[petsc-users] several messages
Satish Balay
balay at mcs.anl.gov
Wed Dec 7 12:57:36 CST 2011
>>>
/opt/petsc/petsc-3.2-p5/mpi_cScalar/include/petscconfiginfo.h(3): error: missing closing quote
";
^
<<<
Can you send in this file as attachment?
>>>>>>>>>
Configure Options: --configModules=PETSc.Configure --optionsModule=PETSc.compilerOptions --with-petsc-arch=mpi_cScalar --with-mpi-dir=/opt/mpich2-current --with-scalar-type=complex --with-blas-lapack-dir=/opt/intel/lib/intel64 --download-umfpack=1 --with-exodusii-dir=/opt/exodusii-4.98 --with-netcdf-dir=/opt/netcdf_v4.1.1 --download-superlu_dist=1 --download-parmetis=1 --download-mumps=1 --download-scalapack=1 --download-blacs=1^M
<<<<<<<<
Not sure how the ^M char crept into the configure run - but perhaps
its causing the petscconfiginfo.h file to be not created correctly.
Satish
On Wed, 7 Dec 2011, Dharmendar Reddy wrote:
> Hello,
> Can you tell me what should be the config options to use the
> scalapack and blacs provided in intel mkl with petsc ?
>
> thanks
> Reddy
>
>
On Wed, 7 Dec 2011, Alexander Grayver wrote:
> Hi Reddy,
>
> You should use --with-scalapack-lib/include and --with-blacs-lib/include
>
> For instance:
> --with-scalapack-lib=/opt/intel/Compiler/11.1/072/mkl/lib/em64t/libmkl_scalapack_lp64.a
> --with-scalapack-include=/opt/intel/Compiler/11.1/072/mkl/include
> --with-blacs-lib=/opt/intel/Compiler/11.1/072/mkl/lib/em64t/libmkl_blacs_openmpi_lp64.a
> --with-blacs-include=/opt/intel/Compiler/11.1/072/mkl/include
>
> Regards,
> Alexander
>
> On 07.12.2011 13:26, Dharmendar Reddy wrote:
> > Hello,
> > Can you tell me what should be the config options to use the
> > scalapack and blacs provided in intel mkl with petsc ?
> >
> > thanks
> > Reddy
> >
> > --
> > -----------------------------------------------------
> > Dharmendar Reddy Palle
> > Graduate Student
> > Microelectronics Research center,
> > University of Texas at Austin,
> > 10100 Burnet Road, Bldg. 160
> > MER 2.608F, TX 78758-4445
> > e-mail: dharmareddy84 at gmail.com <mailto:dharmareddy84 at gmail.com>
> > Phone: +1-512-350-9082
> > United States of America.
> >
>
>
On Wed, 7 Dec 2011, Dharmendar Reddy wrote:
> I sent this email to petsc-users, it bounced back. Can someone please
> clarify the following query..
>
> ---------- Forwarded message ----------
> From: Dharmendar Reddy <dharmareddy84 at gmail.com>
> Date: Wed, Dec 7, 2011 at 7:42 AM
> Subject: Re: [petsc-users] petsc with scalapack and blacs from intel ?
> To: PETSc users list <petsc-users at mcs.anl.gov>
>
>
> I tried --with-scalapack-dir=/opt/inte/mkl/ --with-blacs-dir=/opt/intel/mkl
> and now with the method suggested by you
> I am getting an error. I have attached the configure.log
>
> *******************************************************************************
> UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for
> details):
> -------------------------------------------------------------------------------
> --with-blacs-lib=['/opt/intel/mkl/lib/intel64/libmkl_blacs_openmpi_lp64.a']
> and
> --with-blacs-include=['/opt/intel/mkl/include'] did not work
> *******************************************************************************
>
>
> On Wed, Dec 7, 2011 at 6:42 AM, Alexander Grayver
> <agrayver at gfz-potsdam.de>wrote:
>
> > **
> > Hi Reddy,
> >
> > You should use --with-scalapack-lib/include and --with-blacs-lib/include
> >
> > For instance:
> > --with-scalapack-lib=/opt/intel/Compiler/11.1/072/mkl/lib/em64t/libmkl_scalapack_lp64.a
> > --with-scalapack-include=/opt/intel/Compiler/11.1/072/mkl/include
> > --with-blacs-lib=/opt/intel/Compiler/11.1/072/mkl/lib/em64t/libmkl_blacs_openmpi_lp64.a
> > --with-blacs-include=/opt/intel/Compiler/11.1/072/mkl/include
> >
> > Regards,
> > Alexander
> >
> >
> > On 07.12.2011 13:26, Dharmendar Reddy wrote:
> >
> > Hello,
> > Can you tell me what should be the config options to use the
> > scalapack and blacs provided in intel mkl with petsc ?
