[petsc-users] make test error after petsc installation

[Matthew Knepley]

On Sat, Jun 25, 2011 at 9:07 AM, Yi Mei <njumeiyi at gmail.com> wroteHi,
>
>
> I am new to petsc.
>
> I downloaded the latest version of petsc, and followed the installation
> guide, did the following:
>

You can ignore these warnings. The Fortran example ran correctly. These will
be fixed in the next release.

  Thanks,

     Matt


> cd petsc-3.1-p8/
> PETSC_DIR=$PWD; export PETSC_DIR
> ./config/configure.py --with-cc=gcc --with-fc=gfortran
> --download-f-blas-lapack=1 --download-mpich=1
> make all
> make test
>
> Then I got the following error and warning message:
>
> --------------Error detected during compile or link!-----------------------
> See
> http://www.mcs.anl.gov/petsc/petsc-2/documentation/troubleshooting.html
> /home/yimei/Linuxsoft/petsc/petsc-3.1-p8/linux-gnu-c-debug/bin/mpif90 -c
>  -Wall -Wno-unused-variable -g
>  -I/home/yimei/Linuxsoft/petsc/petsc-3.1-p8/linux-gnu-c-debug/include
> -I/home/yimei/Linuxsoft/petsc/petsc-3.1-p8/include
> -I/home/yimei/Linuxsoft/petsc/petsc-3.1-p8/linux-gnu-c-debug/include
> -I/home/yimei/Linuxsoft/petsc/petsc-3.1-p8/linux-gnu-c-debug/include
> -I/home/yimei/Linuxsoft/petsc/petsc-3.1-p8/linux-gnu-c-debug/include    -o
> ex5f.o ex5f.F
> ex5f.F:92.72:
>
>       call PetscOptionsGetReal(PETSC_NULL_CHARACTER,'-par',lambda,
>                                                                         1
> Warning: Line truncated at (1)
> ex5f.F:113.72:
>
>       call DACreate2d(PETSC_COMM_WORLD,DA_NONPERIODIC,DA_STENCIL_STAR,
>                                                                         1
> Warning: Line truncated at (1)
> ex5f.F:114.72:
>
>      &     i4,i4,PETSC_DECIDE,PETSC_DECIDE,i1,i1,PETSC_NULL_INTEGER,
>                                                                         1
> Warning: Line truncated at (1)
> ex5f.F:125.72:
>
>       call DAGetInfo(da,PETSC_NULL_INTEGER,mx,my,PETSC_NULL_INTEGER,
>                                                                         1
> Warning: Line truncated at (1)
> ex5f.F:126.72:
>
>      &               PETSC_NULL_INTEGER,PETSC_NULL_INTEGER,
>                                                                         1
> Warning: Line truncated at (1)
> ex5f.F:127.72:
>
>      &               PETSC_NULL_INTEGER,PETSC_NULL_INTEGER,
>                                                                         1
> Warning: Line truncated at (1)
> ex5f.F:128.72:
>
>      &               PETSC_NULL_INTEGER,PETSC_NULL_INTEGER,
>                                                                         1
> Warning: Line truncated at (1)
> ex5f.F:130.72:
>
>       call DAGetCorners(da,xs,ys,PETSC_NULL_INTEGER,xm,ym,
>                                                                         1
> Warning: Line truncated at (1)
> ex5f.F:132.72:
>
>       call DAGetGhostCorners(da,gxs,gys,PETSC_NULL_INTEGER,gxm,gym,
>                                                                         1
> Warning: Line truncated at (1)
> ex5f.F:188.72:
>
>       call SNESSetJacobian(snes,A,J,SNESDAComputeJacobian,
>                                                                         1
> Warning: Line truncated at (1)
> ex5f.F:344.72:
>
>             if (i .eq. 1 .or. j .eq. 1
>                                                                         1
> Warning: Line truncated at (1)
> ex5f.F:348.72:
>
>               x(i,j) = temp1 *
>                                                                         1
> Warning: Line truncated at (1)
> ex5f.F:412.72:
>
>             if (i .eq. 1 .or. j .eq. 1
>                                                                         1
> Warning: Line truncated at (1)
> ex5f.F:417.72:
>
>                uxx = hydhx * (two*u
>                                                                         1
> Warning: Line truncated at (1)
> ex5f.F:517.72:
>
>             if (i .eq. 1 .or. j .eq. 1
>                                                                         1
> Warning: Line truncated at (1)
> ex5f.F:522.72:
>
>                call MatSetValuesLocal(jac,i1,row,i1,col,v,
>                                                                         1
> Warning: Line truncated at (1)
> ex5f.F:528.72:
>
>                v(3) = two*(hydhx + hxdhy)
>                                                                         1
> Warning: Line truncated at (1)
> ex5f.F:537.72:
>
>                call MatSetValuesLocal(jac,i1,row,i5,col,v,
>                                                                         1
> Warning: Line truncated at (1)
> /home/yimei/Linuxsoft/petsc/petsc-3.1-p8/linux-gnu-c-debug/bin/mpif90 -Wall
> -Wno-unused-variable -g  -o ex5f ex5f.o
> -Wl,-rpath,/home/yimei/Linuxsoft/petsc/petsc-3.1-p8/linux-gnu-c-debug/lib
> -L/home/yimei/Linuxsoft/petsc/petsc-3.1-p8/linux-gnu-c-debug/lib -lpetsc
>  -lX11
> -Wl,-rpath,/home/yimei/Linuxsoft/petsc/petsc-3.1-p8/linux-gnu-c-debug/lib
> -L/home/yimei/Linuxsoft/petsc/petsc-3.1-p8/linux-gnu-c-debug/lib -lflapack
> -lfblas -lnsl -lrt -lm
> -L/home/yimei/Linuxsoft/petsc/petsc-3.1-p8/linux-gnu-c-debug/lib
> -L/usr/lib/i386-linux-gnu/gcc/i686-linux-gnu/4.5.2 -L/usr/lib/i386-linux-gnu
> -ldl -lmpich -lpthread -lrt -lgcc_s -lmpichf90 -lgfortran -lm -lm -ldl
> -lmpich -lpthread -lrt -lgcc_s -ldl
> /bin/rm -f ex5f.o
> Fortran example src/snes/examples/tutorials/ex5f run successfully with 1
> MPI process
>
>
> Could you please help me figure out what I did wrong during the
> installation of this package?
>
> Thank you so much!
>
> Best
> Yi
>
>
>
>


-- 
What most experimenters take for granted before they begin their experiments
is infinitely more interesting than any results to which their experiments
lead.
-- Norbert Wiener
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