: VecCreate_Seq (bvec3.c:42)
> ==8404== by 0x5B36DC: VecSetType(_p_Vec*, char const*)
> (vecreg.c:53)
> ==8404== by 0x614EA3: VecCreate_Standard (pbvec.c:264)
> ==8404== by 0x5B36DC: VecSetType(_p_Vec*, char const*)
> (vecreg.c:53)
> ==8404== by 0x703809: MatGetVecs(_p_Mat*, _p_Vec**,
> _p_Vec**) (matrix.c:8149)
> ==8404== by 0xAFDB5E: PCSetUp_HYPRE(_p_PC*) (hypre.c:104)
> ==8404==
> ==8404== Conditional jump or move depends on uninitialised
> value(s)
> ==8404== at 0x74ADDD9: _int_malloc (mvapich_malloc.c:4122)
> ==8404== by 0x74AEE8D: malloc (mvapich_malloc.c:3409)
> ==8404== by 0x74AFB0F: memalign (mvapich_malloc.c:3626)
> ==8404== by 0x494BF3: PetscMallocAlign(unsigned long,
> int, char const*, char const*, char const*, void**) (mal.c:30)
> ==8404== by 0x496DFD: PetscTrMallocDefault(unsigned
> long, int, char const*, char const*, char const*, void**)
> (mtr.c:190)
> ==8404== by 0x5E9616: VecCreate_Seq_Private(_p_Vec*,
> double const*) (bvec2.c:887)
> ==8404== by 0x5FA62A: VecCreate_Seq (bvec3.c:42)
> ==8404== by 0x5B36DC: VecSetType(_p_Vec*, char const*)
> (vecreg.c:53)
> ==8404== by 0x614EA3: VecCreate_Standard (pbvec.c:264)
> ==8404== by 0x5B36DC: VecSetType(_p_Vec*, char const*)
> (vecreg.c:53)
> ==8404== by 0x703809: MatGetVecs(_p_Mat*, _p_Vec**,
> _p_Vec**) (matrix.c:8149)
> ==8404== by 0xAFDB5E: PCSetUp_HYPRE(_p_PC*) (hypre.c:104)
> ==8404==
> ==8404== Conditional jump or move depends on uninitialised
> value(s)
> ==8404== at 0x74ADDEC: _int_malloc (mvapich_malloc.c:4122)
> ==8404== by 0x74AEE8D: malloc (mvapich_malloc.c:3409)
> ==8404== by 0x74AFB0F: memalign (mvapich_malloc.c:3626)
> ==8404== by 0x494BF3: PetscMallocAlign(unsigned long,
> int, char const*, char const*, char const*, void**) (mal.c:30)
> ==8404== by 0x496DFD: PetscTrMallocDefault(unsigned
> long, int, char const*, char const*, char const*, void**)
> (mtr.c:190)
> ==8404== by 0x5E9616: VecCreate_Seq_Private(_p_Vec*,
> double const*) (bvec2.c:887)
> ==8404== by 0x5FA62A: VecCreate_Seq (bvec3.c:42)
> ==8404== by 0x5B36DC: VecSetType(_p_Vec*, char const*)
> (vecreg.c:53)
> ==8404== by 0x614EA3: VecCreate_Standard (pbvec.c:264)
> ==8404== by 0x5B36DC: VecSetType(_p_Vec*, char const*)
> (vecreg.c:53)
> ==8404== by 0x703809: MatGetVecs(_p_Mat*, _p_Vec**,
> _p_Vec**) (matrix.c:8149)
> ==8404== by 0xAFDB5E: PCSetUp_HYPRE(_p_PC*) (hypre.c:104)
> ==8404==
> ==8404== Conditional jump or move depends on uninitialised
> value(s)
> ==8404== at 0x74ADDFF: _int_malloc (mvapich_malloc.c:4122)
> ==8404== by 0x74AEE8D: malloc (mvapich_malloc.c:3409)
> ==8404== by 0x74AFB0F: memalign (mvapich_malloc.c:3626)
> ==8404== by 0x494BF3: PetscMallocAlign(unsigned long,
> int, char const*, char const*, char const*, void**) (mal.c:30)
> ==8404== by 0x496DFD: PetscTrMallocDefault(unsigned
> long, int, char const*, char const*, char const*, void**)
> (mtr.c:190)
> ==8404== by 0x5E9616: VecCreate_Seq_Private(_p_Vec*,
> double const*) (bvec2.c:887)
> ==8404== by 0x5FA62A: VecCreate_Seq (bvec3.c:42)
> ==8404== by 0x5B36DC: VecSetType(_p_Vec*, char const*)
> (vecreg.c:53)
> ==8404== by 0x614EA3: VecCreate_Standard (pbvec.c:264)
> ==8404== by 0x5B36DC: VecSetType(_p_Vec*, char const*)
> (vecreg.c:53)
> ==8404== by 0x703809: MatGetVecs(_p_Mat*, _p_Vec**,
> _p_Vec**) (matrix.c:8149)
> ==8404== by 0xAFDB5E: PCSetUp_HYPRE(_p_PC*) (hypre.c:104)
> ==8404==
> ==8404== Use of uninitialised value of size 8
> ==8404== at 0x74ADE42: _int_malloc (mvapich_malloc.c:4124)
> ==8404== by 0x74AEE8D: malloc (mvapich_malloc.c:3409)
> ==8404== by 0x74AFB0F: memalign (mvapich_malloc.c:3626)
> ==8404== by 0x494BF3: PetscMallocAlign(unsigned long,
> int, char const*, char const*, char const*, void**) (mal.c:30)
> ==8404== by 0x496DFD: PetscTrMallocDefault(unsigned
> long, int, char const*, char const*, char const*, void**)
> (mtr.c:190)
> ==8404== by 0x5E9616: VecCreate_Seq_Private(_p_Vec*,
> double const*) (bvec2.c:887)
> ==8404== by 0x5FA62A: VecCreate_Seq (bvec3.c:42)
> ==8404== by 0x5B36DC: VecSetType(_p_Vec*, char const*)
> (vecreg.c:53)
> ==8404== by 0x614EA3: VecCreate_Standard (pbvec.c:264)
> ==8404== by 0x5B36DC: VecSetType(_p_Vec*, char const*)
> (vecreg.c:53)
> ==8404== by 0x703809: MatGetVecs(_p_Mat*, _p_Vec**,
> _p_Vec**) (matrix.c:8149)
> ==8404== by 0xAFDB5E: PCSetUp_HYPRE(_p_PC*) (hypre.c:104)
> ==8404==
> ==8404== Conditional jump or move depends on uninitialised
> value(s)
> ==8404== at 0x74ADE4C: _int_malloc (mvapich_malloc.c:4126)
> ==8404== by 0x74AEE8D: malloc (mvapich_malloc.c:3409)
> ==8404== by 0x74AFB0F: memalign (mvapich_malloc.c:3626)
> ==8404== by 0x494BF3: PetscMallocAlign(unsigned long,
> int, char const*, char const*, char const*, void**) (mal.c:30)
> ==8404== by 0x496DFD: PetscTrMallocDefault(unsigned
> long, int, char const*, char const*, char const*, void**)
> (mtr.c:190)
> ==8404== by 0x5E9616: VecCreate_Seq_Private(_p_Vec*,
> double const*) (bvec2.c:887)
> ==8404== by 0x5FA62A: VecCreate_Seq (bvec3.c:42)
> ==8404== by 0x5B36DC: VecSetType(_p_Vec*, char const*)
> (vecreg.c:53)
> ==8404== by 0x614EA3: VecCreate_Standard (pbvec.c:264)
> ==8404== by 0x5B36DC: VecSetType(_p_Vec*, char const*)
> (vecreg.c:53)
> ==8404== by 0x703809: MatGetVecs(_p_Mat*, _p_Vec**,
> _p_Vec**) (matrix.c:8149)
> ==8404== by 0xAFDB5E: PCSetUp_HYPRE(_p_PC*) (hypre.c:104)
> ==8404==
> ==8404== Use of uninitialised value of size 8
> ==8404== at 0x74ADE88: _int_malloc (mvapich_malloc.c:4148)
> ==8404== by 0x74AEE8D: malloc (mvapich_malloc.c:3409)
> ==8404== by 0x74AFB0F: memalign (mvapich_malloc.c:3626)
> ==8404== by 0x494BF3: PetscMallocAlign(unsigned long,