> >
> > thanks
> > Reddy
> >
> > --
> > -----------------------------------------------------
> > Dharmendar Reddy Palle
> > Graduate Student
> > Microelectronics Research center,
> > University of Texas at Austin,
> > 10100 Burnet Road, Bldg. 160
> > MER 2.608F, TX 78758-4445
> > e-mail: dharmareddy84 at gmail.com
> > Phone: +1-512-350-9082
> > United States of America.
> >
> >
> >
>
>
>
On Wed, 7 Dec 2011, Satish Balay wrote:
> > --with-mpi-dir=/opt/mpich2-current
>
> I guess thats incompatible with /opt/intel/mkl/lib/intel64/libmkl_blacs_openmpi_lp64.a
>
>
> its easier just to use --download-blacs --download-scalapack.
>
> Satish
>
>
> On Wed, 7 Dec 2011, Dharmendar Reddy wrote:
>
> > I sent this email to petsc-users, it bounced back. Can someone please
> > clarify the following query..
> >
> > ---------- Forwarded message ----------
> > From: Dharmendar Reddy <dharmareddy84 at gmail.com>
> > Date: Wed, Dec 7, 2011 at 7:42 AM
> > Subject: Re: [petsc-users] petsc with scalapack and blacs from intel ?
> > To: PETSc users list <petsc-users at mcs.anl.gov>
> >
> >
> > I tried --with-scalapack-dir=/opt/inte/mkl/ --with-blacs-dir=/opt/intel/mkl
> > and now with the method suggested by you
> > I am getting an error. I have attached the configure.log
> >
> > *******************************************************************************
> > UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for
> > details):
> > -------------------------------------------------------------------------------
> > --with-blacs-lib=['/opt/intel/mkl/lib/intel64/libmkl_blacs_openmpi_lp64.a']
> > and
> > --with-blacs-include=['/opt/intel/mkl/include'] did not work
> > *******************************************************************************
> >
> >
> > On Wed, Dec 7, 2011 at 6:42 AM, Alexander Grayver
> > <agrayver at gfz-potsdam.de>wrote:
> >
> > > **
> > > Hi Reddy,
> > >
> > > You should use --with-scalapack-lib/include and --with-blacs-lib/include
> > >
> > > For instance:
> > > --with-scalapack-lib=/opt/intel/Compiler/11.1/072/mkl/lib/em64t/libmkl_scalapack_lp64.a
> > > --with-scalapack-include=/opt/intel/Compiler/11.1/072/mkl/include
> > > --with-blacs-lib=/opt/intel/Compiler/11.1/072/mkl/lib/em64t/libmkl_blacs_openmpi_lp64.a
> > > --with-blacs-include=/opt/intel/Compiler/11.1/072/mkl/include
> > >
> > > Regards,
> > > Alexander
> > >
> > >
> > > On 07.12.2011 13:26, Dharmendar Reddy wrote:
> > >
> > > Hello,
> > > Can you tell me what should be the config options to use the
> > > scalapack and blacs provided in intel mkl with petsc ?
> > >
> > > thanks
> > > Reddy
> > >
> > > --
> > > -----------------------------------------------------
> > > Dharmendar Reddy Palle
> > > Graduate Student
> > > Microelectronics Research center,
> > > University of Texas at Austin,
> > > 10100 Burnet Road, Bldg. 160
> > > MER 2.608F, TX 78758-4445
> > > e-mail: dharmareddy84 at gmail.com
> > > Phone: +1-512-350-9082
> > > United States of America.
> > >
> > >
> > >
> >
> >
> >
>
>
>
On Wed, 7 Dec 2011, Dharmendar Reddy wrote:
> I was trying to install mumps and then i got messages that i need to
> install scalapack and blacs. I will try the --download options..
