[petsc-users] petsc-users Digest, Vol 35, Issue 52
Matthew Knepley
knepley at gmail.com
Wed Nov 16 13:36:52 CST 2011
On Wed, Nov 16, 2011 at 1:31 PM, Yixun Liu <yxliuwm at gmail.com> wrote:
> Hi,
> Please see the attachment.
>
Your compiler does not work (it returns error code from the compile).
Perhaps you have not
correctly set environment variables?
Matt
>
> Yixun
>
> On Wed, Nov 16, 2011 at 1:00 PM, <petsc-users-request at mcs.anl.gov> wrote:
>
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>> Today's Topics:
>>
>> 1. Re: configuration error on Windows with VS2005 (Satish Balay)
>> 2. Re: ERROR Arguments are incompatible in MatSetValues()
>> (Matthew Knepley)
>>
>>
>> ----------------------------------------------------------------------
>>
>> Message: 1
>> Date: Wed, 16 Nov 2011 10:21:29 -0600 (CST)
>> From: Satish Balay <balay at mcs.anl.gov>
>> Subject: Re: [petsc-users] configuration error on Windows with VS2005
>> To: PETSc users list <petsc-users at mcs.anl.gov>
>> Message-ID: <alpine.LFD.2.02.1111161019310.2218 at asterix>
>> Content-Type: TEXT/PLAIN; charset=US-ASCII
>>
>> Please send the corresponding configure.log to petsc-maint at mcs.anl.gov
>>
>> Satish
>>
>> On Wed, 16 Nov 2011, Yixun Liu wrote:
>>
>> > Hi,
>> > I have a configuration error as I install PETSc.
>> >
>> > According to the installation instructions, I first *Setup cygwin bash
>> > shell with Working Compilers:*
>> >
>> > C:\Program Files (x86)\Microsoft Visual Studio
>> 8\VC>c:\cygwin\bin\bash.exe
>> > --login
>> >
>> > I got the following message:
>> >
>> > Your group is currently "mkpasswd". This indicates that your
>> > gid is not in /etc/group and your uid is not in /etc/passwd.
>> > The /etc/passwd (and possibly /etc/group) files should be rebuilt.
>> > See the man pages for mkpasswd and mkgroup then, for example, run
>> > mkpasswd -l [-d] > /etc/passwd
>> > mkgroup -l [-d] > /etc/group
>> > Note that the -d switch is necessary for domain users.
>> >
>> > Then I run the commands:
>> > mkpasswd -l > /etc/passwd and
>> > mkpasswd -l > /etc/group
>> >
>> > at last, as I run command cl, I got message:
>> >
>> > Microsoft (R) 32-bit C/C++ Optimizing Compiler Version 14.00.50727.762
>> for
>> > 80x86
>> > Copyright (C) Microsoft Corporation. All rights reserved.
>> > usage: cl [ option... ] filename... [ /link linkoption... ]
>> >
>> > So, I think it works now.
>> >
>> > Then I configure PETSc with the following command, but get the error "C
>> > compiler you provided with -with-cc=win32fe cl does not work".
>> >
>> >
>> > liuy14 at CC1DR1C515W05 /cygdrive/c/Yixun/VC/petsc-3.2-p5# ./configure
>> > --with-cc='win32fe cl' --with-fc='win32fe ifort' --with-cxx='win 32fe
>> cl'
>> > --download-f-blas-lapack=1
>> >
>> >
>> ===============================================================================
>> > Configuring PETSc to compile on your system
>> >
>> ===============================================================================
>> > TESTING: configureExternalPackagesDir from
>> > config.framework(config/BuildSystem/c
>> > TESTING: configureDebuggers from
>> > PETSc.utilities.debuggers(config/PETSc/utilitie
>> > TESTING: configureCMake from
>> > PETSc.utilities.CMake(config/PETSc/utilities/CMake.