> int, char const*, char const*, char const*, void**) (mal.c:30)
> ==8404== by 0x496DFD: PetscTrMallocDefault(unsigned
> long, int, char const*, char const*, char const*, void**)
> (mtr.c:190)
> ==8404== by 0x5E9616: VecCreate_Seq_Private(_p_Vec*,
> double const*) (bvec2.c:887)
> ==8404== by 0x5FA62A: VecCreate_Seq (bvec3.c:42)
> ==8404== by 0x5B36DC: VecSetType(_p_Vec*, char const*)
> (vecreg.c:53)
> ==8404== by 0x614EA3: VecCreate_Standard (pbvec.c:264)
> ==8404== by 0x5B36DC: VecSetType(_p_Vec*, char const*)
> (vecreg.c:53)
> ==8404== by 0x703809: MatGetVecs(_p_Mat*, _p_Vec**,
> _p_Vec**) (matrix.c:8149)
> ==8404== by 0xAFDB5E: PCSetUp_HYPRE(_p_PC*) (hypre.c:104)
> ==8404==
> ==8404== Use of uninitialised value of size 8
> ==8404== at 0x74ADE9C: _int_malloc (mvapich_malloc.c:4152)
> ==8404== by 0x74AEE8D: malloc (mvapich_malloc.c:3409)
> ==8404== by 0x74AFB0F: memalign (mvapich_malloc.c:3626)
> ==8404== by 0x494BF3: PetscMallocAlign(unsigned long,
> int, char const*, char const*, char const*, void**) (mal.c:30)
> ==8404== by 0x496DFD: PetscTrMallocDefault(unsigned
> long, int, char const*, char const*, char const*, void**)
> (mtr.c:190)
> ==8404== by 0x5E9616: VecCreate_Seq_Private(_p_Vec*,
> double const*) (bvec2.c:887)
> ==8404== by 0x5FA62A: VecCreate_Seq (bvec3.c:42)
> ==8404== by 0x5B36DC: VecSetType(_p_Vec*, char const*)
> (vecreg.c:53)
> ==8404== by 0x614EA3: VecCreate_Standard (pbvec.c:264)
> ==8404== by 0x5B36DC: VecSetType(_p_Vec*, char const*)
> (vecreg.c:53)
> ==8404== by 0x703809: MatGetVecs(_p_Mat*, _p_Vec**,
> _p_Vec**) (matrix.c:8149)
> ==8404== by 0xAFDB5E: PCSetUp_HYPRE(_p_PC*) (hypre.c:104)
> ==8404==
> ==8404== Conditional jump or move depends on uninitialised
> value(s)
> ==8404== at 0x74ADF56: _int_malloc (mvapich_malloc.c:4220)
> ==8404== by 0x74AEE8D: malloc (mvapich_malloc.c:3409)
> ==8404== by 0x74AFB0F: memalign (mvapich_malloc.c:3626)
> ==8404== by 0x494BF3: PetscMallocAlign(unsigned long,
> int, char const*, char const*, char const*, void**) (mal.c:30)
> ==8404== by 0x496DFD: PetscTrMallocDefault(unsigned
> long, int, char const*, char const*, char const*, void**)
> (mtr.c:190)
> ==8404== by 0x5E9616: VecCreate_Seq_Private(_p_Vec*,
> double const*) (bvec2.c:887)
> ==8404== by 0x5FA62A: VecCreate_Seq (bvec3.c:42)
> ==8404== by 0x5B36DC: VecSetType(_p_Vec*, char const*)
> (vecreg.c:53)
> ==8404== by 0x614EA3: VecCreate_Standard (pbvec.c:264)
> ==8404== by 0x5B36DC: VecSetType(_p_Vec*, char const*)
> (vecreg.c:53)
> ==8404== by 0x703809: MatGetVecs(_p_Mat*, _p_Vec**,
> _p_Vec**) (matrix.c:8149)
> ==8404== by 0xAFDB5E: PCSetUp_HYPRE(_p_PC*) (hypre.c:104)
> ==8404==
> ==8404== Conditional jump or move depends on uninitialised
> value(s)
> ==8404== at 0x74ADF72: _int_malloc (mvapich_malloc.c:4227)
> ==8404== by 0x74AEE8D: malloc (mvapich_malloc.c:3409)
> ==8404== by 0x74AFB0F: memalign (mvapich_malloc.c:3626)
> ==8404== by 0x494BF3: PetscMallocAlign(unsigned long,
> int, char const*, char const*, char const*, void**) (mal.c:30)
> ==8404== by 0x496DFD: PetscTrMallocDefault(unsigned
> long, int, char const*, char const*, char const*, void**)
> (mtr.c:190)
> ==8404== by 0x5E9616: VecCreate_Seq_Private(_p_Vec*,
> double const*) (bvec2.c:887)
> ==8404== by 0x5FA62A: VecCreate_Seq (bvec3.c:42)
> ==8404== by 0x5B36DC: VecSetType(_p_Vec*, char const*)
> (vecreg.c:53)
> ==8404== by 0x614EA3: VecCreate_Standard (pbvec.c:264)
> ==8404== by 0x5B36DC: VecSetType(_p_Vec*, char const*)
> (vecreg.c:53)
> ==8404== by 0x703809: MatGetVecs(_p_Mat*, _p_Vec**,
> _p_Vec**) (matrix.c:8149)
> ==8404== by 0xAFDB5E: PCSetUp_HYPRE(_p_PC*) (hypre.c:104)
> ==8404==
> ==8404== Conditional jump or move depends on uninitialised
> value(s)
> ==8404== at 0x74ADF7E: _int_malloc (mvapich_malloc.c:4227)
> ==8404== by 0x74AEE8D: malloc (mvapich_malloc.c:3409)
> ==8404== by 0x74AFB0F: memalign (mvapich_malloc.c:3626)
> ==8404== by 0x494BF3: PetscMallocAlign(unsigned long,
> int, char const*, char const*, char const*, void**) (mal.c:30)
> ==8404== by 0x496DFD: PetscTrMallocDefault(unsigned
> long, int, char const*, char const*, char const*, void**)
> (mtr.c:190)
> ==8404== by 0x5E9616: VecCreate_Seq_Private(_p_Vec*,
> double const*) (bvec2.c:887)
> ==8404== by 0x5FA62A: VecCreate_Seq (bvec3.c:42)
> ==8404== by 0x5B36DC: VecSetType(_p_Vec*, char const*)
> (vecreg.c:53)
> ==8404== by 0x614EA3: VecCreate_Standard (pbvec.c:264)
> ==8404== by 0x5B36DC: VecSetType(_p_Vec*, char const*)
> (vecreg.c:53)
> ==8404== by 0x703809: MatGetVecs(_p_Mat*, _p_Vec**,
> _p_Vec**) (matrix.c:8149)
> ==8404== by 0xAFDB5E: PCSetUp_HYPRE(_p_PC*) (hypre.c:104)
> ==8404==
> ==8404== Conditional jump or move depends on uninitialised
> value(s)
> ==8404== at 0x74ADED9: _int_malloc (mvapich_malloc.c:4168)
> ==8404== by 0x74B2189: calloc (mvapich_malloc.c:3765)
> ==8404== by 0x1623FF2: hypre_CAlloc (hypre_memory.c:121)
> ==8404== by 0x15B62C5: hypre_SeqVectorInitialize
> (vector.c:94)
> ==8404== by 0x158CF25: hypre_ParVectorInitialize
> (par_vector.c:150)
> ==8404== by 0x14E0E57: hypre_IJVectorInitializePar
> (IJVector_parcsr.c:124)
> ==8404== by 0x14DA2B9: HYPRE_IJVectorInitialize
> (HYPRE_IJVector.c:229)
> ==8404== by 0xE77A78: VecHYPRE_IJVectorCreate(_p_Vec*,
> hypre_IJVector_struct**) (vhyp.c:21)
> ==8404== by 0xAFDC0C: PCSetUp_HYPRE(_p_PC*) (hypre.c:105)
> ==8404== by 0x12293CE: PCSetUp(_p_PC*) (precon.c:832)
> ==8404== by 0xC1D524: KSPSetUp(_p_KSP*) (itfunc.c:278)
> ==8404== by 0xC1EFD9: KSPSolve(_p_KSP*, _p_Vec*,
> _p_Vec*) (itfunc.c:402)
> ==8404==
> ==8404== Conditional jump or move depends on uninitialised
> value(s)
> ==8404== at 0x74ADEE6: _int_malloc (mvapich_malloc.c:4165)
