[petsc-users] ccgraph.c error

Sun Nov 27 12:31:36 CST 2011

Hello,

I got the following error message when I run my code.

Does anyone know what may be the problem? Thanks.

Best,
Rongliang

---------------------------------------------------------------------------------------------------
***ASSERTION failed on line 169 of file ccgraph.c: cadjwgtsum[cnvtxs] ==
idxsum(nedges, cadjwgt)
0 91 89 91 0
[850]PETSC ERROR:
------------------------------------------------------------------------
[850]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,
probably memory access out of range
[850]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
[850]PETSC ERROR: or see
http://www.mcs.anl.gov/petsc/petsc-as/documentation/faq.html#valgrind[850]PETSCERROR:
or try
http://valgrind.org on GNU/linux and Apple Mac OS X to find memory
corruption errors
[850]PETSC ERROR: configure using --with-debugging=yes, recompile, link,
and run
[850]PETSC ERROR: to get more information on the crash.
[850]PETSC ERROR: --------------------- Error Message
------------------------------------
[850]PETSC ERROR: Signal received!
[850]PETSC ERROR:
------------------------------------------------------------------------
[850]PETSC ERROR: Petsc Release Version 3.2.0, Patch 4, Sun Oct 23 12:23:18
CDT 2011
[850]PETSC ERROR: See docs/changes/index.html for recent updates.
[850]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[850]PETSC ERROR: See docs/index.html for manual pages.
[850]PETSC ERROR:
------------------------------------------------------------------------
[850]PETSC ERROR: ./joab on a Janus-nod named node1338 by ronglian Sat Nov
26 21:44:16 2011
[850]PETSC ERROR: Libraries linked from
/projects/ronglian/soft/petsc-3.2-p4/Janus-nodebug/lib
[850]PETSC ERROR: Configure run at Tue Oct 25 19:27:52 2011
[850]PETSC ERROR: Configure options --known-level1-dcache-size=32768
--known-level1-dcache-linesize=32 --known-level1-dcache-assoc=0
--known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8
--known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8
--known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8
--known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8
--known-sizeof-MPI_Fint=4 --known-mpi-long-double=1 --with-batch=1
--with-mpi-shared=1 --known-mpi-shared-libraries=0 --with-debugging=0
--download-f-blas-lapack=1 --download-parmetis=1 --download-superlu_dist=1
--download-superlu=1 --download-scalapack=1 --download-blacs=1
--download-mumps=1 --download-hypre=1
[850]PETSC ERROR:
------------------------------------------------------------------------
[850]PETSC ERROR: User provided function() line 0 in unknown directory
unknown file
--------------------------------------------------------------------------
MPI_ABORT was invoked on rank 850 in communicator MPI_COMM_WORLD
with errorcode 59.

NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
You may or may not see output from other processes, depending on
exactly when Open MPI kills them.
--------------------------------------------------------------------------
***ASSERTION failed on line 169 of file ccgraph.c: cadjwgtsum[cnvtxs] ==
idxsum(nedges, cadjwgt)
0 91 89 91 0
[986]PETSC ERROR:
------------------------------------------------------------------------
[986]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,
probably memory access out of range
[986]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
[986]PETSC ERROR: or see
http://www.mcs.anl.gov/petsc/petsc-as/documentation/faq.html#valgrind[986]PETSCERROR:
or try
http://valgrind.org on GNU/linux and Apple Mac OS X to find memory
corruption errors
[986]PETSC ERROR: configure using --with-debugging=yes, recompile, link,
and run
[986]PETSC ERROR: to get more information on the crash.
[986]PETSC ERROR: --------------------- Error Message
------------------------------------
[986]PETSC ERROR: Signal received!
[986]PETSC ERROR:
------------------------------------------------------------------------
[986]PETSC ERROR: Petsc Release Version 3.2.0, Patch 4, Sun Oct 23 12:23:18
CDT 2011
[986]PETSC ERROR: See docs/changes/index.html for recent updates.
[986]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[986]PETSC ERROR: See docs/index.html for manual pages.
[986]PETSC ERROR:
------------------------------------------------------------------------
[986]PETSC ERROR: ./joab on a Janus-nod named node1326 by ronglian Sat Nov
26 21:44:16 2011
[986]PETSC ERROR: Libraries linked from
/projects/ronglian/soft/petsc-3.2-p4/Janus-nodebug/lib
[986]PETSC ERROR: Configure run at Tue Oct 25 19:27:52 2011
[986]PETSC ERROR: Configure options --known-level1-dcache-size=32768
--known-level1-dcache-linesize=32 --known-level1-dcache-assoc=0
--known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8
--known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8
--known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8
--known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8
--known-sizeof-MPI_Fint=4 --known-mpi-long-double=1 --with-batch=1
--with-mpi-shared=1 --known-mpi-shared-libraries=0 --with-debugging=0
--download-f-blas-lapack=1 --download-parmetis=1 --download-superlu_dist=1
--download-superlu=1 --download-scalapack=1 --download-blacs=1
--download-mumps=1 --download-hypre=1
[986]PETSC ERROR:
------------------------------------------------------------------------
[986]PETSC ERROR: User provided function() line 0 in unknown directory
unknown file
***ASSERTION failed on line 169 of file ccgraph.c: cadjwgtsum[cnvtxs] ==
idxsum(nedges, cadjwgt)
0 91 89 91 0
[1409]PETSC ERROR:
------------------------------------------------------------------------
[1409]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,
probably memory access out of range
[1409]PETSC ERROR: Try option -start_in_debugger or
-on_error_attach_debugger
[1409]PETSC ERROR: or see
http://www.mcs.anl.gov/petsc/petsc-as/documentation/faq.html#valgrind[1409]PETSCERROR:
or try
http://valgrind.org on GNU/linux and Apple Mac OS X to find memory
corruption errors
[1409]PETSC ERROR: configure using --with-debugging=yes, recompile, link,
and run
[1409]PETSC ERROR: to get more information on the crash.
[1409]PETSC ERROR: --------------------- Error Message
------------------------------------
[1409]PETSC ERROR: Signal received!
[1409]PETSC ERROR:
------------------------------------------------------------------------
[1409]PETSC ERROR: Petsc Release Version 3.2.0, Patch 4, Sun Oct 23
12:23:18 CDT 2011
[1409]PETSC ERROR: See docs/changes/index.html for recent updates.
[1409]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[1409]PETSC ERROR: See docs/index.html for manual pages.
[1409]PETSC ERROR:
------------------------------------------------------------------------
[1409]PETSC ERROR: ./joab on a Janus-nod named node1268 by ronglian Sat Nov
26 21:44:16 2011
[1409]PETSC ERROR: Libraries linked from
/projects/ronglian/soft/petsc-3.2-p4/Janus-nodebug/lib
[1409]PETSC ERROR: Configure run at Tue Oct 25 19:27:52 2011
[1409]PETSC ERROR: Configure options --known-level1-dcache-size=32768
--known-level1-dcache-linesize=32 --known-level1-dcache-assoc=0
--known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8
--known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8
--known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8
--known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8
--known-sizeof-MPI_Fint=4 --known-mpi-long-double=1 --with-batch=1
--with-mpi-shared=1 --known-mpi-shared-libraries=0 --with-debugging=0
--download-f-blas-lapack=1 --download-parmetis=1 --download-superlu_dist=1
--download-superlu=1 --download-scalapack=1 --download-blacs=1
--download-mumps=1 --download-hypre=1
[1409]PETSC ERROR:
------------------------------------------------------------------------
[1409]PETSC ERROR: User provided function() line 0 in unknown directory
unknown file
***ASSERTION failed on line 169 of file ccgraph.c: cadjwgtsum[cnvtxs] ==
idxsum(nedges, cadjwgt)
0 91 89 91 0
[1233]PETSC ERROR:
------------------------------------------------------------------------
[1233]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,
probably memory access out of range
[1233]PETSC ERROR: Try option -start_in_debugger or
-on_error_attach_debugger
[1233]PETSC ERROR: or see
http://www.mcs.anl.gov/petsc/petsc-as/documentation/faq.html#valgrind[1233]PETSCERROR:
or try
http://valgrind.org on GNU/linux and Apple Mac OS X to find memory
corruption errors
[1233]PETSC ERROR: configure using --with-debugging=yes, recompile, link,
and run
[1233]PETSC ERROR: to get more information on the crash.
[1233]PETSC ERROR: --------------------- Error Message
------------------------------------
[1233]PETSC ERROR: Signal received!
[1233]PETSC ERROR:
------------------------------------------------------------------------
[1233]PETSC ERROR: Petsc Release Version 3.2.0, Patch 4, Sun Oct 23
12:23:18 CDT 2011
[1233]PETSC ERROR: See docs/changes/index.html for recent updates.
[1233]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[1233]PETSC ERROR: See docs/index.html for manual pages.
[1233]PETSC ERROR:
------------------------------------------------------------------------
[1233]PETSC ERROR: ./joab on a Janus-nod named node1304 by ronglian Sat Nov
26 21:44:16 2011
[1233]PETSC ERROR: Libraries linked from
/projects/ronglian/soft/petsc-3.2-p4/Janus-nodebug/lib
[1233]PETSC ERROR: Configure run at Tue Oct 25 19:27:52 2011
[1233]PETSC ERROR: Configure options --known-level1-dcache-size=32768
--known-level1-dcache-linesize=32 --known-level1-dcache-assoc=0
--known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8
--known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8
--known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8
--known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8
--known-sizeof-MPI_Fint=4 --known-mpi-long-double=1 --with-batch=1
--with-mpi-shared=1 --known-mpi-shared-libraries=0 --with-debugging=0
--download-f-blas-lapack=1 --download-parmetis=1 --download-superlu_dist=1
--download-superlu=1 --download-scalapack=1 --download-blacs=1
--download-mumps=1 --download-hypre=1
[1233]PETSC ERROR:
------------------------------------------------------------------------
[1233]PETSC ERROR: User provided function() line 0 in unknown directory
unknown file
***ASSERTION failed on line 169 of file ccgraph.c: cadjwgtsum[cnvtxs] ==
idxsum(nedges, cadjwgt)
0 91 89 91 0
[1026]PETSC ERROR:
------------------------------------------------------------------------
[1026]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,
probably memory access out of range
[1026]PETSC ERROR: Try option -start_in_debugger or
-on_error_attach_debugger
[1026]PETSC ERROR: or see
http://www.mcs.anl.gov/petsc/petsc-as/documentation/faq.html#valgrind[1026]PETSCERROR:
or try
http://valgrind.org on GNU/linux and Apple Mac OS X to find memory
corruption errors
[1026]PETSC ERROR: configure using --with-debugging=yes, recompile, link,
and run
[1026]PETSC ERROR: to get more information on the crash.
[1026]PETSC ERROR: --------------------- Error Message
------------------------------------
[1026]PETSC ERROR: Signal received!
[1026]PETSC ERROR:
------------------------------------------------------------------------
[1026]PETSC ERROR: Petsc Release Version 3.2.0, Patch 4, Sun Oct 23
12:23:18 CDT 2011
[1026]PETSC ERROR: See docs/changes/index.html for recent updates.
[1026]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[1026]PETSC ERROR: See docs/index.html for manual pages.
[1026]PETSC ERROR:
------------------------------------------------------------------------
[1026]PETSC ERROR: ./joab on a Janus-nod named node1323 by ronglian Sat Nov
26 21:44:16 2011
[1026]PETSC ERROR: Libraries linked from
/projects/ronglian/soft/petsc-3.2-p4/Janus-nodebug/lib
[1026]PETSC ERROR: Configure run at Tue Oct 25 19:27:52 2011
[1026]PETSC ERROR: Configure options --known-level1-dcache-size=32768
--known-level1-dcache-linesize=32 --known-level1-dcache-assoc=0
--known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8
--known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8
--known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8
--known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8
--known-sizeof-MPI_Fint=4 --known-mpi-long-double=1 --with-batch=1
--with-mpi-shared=1 --known-mpi-shared-libraries=0 --with-debugging=0
--download-f-blas-lapack=1 --download-parmetis=1 --download-superlu_dist=1
--download-superlu=1 --download-scalapack=1 --download-blacs=1
--download-mumps=1 --download-hypre=1
[1026]PETSC ERROR:
------------------------------------------------------------------------
[1026]PETSC ERROR: User provided function() line 0 in unknown directory
unknown file
***ASSERTION failed on line 169 of file ccgraph.c: cadjwgtsum[cnvtxs] ==
idxsum(nedges, cadjwgt)
0 91 89 91 0
[1326]PETSC ERROR:
------------------------------------------------------------------------
[1326]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,
probably memory access out of range
[1326]PETSC ERROR: Try option -start_in_debugger or
-on_error_attach_debugger
[1326]PETSC ERROR: or see
http://www.mcs.anl.gov/petsc/petsc-as/documentation/faq.html#valgrind[1326]PETSCERROR:
or try
http://valgrind.org on GNU/linux and Apple Mac OS X to find memory
corruption errors
[1326]PETSC ERROR: configure using --with-debugging=yes, recompile, link,
and run
[1326]PETSC ERROR: to get more information on the crash.
[1326]PETSC ERROR: --------------------- Error Message
------------------------------------
[1326]PETSC ERROR: Signal received!
[1326]PETSC ERROR:
------------------------------------------------------------------------
[1326]PETSC ERROR: Petsc Release Version 3.2.0, Patch 4, Sun Oct 23
12:23:18 CDT 2011
[1326]PETSC ERROR: See docs/changes/index.html for recent updates.
[1326]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[1326]PETSC ERROR: See docs/index.html for manual pages.
[1326]PETSC ERROR:
------------------------------------------------------------------------
[1326]PETSC ERROR: ./joab on a Janus-nod named node1276 by ronglian Sat Nov
26 21:44:16 2011
[1326]PETSC ERROR: Libraries linked from
/projects/ronglian/soft/petsc-3.2-p4/Janus-nodebug/lib
[1326]PETSC ERROR: Configure run at Tue Oct 25 19:27:52 2011
[1326]PETSC ERROR: Configure options --known-level1-dcache-size=32768
--known-level1-dcache-linesize=32 --known-level1-dcache-assoc=0
--known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8
--known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8
--known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8
--known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8
--known-sizeof-MPI_Fint=4 --known-mpi-long-double=1 --with-batch=1
--with-mpi-shared=1 --known-mpi-shared-libraries=0 --with-debugging=0
--download-f-blas-lapack=1 --download-parmetis=1 --download-superlu_dist=1
--download-superlu=1 --download-scalapack=1 --download-blacs=1
--download-mumps=1 --download-hypre=1
[1326]PETSC ERROR:
------------------------------------------------------------------------
[1326]PETSC ERROR: User provided function() line 0 in unknown directory
unknown file
***ASSERTION failed on line 169 of file ccgraph.c: cadjwgtsum[cnvtxs] ==
idxsum(nedges, cadjwgt)
0 91 89 91 0
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.mcs.anl.gov/pipermail/petsc-users/attachments/20111127/7e2a8736/attachment.htm>