>> > TESTING: configureCLanguage from
>> > PETSc.utilities.languages(config/PETSc/utilitie
>> > TESTING: configureLanguageSupport from
>> > PETSc.utilities.languages(config/PETSc/ut
>> > TESTING: configureExternC from
>> > PETSc.utilities.languages(config/PETSc/utilities/
>> > TESTING: configureFortranLanguage from
>> > PETSc.utilities.languages(config/PETSc/ut
>> > TESTING: configureMake from
>> > config.programs(config/BuildSystem/config/programs.p
>> > TESTING: configureMkdir from
>> > config.programs(config/BuildSystem/config/programs.
>> > TESTING: configurePrograms from
>> > config.programs(config/BuildSystem/config/progra
>> > TESTING: configureMercurial from
>> > config.sourceControl(config/BuildSystem/config/
>> > TESTING: configureCVS from
>> > config.sourceControl(config/BuildSystem/config/source
>> > TESTING: configureSubversion from
>> > config.sourceControl(config/BuildSystem/config
>> > TESTING: configureDirectories from
>> > PETSc.utilities.petscdir(config/PETSc/utiliti
>> > TESTING: configureExternalPackagesDir from
>> > PETSc.utilities.petscdir(config/PETSc
>> > TESTING: configureInstallationMethod from
>> > PETSc.utilities.petscdir(config/PETSc/
>> > TESTING: configureETags from
>> > PETSc.utilities.Etags(config/PETSc/utilities/Etags.
>> > TESTING: getDatafilespath from
>> > PETSc.utilities.dataFilesPath(config/PETSc/utilit
>> > TESTING: resetEnvCompilers from
>> > config.setCompilers(config/BuildSystem/config/se
>> > TESTING: checkMPICompilerOverride from
>> > config.setCompilers(config/BuildSystem/co
>> > TESTING: checkVendor from
>> > config.setCompilers(config/BuildSystem/config/setCompi
>> > TESTING: checkInitialFlags from
>> > config.setCompilers(config/BuildSystem/config/se
>> > TESTING: checkCCompiler from
>> > config.setCompilers(config/BuildSystem/config/setCo
>> > File
>> >
>> "/cygdrive/c/Yixun/VC/petsc-3.2-p5/config/BuildSystem/config/setCompilers
>> > .py", line 508, in checkCCompiler
>> > self.checkCompiler('C')
>> > File
>> >
>> "/cygdrive/c/Yixun/VC/petsc-3.2-p5/config/BuildSystem/config/setCompilers
>> > .py", line 410, in checkCompiler
>> > raise RuntimeError(msg)
>> >
>> *******************************************************************************
>> > UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log
>> for
>> > detail
>> > s):
>> >
>> -------------------------------------------------------------------------------
>> > C compiler you provided with -with-cc=win32fe cl does not work
>> >
>> *******************************************************************************
>> >
>> >
>> > Thank you for your help.
>> >
>> > Best,
>> >
>> > Yixun
>> >
>>
>>
>>
>> ------------------------------
>>
>> Message: 2
>> Date: Wed, 16 Nov 2011 11:33:13 -0600
>> From: Matthew Knepley <petsc-maint at mcs.anl.gov>
>> Subject: Re: [petsc-users] ERROR Arguments are incompatible in
>> MatSetValues()
>> To: PETSc users list <petsc-users at mcs.anl.gov>
>> Message-ID:
>> <CAMYG4GmyUeoi8DVnu-p3gWdQgyeqdB45juT7mNJs_==
>> Zk4Cf-Q at mail.gmail.com>
>> Content-Type: text/plain; charset="iso-8859-1"
>>
>> On Wed, Nov 16, 2011 at 10:09 AM, PEREZ CERQUERA MANUEL RICARDO <
>> manuel.perezcerquera at polito.it> wrote:
>>
>> > Hi all,
>> >
>> > I have a petsc code which works for a certain number of unknowns, I mean
>> > it works with a matrix of 12000X 12000 elements, then when I increase
>> the
>> > Number of unknowns to 25000 X 25000 I got this error at certain point in
>> > one of the MatSetValues() function, I don't know which are the possible
>> > causes, I have enough memory to handle it. Could you give me some ideas
>> of
>> > whats going on? . Thanks
>> >
>>
>> It appears that you are overflowing the integer offsets. I recommend
>> trying
>> this either:
>>
>> a) With a 64-bit OS
>>
>> or if you cannot upgrade the machine
>>
>> b) Configuring with --with-64-bit-indices
>>
>> Thanks,
>>
>> Matt
>>
>>
>> > [0]PETSC ERROR: Fortran Pause - Enter command<CR> or <CR> to continue.