> ==8404== by 0x74B2189: calloc (mvapich_malloc.c:3765)
> ==8404== by 0x1623FF2: hypre_CAlloc (hypre_memory.c:121)
> ==8404== by 0x15B62C5: hypre_SeqVectorInitialize
> (vector.c:94)
> ==8404== by 0x158CF25: hypre_ParVectorInitialize
> (par_vector.c:150)
> ==8404== by 0x14E0E57: hypre_IJVectorInitializePar
> (IJVector_parcsr.c:124)
> ==8404== by 0x14DA2B9: HYPRE_IJVectorInitialize
> (HYPRE_IJVector.c:229)
> ==8404== by 0xE77A78: VecHYPRE_IJVectorCreate(_p_Vec*,
> hypre_IJVector_struct**) (vhyp.c:21)
> ==8404== by 0xAFDC0C: PCSetUp_HYPRE(_p_PC*) (hypre.c:105)
> ==8404== by 0x12293CE: PCSetUp(_p_PC*) (precon.c:832)
> ==8404== by 0xC1D524: KSPSetUp(_p_KSP*) (itfunc.c:278)
> ==8404== by 0xC1EFD9: KSPSolve(_p_KSP*, _p_Vec*,
> _p_Vec*) (itfunc.c:402)
> ==8404==
> ==8404== Conditional jump or move depends on uninitialised
> value(s)
> ==8404== at 0x74ADF31: _int_malloc (mvapich_malloc.c:4216)
> ==8404== by 0x74B2189: calloc (mvapich_malloc.c:3765)
> ==8404== by 0x1623FF2: hypre_CAlloc (hypre_memory.c:121)
> ==8404== by 0x15B62C5: hypre_SeqVectorInitialize
> (vector.c:94)
> ==8404== by 0x158CF25: hypre_ParVectorInitialize
> (par_vector.c:150)
> ==8404== by 0x14E0E57: hypre_IJVectorInitializePar
> (IJVector_parcsr.c:124)
> ==8404== by 0x14DA2B9: HYPRE_IJVectorInitialize
> (HYPRE_IJVector.c:229)
> ==8404== by 0xE77A78: VecHYPRE_IJVectorCreate(_p_Vec*,
> hypre_IJVector_struct**) (vhyp.c:21)
> ==8404== by 0xAFDC0C: PCSetUp_HYPRE(_p_PC*) (hypre.c:105)
> ==8404== by 0x12293CE: PCSetUp(_p_PC*) (precon.c:832)
> ==8404== by 0xC1D524: KSPSetUp(_p_KSP*) (itfunc.c:278)
> ==8404== by 0xC1EFD9: KSPSolve(_p_KSP*, _p_Vec*,
> _p_Vec*) (itfunc.c:402)
> ==8404==
> ==8404== Use of uninitialised value of size 8
> ==8404== at 0x74AD75B: _int_free (mvapich_malloc.c:4402)
> ==8404== by 0x74AF651: free (mvapich_malloc.c:3497)
> ==8404== by 0x494CCA: PetscFreeAlign(void*, int, char
> const*, char const*, char const*) (mal.c:75)
> ==8404== by 0x497F91: PetscTrFreeDefault(void*, int,
> char const*, char const*, char const*) (mtr.c:322)
> ==8404== by 0x5E866E: VecDestroy_Seq(_p_Vec*) (bvec2.c:777)
> ==8404== by 0x59F7CD: VecDestroy(_p_Vec**) (vector.c:580)
> ==8404== by 0xAFDD5D: PCSetUp_HYPRE(_p_PC*) (hypre.c:107)
> ==8404== by 0x12293CE: PCSetUp(_p_PC*) (precon.c:832)
> ==8404== by 0xC1D524: KSPSetUp(_p_KSP*) (itfunc.c:278)
> ==8404== by 0xC1EFD9: KSPSolve(_p_KSP*, _p_Vec*,
> _p_Vec*) (itfunc.c:402)
> ==8404== by 0x46C59F:
> PetscLinearSolver::solve(ArrayV<double>&, PetscBool)
> (petscLinearSolver.cpp:402)
> ==8404== by 0x472A92:
> amr2D::fvm::pbSolver::SolveNonLinearPB(double, int)
> (pbSolver_2d_FVM.cpp:148)
> ==8404==
> ==8404== Use of uninitialised value of size 8
> ==8404== at 0x74AD775: _int_free (mvapich_malloc.c:4406)
> ==8404== by 0x74AF651: free (mvapich_malloc.c:3497)
> ==8404== by 0x494CCA: PetscFreeAlign(void*, int, char
> const*, char const*, char const*) (mal.c:75)
> ==8404== by 0x497F91: PetscTrFreeDefault(void*, int,
> char const*, char const*, char const*) (mtr.c:322)
> ==8404== by 0x5E866E: VecDestroy_Seq(_p_Vec*) (bvec2.c:777)
> ==8404== by 0x59F7CD: VecDestroy(_p_Vec**) (vector.c:580)
> ==8404== by 0xAFDD5D: PCSetUp_HYPRE(_p_PC*) (hypre.c:107)
> ==8404== by 0x12293CE: PCSetUp(_p_PC*) (precon.c:832)
> ==8404== by 0xC1D524: KSPSetUp(_p_KSP*) (itfunc.c:278)
> ==8404== by 0xC1EFD9: KSPSolve(_p_KSP*, _p_Vec*,
> _p_Vec*) (itfunc.c:402)
> ==8404== by 0x46C59F:
> PetscLinearSolver::solve(ArrayV<double>&, PetscBool)
> (petscLinearSolver.cpp:402)
> ==8404== by 0x472A92:
> amr2D::fvm::pbSolver::SolveNonLinearPB(double, int)
> (pbSolver_2d_FVM.cpp:148)
> ==8404==
> ==8404== Use of uninitialised value of size 8
> ==8404== at 0x74AD7A9: _int_free (mvapich_malloc.c:4425)
> ==8404== by 0x74AF651: free (mvapich_malloc.c:3497)
> ==8404== by 0x494CCA: PetscFreeAlign(void*, int, char
> const*, char const*, char const*) (mal.c:75)
> ==8404== by 0x497F91: PetscTrFreeDefault(void*, int,
> char const*, char const*, char const*) (mtr.c:322)
> ==8404== by 0x5E866E: VecDestroy_Seq(_p_Vec*) (bvec2.c:777)
> ==8404== by 0x59F7CD: VecDestroy(_p_Vec**) (vector.c:580)
> ==8404== by 0xAFDD5D: PCSetUp_HYPRE(_p_PC*) (hypre.c:107)
> ==8404== by 0x12293CE: PCSetUp(_p_PC*) (precon.c:832)
> ==8404== by 0xC1D524: KSPSetUp(_p_KSP*) (itfunc.c:278)
> ==8404== by 0xC1EFD9: KSPSolve(_p_KSP*, _p_Vec*,
> _p_Vec*) (itfunc.c:402)
> ==8404== by 0x46C59F:
> PetscLinearSolver::solve(ArrayV<double>&, PetscBool)
> (petscLinearSolver.cpp:402)
> ==8404== by 0x472A92:
> amr2D::fvm::pbSolver::SolveNonLinearPB(double, int)
> (pbSolver_2d_FVM.cpp:148)
> ==8404==
> ==8404== Conditional jump or move depends on uninitialised
> value(s)
> ==8404== at 0x74ADDA1: _int_malloc (mvapich_malloc.c:4106)
> ==8404== by 0x74B2189: calloc (mvapich_malloc.c:3765)
> ==8404== by 0x1623FF2: hypre_CAlloc (hypre_memory.c:121)
> ==8404== by 0x15B3AA1: hypre_CSRMatrixInitialize
> (csr_matrix.c:91)
> ==8404== by 0x158732D: hypre_ParCSRMatrixInitialize
> (par_csr_matrix.c:200)
> ==8404== by 0x14DB366: hypre_IJMatrixInitializeParCSR
> (IJMatrix_parcsr.c:272)
> ==8404== by 0x14D8D44: HYPRE_IJMatrixInitialize
> (HYPRE_IJMatrix.c:303)
> ==8404== by 0x11A7FFF:
> MatHYPRE_IJMatrixFastCopy_MPIAIJ(_p_Mat*,
> hypre_IJMatrix_struct*) (mhyp.c:211)
> ==8404== by 0x11A4BFD: MatHYPRE_IJMatrixCopy(_p_Mat*,
> hypre_IJMatrix_struct*) (mhyp.c:122)
> ==8404== by 0xAFE3DC: PCSetUp_HYPRE(_p_PC*) (hypre.c:118)
> ==8404== by 0x12293CE: PCSetUp(_p_PC*) (precon.c:832)
> ==8404== by 0xC1D524: KSPSetUp(_p_KSP*) (itfunc.c:278)
> ==8404==
> ==8404== Conditional jump or move depends on uninitialised
> value(s)
> ==8404== at 0x74ADDAE: _int_malloc (mvapich_malloc.c:4116)
> ==8404== by 0x74B2189: calloc (mvapich_malloc.c:3765)
> ==8404== by 0x1623FF2: hypre_CAlloc (hypre_memory.c:121)
> ==8404== by 0x15B3AA1: hypre_CSRMatrixInitialize
> (csr_matrix.c:91)
> ==8404== by 0x158732D: hypre_ParCSRMatrixInitialize
> (par_csr_matrix.c:200)
> ==8404== by 0x14DB366: hypre_IJMatrixInitializeParCSR
> (IJMatrix_parcsr.c:272)
> ==8404== by 0x14D8D44: HYPRE_IJMatrixInitialize
> (HYPRE_IJMatrix.c:303)
> ==8404== by 0x11A7FFF:
> MatHYPRE_IJMatrixFastCopy_MPIAIJ(_p_Mat*,
> hypre_IJMatrix_struct*) (mhyp.c:211)
> ==8404== by 0x11A4BFD: MatHYPRE_IJMatrixCopy(_p_Mat*,
> hypre_IJMatrix_struct*) (mhyp.c:122)
> ==8404== by 0xAFE3DC: PCSetUp_HYPRE(_p_PC*) (hypre.c:118)
> ==8404== by 0x12293CE: PCSetUp(_p_PC*) (precon.c:832)
> ==8404== by 0xC1D524: KSPSetUp(_p_KSP*) (itfunc.c:278)
> ==8404==
> ==8404== Conditional jump or move depends on uninitialised
> value(s)
> ==8404== at 0x74ADDD9: _int_malloc (mvapich_malloc.c:4122)
> ==8404== by 0x74B2189: calloc (mvapich_malloc.c:3765)
> ==8404== by 0x1623FF2: hypre_CAlloc (hypre_memory.c:121)
> ==8404== by 0x15B3AA1: hypre_CSRMatrixInitialize
> (csr_matrix.c:91)
> ==8404== by 0x158732D: hypre_ParCSRMatrixInitialize
> (par_csr_matrix.c:200)
> ==8404== by 0x14DB366: hypre_IJMatrixInitializeParCSR
> (IJMatrix_parcsr.c:272)
> ==8404== by 0x14D8D44: HYPRE_IJMatrixInitialize
> (HYPRE_IJMatrix.c:303)
> ==8404== by 0x11A7FFF:
> MatHYPRE_IJMatrixFastCopy_MPIAIJ(_p_Mat*,
> hypre_IJMatrix_struct*) (mhyp.c:211)
> ==8404== by 0x11A4BFD: MatHYPRE_IJMatrixCopy(_p_Mat*,
> hypre_IJMatrix_struct*) (mhyp.c:122)
> ==8404== by 0xAFE3DC: PCSetUp_HYPRE(_p_PC*) (hypre.c:118)
> ==8404== by 0x12293CE: PCSetUp(_p_PC*) (precon.c:832)
> ==8404== by 0xC1D524: KSPSetUp(_p_KSP*) (itfunc.c:278)
> ==8404==
> ==8404== Conditional jump or move depends on uninitialised
> value(s)
> ==8404== at 0x74ADDEC: _int_malloc (mvapich_malloc.c:4122)
> ==8404== by 0x74B2189: calloc (mvapich_malloc.c:3765)
> ==8404== by 0x1623FF2: hypre_CAlloc (hypre_memory.c:121)
> ==8404== by 0x15B3AA1: hypre_CSRMatrixInitialize
> (csr_matrix.c:91)
> ==8404== by 0x158732D: hypre_ParCSRMatrixInitialize
> (par_csr_matrix.c:200)
> ==8404== by 0x14DB366: hypre_IJMatrixInitializeParCSR
> (IJMatrix_parcsr.c:272)
> ==8404== by 0x14D8D44: HYPRE_IJMatrixInitialize
> (HYPRE_IJMatrix.c:303)
> ==8404== by 0x11A7FFF:
> MatHYPRE_IJMatrixFastCopy_MPIAIJ(_p_Mat*,
> hypre_IJMatrix_struct*) (mhyp.c:211)
> ==8404== by 0x11A4BFD: MatHYPRE_IJMatrixCopy(_p_Mat*,
> hypre_IJMatrix_struct*) (mhyp.c:122)
> ==8404== by 0xAFE3DC: PCSetUp_HYPRE(_p_PC*) (hypre.c:118)
> ==8404== by 0x12293CE: PCSetUp(_p_PC*) (precon.c:832)
> ==8404== by 0xC1D524: KSPSetUp(_p_KSP*) (itfunc.c:278)
> ==8404==
> ==8404== Conditional jump or move depends on uninitialised
> value(s)
> ==8404== at 0x74ADDFF: _int_malloc (mvapich_malloc.c:4122)
> ==8404== by 0x74B2189: calloc (mvapich_malloc.c:3765)
> ==8404== by 0x1623FF2: hypre_CAlloc (hypre_memory.c:121)
> ==8404== by 0x15B3AA1: hypre_CSRMatrixInitialize
> (csr_matrix.c:91)
> ==8404== by 0x158732D: hypre_ParCSRMatrixInitialize
> (par_csr_matrix.c:200)
> ==8404== by 0x14DB366: hypre_IJMatrixInitializeParCSR
> (IJMatrix_parcsr.c:272)
> ==8404== by 0x14D8D44: HYPRE_IJMatrixInitialize
> (HYPRE_IJMatrix.c:303)
> ==8404== by 0x11A7FFF:
> MatHYPRE_IJMatrixFastCopy_MPIAIJ(_p_Mat*,
> hypre_IJMatrix_struct*) (mhyp.c:211)
> ==8404== by 0x11A4BFD: MatHYPRE_IJMatrixCopy(_p_Mat*,
> hypre_IJMatrix_struct*) (mhyp.c:122)
> ==8404== by 0xAFE3DC: PCSetUp_HYPRE(_p_PC*) (hypre.c:118)
> ==8404== by 0x12293CE: PCSetUp(_p_PC*) (precon.c:832)
> ==8404== by 0xC1D524: KSPSetUp(_p_KSP*) (itfunc.c:278)
> ==8404==
> ==8404== Conditional jump or move depends on uninitialised
> value(s)
> ==8404== at 0x74ADE12: _int_malloc (mvapich_malloc.c:4122)
> ==8404== by 0x74B2189: calloc (mvapich_malloc.c:3765)
> ==8404== by 0x1623FF2: hypre_CAlloc (hypre_memory.c:121)
> ==8404== by 0x15B3AA1: hypre_CSRMatrixInitialize
> (csr_matrix.c:91)
> ==8404== by 0x158732D: hypre_ParCSRMatrixInitialize
> (par_csr_matrix.c:200)
> ==8404== by 0x14DB366: hypre_IJMatrixInitializeParCSR
> (IJMatrix_parcsr.c:272)
> ==8404== by 0x14D8D44: HYPRE_IJMatrixInitialize
> (HYPRE_IJMatrix.c:303)
> ==8404== by 0x11A7FFF:
> MatHYPRE_IJMatrixFastCopy_MPIAIJ(_p_Mat*,
> hypre_IJMatrix_struct*) (mhyp.c:211)
> ==8404== by 0x11A4BFD: MatHYPRE_IJMatrixCopy(_p_Mat*,
> hypre_IJMatrix_struct*) (mhyp.c:122)
> ==8404== by 0xAFE3DC: PCSetUp_HYPRE(_p_PC*) (hypre.c:118)
> ==8404== by 0x12293CE: PCSetUp(_p_PC*) (precon.c:832)
> ==8404== by 0xC1D524: KSPSetUp(_p_KSP*) (itfunc.c:278)
> ==8404==
> ==8404== Use of uninitialised value of size 8
> ==8404== at 0x74ADE42: _int_malloc (mvapich_malloc.c:4124)
> ==8404== by 0x74B2189: calloc (mvapich_malloc.c:3765)
> ==8404== by 0x1623FF2: hypre_CAlloc (hypre_memory.c:121)
> ==8404== by 0x15B3AA1: hypre_CSRMatrixInitialize
> (csr_matrix.c:91)
> ==8404== by 0x158732D: hypre_ParCSRMatrixInitialize
> (par_csr_matrix.c:200)
> ==8404== by 0x14DB366: hypre_IJMatrixInitializeParCSR
> (IJMatrix_parcsr.c:272)
> ==8404== by 0x14D8D44: HYPRE_IJMatrixInitialize
> (HYPRE_IJMatrix.c:303)
> ==8404== by 0x11A7FFF:
> MatHYPRE_IJMatrixFastCopy_MPIAIJ(_p_Mat*,
> hypre_IJMatrix_struct*) (mhyp.c:211)
> ==8404== by 0x11A4BFD: MatHYPRE_IJMatrixCopy(_p_Mat*,
> hypre_IJMatrix_struct*) (mhyp.c:122)
> ==8404== by 0xAFE3DC: PCSetUp_HYPRE(_p_PC*) (hypre.c:118)
> ==8404== by 0x12293CE: PCSetUp(_p_PC*) (precon.c:832)
> ==8404== by 0xC1D524: KSPSetUp(_p_KSP*) (itfunc.c:278)
> ==8404==
> ==8404== Conditional jump or move depends on uninitialised
> value(s)