>> > --------------------- Error Message
>> ------------------------------**------
>> > [0]PETSC ERROR: Arguments are incompatible!
>> > [0]PETSC ERROR: Memory regions overlap: either use PetscMemmov()
>> > or make sure your copy regions and lengths are correct.
>> > Length (bytes) 1217067760 first address -844745856 second
>> > address
>> > -1712377200!
>> > [0]PETSC ERROR: ------------------------------**
>> > ------------------------------**----
>> > --------
>> > [0]PETSC ERROR: Petsc Release Version 3.2.0, Patch 5, Sat Oct 29
>> 13:45:54
>> > CDT 20
>> > 11
>> > [0]PETSC ERROR: See docs/changes/index.html for recent updates.
>> > [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
>> > [0]PETSC ERROR: See docs/index.html for manual pages.
>> > [0]PETSC ERROR: ------------------------------**
>> > ------------------------------**----
>> > --------
>> > [0]PETSC ERROR: C:\Documents and Settings\d022117\Desktop\**
>> > MPIRunsPatrju\patreju1
>> > .1.exe on a arch-mswi named GVSRV by d022117 Tue Nov 15 19:00:13 2011
>> > [0]PETSC ERROR: Libraries linked from /home/d022117/petsc-3.2-p5/**
>> > arch-mswin-cxx-
>> > debug/lib
>> > [0]PETSC ERROR: Configure run at Mon Nov 7 13:06:56 2011
>> > [0]PETSC ERROR: Configure options --with-cc="win32fe cl"
>> > --with-fc="win32fe ifor
>> > t" --with-cxx="win32fe cl" --download-f-blas-lapack=1
>> > --with-scalar-type=complex
>> > --with-clanguage=cxx --useThreads=0
>> > [0]PETSC ERROR: ------------------------------**
>> > ------------------------------**----
>> > --------
>> > [0]PETSC ERROR: PetscMemcpy() line 1779 in src/mat/impls/aij/seq/e:\**
>> > users\manuel
>> > \phd\cygwin\home\d022117\**petsc-3.2-p5\include\petscsys.**h
>> > [0]PETSC ERROR: MatSetValues_SeqAIJ() line 331 in
>> > src/mat/impls/aij/seq/E:\Users
>> > \Manuel\Phd\Cygwin\home\**d022117\PETSC-~2.2-P\src\mat\**
>> > impls\aij\seq\aij.c
>> > [0]PETSC ERROR: MatSetValues() line 1115 in
>> src/mat/interface/E:\Users\**
>> > Manuel\Ph
>> > d\Cygwin\home\d022117\PETSC-~**2.2-P\src\mat\INTERF~1\matrix.**c
>> >
>> > job aborted:
>> > rank: node: exit code[: error message]
>> > 0: gvsrv.delen.polito.it: 1: process 0 exited without calling finalize
>> >
>> > Eng. Manuel Ricardo Perez Cerquera. MSc. Ph.D student
>> > Antenna and EMC Lab (LACE)
>> > Istituto Superiore Mario Boella (ISMB)
>> > Politecnico di Torino
>> > Via Pier Carlo Boggio 61, Torino 10138, Italy
>> > Email: manuel.perezcerquera at polito.it
>> > Phone: +39 0112276704
>> > Fax: +39 011 2276 299
>> >
>>
>>
>>
>> --
>> What most experimenters take for granted before they begin their
>> experiments is infinitely more interesting than any results to which their
>> experiments lead.
>> -- Norbert Wiener
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>> End of petsc-users Digest, Vol 35, Issue 52
>> *******************************************
>>
>
>
--
What most experimenters take for granted before they begin their
experiments is infinitely more interesting than any results to which their
experiments lead.
-- Norbert Wiener
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