> ==8404== at 0x74ADE4C: _int_malloc (mvapich_malloc.c:4126)
> ==8404== by 0x74B2189: calloc (mvapich_malloc.c:3765)
> ==8404== by 0x1623FF2: hypre_CAlloc (hypre_memory.c:121)
> ==8404== by 0x15B3AA1: hypre_CSRMatrixInitialize
> (csr_matrix.c:91)
> ==8404== by 0x158732D: hypre_ParCSRMatrixInitialize
> (par_csr_matrix.c:200)
> ==8404== by 0x14DB366: hypre_IJMatrixInitializeParCSR
> (IJMatrix_parcsr.c:272)
> ==8404== by 0x14D8D44: HYPRE_IJMatrixInitialize
> (HYPRE_IJMatrix.c:303)
> ==8404== by 0x11A7FFF:
> MatHYPRE_IJMatrixFastCopy_MPIAIJ(_p_Mat*,
> hypre_IJMatrix_struct*) (mhyp.c:211)
> ==8404== by 0x11A4BFD: MatHYPRE_IJMatrixCopy(_p_Mat*,
> hypre_IJMatrix_struct*) (mhyp.c:122)
> ==8404== by 0xAFE3DC: PCSetUp_HYPRE(_p_PC*) (hypre.c:118)
> ==8404== by 0x12293CE: PCSetUp(_p_PC*) (precon.c:832)
> ==8404== by 0xC1D524: KSPSetUp(_p_KSP*) (itfunc.c:278)
> ==8404==
> ==8404== Use of uninitialised value of size 8
> ==8404== at 0x74ADE88: _int_malloc (mvapich_malloc.c:4148)
> ==8404== by 0x74B2189: calloc (mvapich_malloc.c:3765)
> ==8404== by 0x1623FF2: hypre_CAlloc (hypre_memory.c:121)
> ==8404== by 0x15B3AA1: hypre_CSRMatrixInitialize
> (csr_matrix.c:91)
> ==8404== by 0x158732D: hypre_ParCSRMatrixInitialize
> (par_csr_matrix.c:200)
> ==8404== by 0x14DB366: hypre_IJMatrixInitializeParCSR
> (IJMatrix_parcsr.c:272)
> ==8404== by 0x14D8D44: HYPRE_IJMatrixInitialize
> (HYPRE_IJMatrix.c:303)
> ==8404== by 0x11A7FFF:
> MatHYPRE_IJMatrixFastCopy_MPIAIJ(_p_Mat*,
> hypre_IJMatrix_struct*) (mhyp.c:211)
> ==8404== by 0x11A4BFD: MatHYPRE_IJMatrixCopy(_p_Mat*,
> hypre_IJMatrix_struct*) (mhyp.c:122)
> ==8404== by 0xAFE3DC: PCSetUp_HYPRE(_p_PC*) (hypre.c:118)
> ==8404== by 0x12293CE: PCSetUp(_p_PC*) (precon.c:832)
> ==8404== by 0xC1D524: KSPSetUp(_p_KSP*) (itfunc.c:278)
> ==8404==
> ==8404== Use of uninitialised value of size 8
> ==8404== at 0x74ADE9C: _int_malloc (mvapich_malloc.c:4152)
> ==8404== by 0x74B2189: calloc (mvapich_malloc.c:3765)
> ==8404== by 0x1623FF2: hypre_CAlloc (hypre_memory.c:121)
> ==8404== by 0x15B3AA1: hypre_CSRMatrixInitialize
> (csr_matrix.c:91)
> ==8404== by 0x158732D: hypre_ParCSRMatrixInitialize
> (par_csr_matrix.c:200)
> ==8404== by 0x14DB366: hypre_IJMatrixInitializeParCSR
> (IJMatrix_parcsr.c:272)
> ==8404== by 0x14D8D44: HYPRE_IJMatrixInitialize
> (HYPRE_IJMatrix.c:303)
> ==8404== by 0x11A7FFF:
> MatHYPRE_IJMatrixFastCopy_MPIAIJ(_p_Mat*,
> hypre_IJMatrix_struct*) (mhyp.c:211)
> ==8404== by 0x11A4BFD: MatHYPRE_IJMatrixCopy(_p_Mat*,
> hypre_IJMatrix_struct*) (mhyp.c:122)
> ==8404== by 0xAFE3DC: PCSetUp_HYPRE(_p_PC*) (hypre.c:118)
> ==8404== by 0x12293CE: PCSetUp(_p_PC*) (precon.c:832)
> ==8404== by 0xC1D524: KSPSetUp(_p_KSP*) (itfunc.c:278)
> ==8404==
> ==8404== Use of uninitialised value of size 8
> ==8404== at 0x74AE1E7: _int_malloc (mvapich_malloc.c:4170)
> ==8404== by 0x74B2189: calloc (mvapich_malloc.c:3765)
> ==8404== by 0x1623FF2: hypre_CAlloc (hypre_memory.c:121)
> ==8404== by 0x15B3B06: hypre_CSRMatrixInitialize
> (csr_matrix.c:97)
> ==8404== by 0x158732D: hypre_ParCSRMatrixInitialize
> (par_csr_matrix.c:200)
> ==8404== by 0x14DB366: hypre_IJMatrixInitializeParCSR
> (IJMatrix_parcsr.c:272)
> ==8404== by 0x14D8D44: HYPRE_IJMatrixInitialize
> (HYPRE_IJMatrix.c:303)
> ==8404== by 0x11A7FFF:
> MatHYPRE_IJMatrixFastCopy_MPIAIJ(_p_Mat*,
> hypre_IJMatrix_struct*) (mhyp.c:211)
> ==8404== by 0x11A4BFD: MatHYPRE_IJMatrixCopy(_p_Mat*,
> hypre_IJMatrix_struct*) (mhyp.c:122)
> ==8404== by 0xAFE3DC: PCSetUp_HYPRE(_p_PC*) (hypre.c:118)
> ==8404== by 0x12293CE: PCSetUp(_p_PC*) (precon.c:832)
> ==8404== by 0xC1D524: KSPSetUp(_p_KSP*) (itfunc.c:278)
> ==8404==
> ==8404== Conditional jump or move depends on uninitialised
> value(s)
> ==8404== at 0x74AE1EF: _int_malloc (mvapich_malloc.c:4173)
> ==8404== by 0x74B2189: calloc (mvapich_malloc.c:3765)
> ==8404== by 0x1623FF2: hypre_CAlloc (hypre_memory.c:121)
> ==8404== by 0x15B3B06: hypre_CSRMatrixInitialize
> (csr_matrix.c:97)
> ==8404== by 0x158732D: hypre_ParCSRMatrixInitialize
> (par_csr_matrix.c:200)
> ==8404== by 0x14DB366: hypre_IJMatrixInitializeParCSR
> (IJMatrix_parcsr.c:272)
> ==8404== by 0x14D8D44: HYPRE_IJMatrixInitialize
> (HYPRE_IJMatrix.c:303)
> ==8404== by 0x11A7FFF:
> MatHYPRE_IJMatrixFastCopy_MPIAIJ(_p_Mat*,
> hypre_IJMatrix_struct*) (mhyp.c:211)
> ==8404== by 0x11A4BFD: MatHYPRE_IJMatrixCopy(_p_Mat*,
> hypre_IJMatrix_struct*) (mhyp.c:122)
> ==8404== by 0xAFE3DC: PCSetUp_HYPRE(_p_PC*) (hypre.c:118)
> ==8404== by 0x12293CE: PCSetUp(_p_PC*) (precon.c:832)
> ==8404== by 0xC1D524: KSPSetUp(_p_KSP*) (itfunc.c:278)
> ==8404==
> ==8404== Use of uninitialised value of size 8
> ==8404== at 0x74AE266: _int_malloc (mvapich_malloc.c:4188)
> ==8404== by 0x74B2189: calloc (mvapich_malloc.c:3765)
> ==8404== by 0x1623FF2: hypre_CAlloc (hypre_memory.c:121)
> ==8404== by 0x15B3B06: hypre_CSRMatrixInitialize
> (csr_matrix.c:97)
> ==8404== by 0x158732D: hypre_ParCSRMatrixInitialize
> (par_csr_matrix.c:200)
> ==8404== by 0x14DB366: hypre_IJMatrixInitializeParCSR
> (IJMatrix_parcsr.c:272)
> ==8404== by 0x14D8D44: HYPRE_IJMatrixInitialize
> (HYPRE_IJMatrix.c:303)
> ==8404== by 0x11A7FFF:
> MatHYPRE_IJMatrixFastCopy_MPIAIJ(_p_Mat*,
> hypre_IJMatrix_struct*) (mhyp.c:211)
> ==8404== by 0x11A4BFD: MatHYPRE_IJMatrixCopy(_p_Mat*,
> hypre_IJMatrix_struct*) (mhyp.c:122)
> ==8404== by 0xAFE3DC: PCSetUp_HYPRE(_p_PC*) (hypre.c:118)
> ==8404== by 0x12293CE: PCSetUp(_p_PC*) (precon.c:832)
> ==8404== by 0xC1D524: KSPSetUp(_p_KSP*) (itfunc.c:278)
> ==8404==
> ==8404== Conditional jump or move depends on uninitialised
> value(s)
> ==8404== at 0x74ADF87: _int_malloc (mvapich_malloc.c:4237)
> ==8404== by 0x74B2189: calloc (mvapich_malloc.c:3765)
> ==8404== by 0x1623FF2: hypre_CAlloc (hypre_memory.c:121)
> ==8404== by 0x1626536: hypre_AuxParCSRMatrixInitialize
> (aux_parcsr_matrix.c:177)
> ==8404== by 0x14DB372: hypre_IJMatrixInitializeParCSR
> (IJMatrix_parcsr.c:273)
> ==8404== by 0x14D8D44: HYPRE_IJMatrixInitialize
> (HYPRE_IJMatrix.c:303)
> ==8404== by 0x11A7FFF:
> MatHYPRE_IJMatrixFastCopy_MPIAIJ(_p_Mat*,
> hypre_IJMatrix_struct*) (mhyp.c:211)
> ==8404== by 0x11A4BFD: MatHYPRE_IJMatrixCopy(_p_Mat*,
> hypre_IJMatrix_struct*) (mhyp.c:122)
> ==8404== by 0xAFE3DC: PCSetUp_HYPRE(_p_PC*) (hypre.c:118)
> ==8404== by 0x12293CE: PCSetUp(_p_PC*) (precon.c:832)
> ==8404== by 0xC1D524: KSPSetUp(_p_KSP*) (itfunc.c:278)
> ==8404== by 0xC1EFD9: KSPSolve(_p_KSP*, _p_Vec*,
> _p_Vec*) (itfunc.c:402)
> ==8404==
> ==8404== Conditional jump or move depends on uninitialised
> value(s)
> ==8404== at 0x74ADECC: _int_malloc (mvapich_malloc.c:4165)
> ==8404== by 0x74B2189: calloc (mvapich_malloc.c:3765)
> ==8404== by 0x1623FF2: hypre_CAlloc (hypre_memory.c:121)
> ==8404== by 0x15B62C5: hypre_SeqVectorInitialize
> (vector.c:94)
> ==8404== by 0x158CF25: hypre_ParVectorInitialize
> (par_vector.c:150)
> ==8404== by 0x14ECF47: hypre_BoomerAMGSetup
> (par_amg_setup.c:464)
> ==8404== by 0x14E2EA6: HYPRE_BoomerAMGSetup
> (HYPRE_parcsr_amg.c:58)
> ==8404== by 0xAFF31D: PCSetUp_HYPRE(_p_PC*) (hypre.c:122)
> ==8404== by 0x12293CE: PCSetUp(_p_PC*) (precon.c:832)
> ==8404== by 0xC1D524: KSPSetUp(_p_KSP*) (itfunc.c:278)
> ==8404== by 0xC1EFD9: KSPSolve(_p_KSP*, _p_Vec*,
> _p_Vec*) (itfunc.c:402)
> ==8404== by 0x46C59F:
> PetscLinearSolver::solve(ArrayV<double>&, PetscBool)
> (petscLinearSolver.cpp:402)
> ==8404==
> ==8404== Conditional jump or move depends on uninitialised
> value(s)
> ==8404== at 0x74ADF72: _int_malloc (mvapich_malloc.c:4227)
> ==8404== by 0x74B2189: calloc (mvapich_malloc.c:3765)
> ==8404== by 0x1623FF2: hypre_CAlloc (hypre_memory.c:121)
> ==8404== by 0x14FC3F9: hypre_BoomerAMGCoarsenRuge
> (par_coarsen.c:940)
> ==8404== by 0x14FF1EE: hypre_BoomerAMGCoarsenFalgout
> (par_coarsen.c:1918)
> ==8404== by 0x14EDE45: hypre_BoomerAMGSetup
> (par_amg_setup.c:758)
> ==8404== by 0x14E2EA6: HYPRE_BoomerAMGSetup
> (HYPRE_parcsr_amg.c:58)
> ==8404== by 0xAFF31D: PCSetUp_HYPRE(_p_PC*) (hypre.c:122)
> ==8404== by 0x12293CE: PCSetUp(_p_PC*) (precon.c:832)
> ==8404== by 0xC1D524: KSPSetUp(_p_KSP*) (itfunc.c:278)
> ==8404== by 0xC1EFD9: KSPSolve(_p_KSP*, _p_Vec*,
> _p_Vec*) (itfunc.c:402)
> ==8404== by 0x46C59F:
> PetscLinearSolver::solve(ArrayV<double>&, PetscBool)
> (petscLinearSolver.cpp:402)
> ==8404==
> ==8404== Conditional jump or move depends on uninitialised
> value(s)
> ==8404== at 0x74ADF7E: _int_malloc (mvapich_malloc.c:4227)
> ==8404== by 0x74B2189: calloc (mvapich_malloc.c:3765)
> ==8404== by 0x1623FF2: hypre_CAlloc (hypre_memory.c:121)
> ==8404== by 0x14FC3F9: hypre_BoomerAMGCoarsenRuge
> (par_coarsen.c:940)
> ==8404== by 0x14FF1EE: hypre_BoomerAMGCoarsenFalgout
> (par_coarsen.c:1918)
> ==8404== by 0x14EDE45: hypre_BoomerAMGSetup
> (par_amg_setup.c:758)
> ==8404== by 0x14E2EA6: HYPRE_BoomerAMGSetup
> (HYPRE_parcsr_amg.c:58)
> ==8404== by 0xAFF31D: PCSetUp_HYPRE(_p_PC*) (hypre.c:122)
> ==8404== by 0x12293CE: PCSetUp(_p_PC*) (precon.c:832)
> ==8404== by 0xC1D524: KSPSetUp(_p_KSP*) (itfunc.c:278)
> ==8404== by 0xC1EFD9: KSPSolve(_p_KSP*, _p_Vec*,
> _p_Vec*) (itfunc.c:402)
> ==8404== by 0x46C59F:
> PetscLinearSolver::solve(ArrayV<double>&, PetscBool)
> (petscLinearSolver.cpp:402)
> ==8404==
> ==8404== Use of uninitialised value of size 8
> ==8404== at 0x74AE293: _int_malloc (mvapich_malloc.c:4254)
> ==8404== by 0x74B2189: calloc (mvapich_malloc.c:3765)
> ==8404== by 0x1623FF2: hypre_CAlloc (hypre_memory.c:121)
> ==8404== by 0x153D557:
> hypre_BoomerAMGBuildCoarseOperator (par_rap.c:1012)
> ==8404== by 0x14F1CCB: hypre_BoomerAMGSetup
> (par_amg_setup.c:1650)
> ==8404== by 0x14E2EA6: HYPRE_BoomerAMGSetup
> (HYPRE_parcsr_amg.c:58)
> ==8404== by 0xAFF31D: PCSetUp_HYPRE(_p_PC*) (hypre.c:122)
> ==8404== by 0x12293CE: PCSetUp(_p_PC*) (precon.c:832)
> ==8404== by 0xC1D524: KSPSetUp(_p_KSP*) (itfunc.c:278)
> ==8404== by 0xC1EFD9: KSPSolve(_p_KSP*, _p_Vec*,
> _p_Vec*) (itfunc.c:402)
> ==8404== by 0x46C59F:
> PetscLinearSolver::solve(ArrayV<double>&, PetscBool)
> (petscLinearSolver.cpp:402)
> ==8404== by 0x472A92:
> amr2D::fvm::pbSolver::SolveNonLinearPB(double, int)
> (pbSolver_2d_FVM.cpp:148)
> ==8404==
> ==8404== Conditional jump or move depends on uninitialised
> value(s)
> ==8404== at 0x74AE29B: _int_malloc (mvapich_malloc.c:4257)
> ==8404== by 0x74B2189: calloc (mvapich_malloc.c:3765)
> ==8404== by 0x1623FF2: hypre_CAlloc (hypre_memory.c:121)
> ==8404== by 0x153D557:
> hypre_BoomerAMGBuildCoarseOperator (par_rap.c:1012)
> ==8404== by 0x14F1CCB: hypre_BoomerAMGSetup
> (par_amg_setup.c:1650)
> ==8404== by 0x14E2EA6: HYPRE_BoomerAMGSetup
> (HYPRE_parcsr_amg.c:58)
> ==8404== by 0xAFF31D: PCSetUp_HYPRE(_p_PC*) (hypre.c:122)
> ==8404== by 0x12293CE: PCSetUp(_p_PC*) (precon.c:832)
> ==8404== by 0xC1D524: KSPSetUp(_p_KSP*) (itfunc.c:278)
> ==8404== by 0xC1EFD9: KSPSolve(_p_KSP*, _p_Vec*,
> _p_Vec*) (itfunc.c:402)
> ==8404== by 0x46C59F:
> PetscLinearSolver::solve(ArrayV<double>&, PetscBool)
> (petscLinearSolver.cpp:402)
> ==8404== by 0x472A92:
> amr2D::fvm::pbSolver::SolveNonLinearPB(double, int)
> (pbSolver_2d_FVM.cpp:148)
> ==8404==
> ==8404== Use of uninitialised value of size 8
> ==8404== at 0x74AE327: _int_malloc (mvapich_malloc.c:4278)
> ==8404== by 0x74B2189: calloc (mvapich_malloc.c:3765)
> ==8404== by 0x1623FF2: hypre_CAlloc (hypre_memory.c:121)
> ==8404== by 0x153D557:
> hypre_BoomerAMGBuildCoarseOperator (par_rap.c:1012)
> ==8404== by 0x14F1CCB: hypre_BoomerAMGSetup
> (par_amg_setup.c:1650)
> ==8404== by 0x14E2EA6: HYPRE_BoomerAMGSetup
> (HYPRE_parcsr_amg.c:58)
> ==8404== by 0xAFF31D: PCSetUp_HYPRE(_p_PC*) (hypre.c:122)
> ==8404== by 0x12293CE: PCSetUp(_p_PC*) (precon.c:832)
> ==8404== by 0xC1D524: KSPSetUp(_p_KSP*) (itfunc.c:278)
> ==8404== by 0xC1EFD9: KSPSolve(_p_KSP*, _p_Vec*,
> _p_Vec*) (itfunc.c:402)
> ==8404== by 0x46C59F:
> PetscLinearSolver::solve(ArrayV<double>&, PetscBool)
> (petscLinearSolver.cpp:402)
> ==8404== by 0x472A92:
> amr2D::fvm::pbSolver::SolveNonLinearPB(double, int)
> (pbSolver_2d_FVM.cpp:148)
> ==8404==
> ==8404== Use of uninitialised value of size 8
> ==8404== at 0x74ADE4E: _int_malloc (mvapich_malloc.c:4129)
> ==8404== by 0x74B2189: calloc (mvapich_malloc.c:3765)
> ==8404== by 0x1623FF2: hypre_CAlloc (hypre_memory.c:121)
> ==8404== by 0x153DAD9:
> hypre_BoomerAMGBuildCoarseOperator (par_rap.c:1122)
> ==8404== by 0x14F1CCB: hypre_BoomerAMGSetup
> (par_amg_setup.c:1650)
> ==8404== by 0x14E2EA6: HYPRE_BoomerAMGSetup
> (HYPRE_parcsr_amg.c:58)
> ==8404== by 0xAFF31D: PCSetUp_HYPRE(_p_PC*) (hypre.c:122)
> ==8404== by 0x12293CE: PCSetUp(_p_PC*) (precon.c:832)
> ==8404== by 0xC1D524: KSPSetUp(_p_KSP*) (itfunc.c:278)
> ==8404== by 0xC1EFD9: KSPSolve(_p_KSP*, _p_Vec*,
> _p_Vec*) (itfunc.c:402)
> ==8404== by 0x46C59F:
> PetscLinearSolver::solve(ArrayV<double>&, PetscBool)
> (petscLinearSolver.cpp:402)
> ==8404== by 0x472A92:
> amr2D::fvm::pbSolver::SolveNonLinearPB(double, int)
> (pbSolver_2d_FVM.cpp:148)
> ==8404==
> ==8404== Conditional jump or move depends on uninitialised
> value(s)
> ==8404== at 0x74ADE56: _int_malloc (mvapich_malloc.c:4129)
> ==8404== by 0x74B2189: calloc (mvapich_malloc.c:3765)
> ==8404== by 0x1623FF2: hypre_CAlloc (hypre_memory.c:121)
> ==8404== by 0x153DAD9:
> hypre_BoomerAMGBuildCoarseOperator (par_rap.c:1122)
> ==8404== by 0x14F1CCB: hypre_BoomerAMGSetup
> (par_amg_setup.c:1650)
> ==8404== by 0x14E2EA6: HYPRE_BoomerAMGSetup
> (HYPRE_parcsr_amg.c:58)
> ==8404== by 0xAFF31D: PCSetUp_HYPRE(_p_PC*) (hypre.c:122)
> ==8404== by 0x12293CE: PCSetUp(_p_PC*) (precon.c:832)
> ==8404== by 0xC1D524: KSPSetUp(_p_KSP*) (itfunc.c:278)
> ==8404== by 0xC1EFD9: KSPSolve(_p_KSP*, _p_Vec*,
> _p_Vec*) (itfunc.c:402)
> ==8404== by 0x46C59F:
> PetscLinearSolver::solve(ArrayV<double>&, PetscBool)
> (petscLinearSolver.cpp:402)
> ==8404== by 0x472A92:
> amr2D::fvm::pbSolver::SolveNonLinearPB(double, int)
> (pbSolver_2d_FVM.cpp:148)
> ==8404==
> ==8404== Use of uninitialised value of size 8
> ==8404== at 0x74ADE98: _int_malloc (mvapich_malloc.c:4151)
> ==8404== by 0x74B2189: calloc (mvapich_malloc.c:3765)
> ==8404== by 0x1623FF2: hypre_CAlloc (hypre_memory.c:121)
> ==8404== by 0x153DAD9:
> hypre_BoomerAMGBuildCoarseOperator (par_rap.c:1122)
> ==8404== by 0x14F1CCB: hypre_BoomerAMGSetup
> (par_amg_setup.c:1650)
> ==8404== by 0x14E2EA6: HYPRE_BoomerAMGSetup
> (HYPRE_parcsr_amg.c:58)
> ==8404== by 0xAFF31D: PCSetUp_HYPRE(_p_PC*) (hypre.c:122)
> ==8404== by 0x12293CE: PCSetUp(_p_PC*) (precon.c:832)
> ==8404== by 0xC1D524: KSPSetUp(_p_KSP*) (itfunc.c:278)
> ==8404== by 0xC1EFD9: KSPSolve(_p_KSP*, _p_Vec*,
> _p_Vec*) (itfunc.c:402)
> ==8404== by 0x46C59F:
> PetscLinearSolver::solve(ArrayV<double>&, PetscBool)
> (petscLinearSolver.cpp:402)
> ==8404== by 0x472A92:
> amr2D::fvm::pbSolver::SolveNonLinearPB(double, int)
> (pbSolver_2d_FVM.cpp:148)
> ==8404==
> ==8404== Use of uninitialised value of size 8
> ==8404== at 0x74AD771: _int_free (mvapich_malloc.c:4406)
> ==8404== by 0x74AF651: free (mvapich_malloc.c:3497)
> ==8404== by 0x16240BA: hypre_Free (hypre_memory.c:196)
> ==8404== by 0x153F2EA:
> hypre_BoomerAMGBuildCoarseOperator (par_rap.c:1685)
> ==8404== by 0x14F1CCB: hypre_BoomerAMGSetup
> (par_amg_setup.c:1650)
> ==8404== by 0x14E2EA6: HYPRE_BoomerAMGSetup
> (HYPRE_parcsr_amg.c:58)
> ==8404== by 0xAFF31D: PCSetUp_HYPRE(_p_PC*) (hypre.c:122)
> ==8404== by 0x12293CE: PCSetUp(_p_PC*) (precon.c:832)
> ==8404== by 0xC1D524: KSPSetUp(_p_KSP*) (itfunc.c:278)
> ==8404== by 0xC1EFD9: KSPSolve(_p_KSP*, _p_Vec*,
> _p_Vec*) (itfunc.c:402)
> ==8404== by 0x46C59F:
> PetscLinearSolver::solve(ArrayV<double>&, PetscBool)
> (petscLinearSolver.cpp:402)
> ==8404== by 0x472A92:
> amr2D::fvm::pbSolver::SolveNonLinearPB(double, int)
> (pbSolver_2d_FVM.cpp:148)
> ==8404==
> ==8404== Conditional jump or move depends on uninitialised
> value(s)
> ==8404== at 0x74ADF56: _int_malloc (mvapich_malloc.c:4220)
> ==8404== by 0x74B2189: calloc (mvapich_malloc.c:3765)
> ==8404== by 0x1623FF2: hypre_CAlloc (hypre_memory.c:121)
> ==8404== by 0x1586F83: hypre_ParCSRMatrixCreate
> (par_csr_matrix.c:60)
> ==8404== by 0x1554BE0: hypre_BoomerAMGCreateS
> (par_strength.c:156)
> ==8404== by 0x14EDD1B: hypre_BoomerAMGSetup
> (par_amg_setup.c:736)
> ==8404== by 0x14E2EA6: HYPRE_BoomerAMGSetup
> (HYPRE_parcsr_amg.c:58)
> ==8404== by 0xAFF31D: PCSetUp_HYPRE(_p_PC*) (hypre.c:122)
> ==8404== by 0x12293CE: PCSetUp(_p_PC*) (precon.c:832)
> ==8404== by 0xC1D524: KSPSetUp(_p_KSP*) (itfunc.c:278)
> ==8404== by 0xC1EFD9: KSPSolve(_p_KSP*, _p_Vec*,
> _p_Vec*) (itfunc.c:402)
> ==8404== by 0x46C59F:
> PetscLinearSolver::solve(ArrayV<double>&, PetscBool)
> (petscLinearSolver.cpp:402)
> ==8404==
> ==8404== Use of uninitialised value of size 8
> ==8404== at 0x828313B: __intel_new_memset (in
> /opt/apps/intel/11.1/lib/intel64/libirc.so)
> ==8404== by 0x8261535: _intel_fast_memset.J (in
> /opt/apps/intel/11.1/lib/intel64/libirc.so)
> ==8404== by 0x74B221A: calloc (mvapich_malloc.c:3826)
> ==8404== by 0x1623FF2: hypre_CAlloc (hypre_memory.c:121)
> ==8404== by 0x14FC57D: hypre_BoomerAMGCoarsenRuge
> (par_coarsen.c:988)
> ==8404== by 0x14FF1EE: hypre_BoomerAMGCoarsenFalgout
> (par_coarsen.c:1918)
> ==8404== by 0x14EDE45: hypre_BoomerAMGSetup
> (par_amg_setup.c:758)
> ==8404== by 0x14E2EA6: HYPRE_BoomerAMGSetup
> (HYPRE_parcsr_amg.c:58)
> ==8404== by 0xAFF31D: PCSetUp_HYPRE(_p_PC*) (hypre.c:122)
> ==8404== by 0x12293CE: PCSetUp(_p_PC*) (precon.c:832)
> ==8404== by 0xC1D524: KSPSetUp(_p_KSP*) (itfunc.c:278)
> ==8404== by 0xC1EFD9: KSPSolve(_p_KSP*, _p_Vec*,
> _p_Vec*) (itfunc.c:402)
> ==8404==
> ==8404== Use of uninitialised value of size 8
> ==8404== at 0x8283145: __intel_new_memset (in
> /opt/apps/intel/11.1/lib/intel64/libirc.so)
> ==8404== by 0x8261535: _intel_fast_memset.J (in
> /opt/apps/intel/11.1/lib/intel64/libirc.so)
> ==8404== by 0x74B221A: calloc (mvapich_malloc.c:3826)
> ==8404== by 0x1623FF2: hypre_CAlloc (hypre_memory.c:121)
> ==8404== by 0x153E2B7:
> hypre_BoomerAMGBuildCoarseOperator (par_rap.c:1354)
> ==8404== by 0x14F1CCB: hypre_BoomerAMGSetup
> (par_amg_setup.c:1650)
> ==8404== by 0x14E2EA6: HYPRE_BoomerAMGSetup
> (HYPRE_parcsr_amg.c:58)
> ==8404== by 0xAFF31D: PCSetUp_HYPRE(_p_PC*) (hypre.c:122)
> ==8404== by 0x12293CE: PCSetUp(_p_PC*) (precon.c:832)
> ==8404== by 0xC1D524: KSPSetUp(_p_KSP*) (itfunc.c:278)
> ==8404== by 0xC1EFD9: KSPSolve(_p_KSP*, _p_Vec*,
> _p_Vec*) (itfunc.c:402)
> ==8404== by 0x46C59F:
> PetscLinearSolver::solve(ArrayV<double>&, PetscBool)
> (petscLinearSolver.cpp:402)
> ==8404==
> ==8404== Use of uninitialised value of size 8
> ==8404== at 0x74AE1F1: _int_malloc (mvapich_malloc.c:4174)
> ==8404== by 0x74B2189: calloc (mvapich_malloc.c:3765)
> ==8404== by 0x1623FF2: hypre_CAlloc (hypre_memory.c:121)
> ==8404== by 0x15B3457: hypre_CSRMatrixTranspose
> (csr_matop.c:354)
> ==8404== by 0x153B7B8:
> hypre_BoomerAMGBuildCoarseOperator (par_rap.c:372)
> ==8404== by 0x14F1CCB: hypre_BoomerAMGSetup
> (par_amg_setup.c:1650)
> ==8404== by 0x14E2EA6: HYPRE_BoomerAMGSetup
> (HYPRE_parcsr_amg.c:58)
> ==8404== by 0xAFF31D: PCSetUp_HYPRE(_p_PC*) (hypre.c:122)
> ==8404== by 0x12293CE: PCSetUp(_p_PC*) (precon.c:832)
> ==8404== by 0xC1D524: KSPSetUp(_p_KSP*) (itfunc.c:278)
> ==8404== by 0xC1EFD9: KSPSolve(_p_KSP*, _p_Vec*,
> _p_Vec*) (itfunc.c:402)
> ==8404== by 0x46C59F:
> PetscLinearSolver::solve(ArrayV<double>&, PetscBool)
> (petscLinearSolver.cpp:402)
> ==8404==
> ==8404== Use of uninitialised value of size 8
> ==8404== at 0x74AD77E: _int_free (mvapich_malloc.c:4409)
> ==8404== by 0x74AF651: free (mvapich_malloc.c:3497)
> ==8404== by 0x16240BA: hypre_Free (hypre_memory.c:196)
> ==8404== by 0x15B3A2F: hypre_CSRMatrixDestroy
> (csr_matrix.c:69)
> ==8404== by 0x153F6C2:
> hypre_BoomerAMGBuildCoarseOperator (par_rap.c:1767)
> ==8404== by 0x14F1CCB: hypre_BoomerAMGSetup
> (par_amg_setup.c:1650)
> ==8404== by 0x14E2EA6: HYPRE_BoomerAMGSetup
> (HYPRE_parcsr_amg.c:58)
> ==8404== by 0xAFF31D: PCSetUp_HYPRE(_p_PC*) (hypre.c:122)
> ==8404== by 0x12293CE: PCSetUp(_p_PC*) (precon.c:832)
> ==8404== by 0xC1D524: KSPSetUp(_p_KSP*) (itfunc.c:278)
> ==8404== by 0xC1EFD9: KSPSolve(_p_KSP*, _p_Vec*,
> _p_Vec*) (itfunc.c:402)
> ==8404== by 0x46C59F:
> PetscLinearSolver::solve(ArrayV<double>&, PetscBool)
> (petscLinearSolver.cpp:402)
> ==8404==
> ==8404== Use of uninitialised value of size 8
> ==8404== at 0x8283131: __intel_new_memset (in
> /opt/apps/intel/11.1/lib/intel64/libirc.so)
> ==8404== by 0x8261535: _intel_fast_memset.J (in
> /opt/apps/intel/11.1/lib/intel64/libirc.so)
> ==8404== by 0x74B221A: calloc (mvapich_malloc.c:3826)
> ==8404== by 0x1623FF2: hypre_CAlloc (hypre_memory.c:121)
> ==8404== by 0x153E2DD:
> hypre_BoomerAMGBuildCoarseOperator (par_rap.c:1355)
> ==8404== by 0x14F1CCB: hypre_BoomerAMGSetup
> (par_amg_setup.c:1650)
> ==8404== by 0x14E2EA6: HYPRE_BoomerAMGSetup
> (HYPRE_parcsr_amg.c:58)
> ==8404== by 0xAFF31D: PCSetUp_HYPRE(_p_PC*) (hypre.c:122)
> ==8404== by 0x12293CE: PCSetUp(_p_PC*) (precon.c:832)
> ==8404== by 0xC1D524: KSPSetUp(_p_KSP*) (itfunc.c:278)
> ==8404== by 0xC1EFD9: KSPSolve(_p_KSP*, _p_Vec*,
> _p_Vec*) (itfunc.c:402)
> ==8404== by 0x46C59F:
> PetscLinearSolver::solve(ArrayV<double>&, PetscBool)
> (petscLinearSolver.cpp:402)
> ==8404==
> ==8404== Conditional jump or move depends on uninitialised
> value(s)
> ==8404== at 0x74ADED9: _int_malloc (mvapich_malloc.c:4168)
> ==8404== by 0x74AEE8D: malloc (mvapich_malloc.c:3409)
> ==8404== by 0x74AFB0F: memalign (mvapich_malloc.c:3626)
> ==8404== by 0x494BF3: PetscMallocAlign(unsigned long,
> int, char const*, char const*, char const*, void**) (mal.c:30)
> ==8404== by 0x496DFD: PetscTrMallocDefault(unsigned
> long, int, char const*, char const*, char const*, void**)
> (mtr.c:190)
> ==8404== by 0xE71ECC: VecStashCreate_Private(int, int,
> VecStash*) (vecstash.c:37)
> ==8404== by 0x6145A1: VecCreate_MPI_Private(_p_Vec*,
> PetscBool, int, double const*) (pbvec.c:207)
> ==8404== by 0x613475: VecDuplicate_MPI(_p_Vec*,
> _p_Vec**) (pbvec.c:70)
> ==8404== by 0x59EF10: VecDuplicate(_p_Vec*, _p_Vec**)
> (vector.c:551)
> ==8404== by 0xC4F687: KSPDefaultConverged(_p_KSP*, int,
> double, KSPConvergedReason*, void*) (iterativ.c:585)
> ==8404== by 0xC6CB92: KSPSolve_BCGS(_p_KSP*) (bcgs.c:86)
> ==8404== by 0xC1FC32: KSPSolve(_p_KSP*, _p_Vec*,
> _p_Vec*) (itfunc.c:446)
> ==8404==
>
>
>
>
>
>
>
>
> --
> What most experimenters take for granted before they begin their
> experiments is infinitely more interesting than any results to
> which their experiments lead.
> -- Norbert Wiener
>
>
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