>
> On Wed, Dec 7, 2011 at 10:57 AM, Satish Balay <petsc-maint at mcs.anl.gov>wrote:
>
> > > --with-mpi-dir=/opt/mpich2-current
> >
> > I guess thats incompatible with
> > /opt/intel/mkl/lib/intel64/libmkl_blacs_openmpi_lp64.a
> >
> >
> > its easier just to use --download-blacs --download-scalapack.
> >
> > Satish
> >
> >
> > On Wed, 7 Dec 2011, Dharmendar Reddy wrote:
> >
> > > I sent this email to petsc-users, it bounced back. Can someone please
> > > clarify the following query..
> > >
> > > ---------- Forwarded message ----------
> > > From: Dharmendar Reddy <dharmareddy84 at gmail.com>
> > > Date: Wed, Dec 7, 2011 at 7:42 AM
> > > Subject: Re: [petsc-users] petsc with scalapack and blacs from intel ?
> > > To: PETSc users list <petsc-users at mcs.anl.gov>
> > >
> > >
> > > I tried --with-scalapack-dir=/opt/inte/mkl/
> > --with-blacs-dir=/opt/intel/mkl
> > > and now with the method suggested by you
> > > I am getting an error. I have attached the configure.log
> > >
> > >
> > *******************************************************************************
> > > UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for
> > > details):
> > >
> > -------------------------------------------------------------------------------
> > >
> > --with-blacs-lib=['/opt/intel/mkl/lib/intel64/libmkl_blacs_openmpi_lp64.a']
> > > and
> > > --with-blacs-include=['/opt/intel/mkl/include'] did not work
> > >
> > *******************************************************************************
> > >
> > >
> > > On Wed, Dec 7, 2011 at 6:42 AM, Alexander Grayver
> > > <agrayver at gfz-potsdam.de>wrote:
> > >
> > > > **
> > > > Hi Reddy,
> > > >
> > > > You should use --with-scalapack-lib/include and
> > --with-blacs-lib/include
> > > >
> > > > For instance:
> > > >
> > --with-scalapack-lib=/opt/intel/Compiler/11.1/072/mkl/lib/em64t/libmkl_scalapack_lp64.a
> > > > --with-scalapack-include=/opt/intel/Compiler/11.1/072/mkl/include
> > > >
> > --with-blacs-lib=/opt/intel/Compiler/11.1/072/mkl/lib/em64t/libmkl_blacs_openmpi_lp64.a
> > > > --with-blacs-include=/opt/intel/Compiler/11.1/072/mkl/include
> > > >
> > > > Regards,
> > > > Alexander
> > > >
> > > >
> > > > On 07.12.2011 13:26, Dharmendar Reddy wrote:
> > > >
> > > > Hello,
> > > > Can you tell me what should be the config options to use the
> > > > scalapack and blacs provided in intel mkl with petsc ?
> > > >
> > > > thanks
> > > > Reddy
> > > >
> > > > --
> > > > -----------------------------------------------------
> > > > Dharmendar Reddy Palle
> > > > Graduate Student
> > > > Microelectronics Research center,
> > > > University of Texas at Austin,
> > > > 10100 Burnet Road, Bldg. 160
> > > > MER 2.608F, TX 78758-4445
> > > > e-mail: dharmareddy84 at gmail.com
> > > > Phone: +1-512-350-9082
> > > > United States of America.
> > > >
> > > >
> > > >
> > >
> > >
> > >
> >
> >
>
>
>
On Wed, 7 Dec 2011, Satish Balay wrote:
> blacs is dependent on mpi - so if using libmkl_blacs_openmpi_lp64.a -
> make sure you use the right version of openmpi - thats compatible with
> it. [if not - choose the appropriate variant of blacs for your mpi]
>
> BTW: PETSc does not use blas/scalapack - its primarily needed by mumps.
>
> Satish
>
> On Wed, 7 Dec 2011, Alexander Grayver wrote:
>
> > Hi Reddy,
> >
> > You should use --with-scalapack-lib/include and --with-blacs-lib/include
> >
> > For instance:
> > --with-scalapack-lib=/opt/intel/Compiler/11.1/072/mkl/lib/em64t/libmkl_scalapack_lp64.a
> > --with-scalapack-include=/opt/intel/Compiler/11.1/072/mkl/include
> > --with-blacs-lib=/opt/intel/Compiler/11.1/072/mkl/lib/em64t/libmkl_blacs_openmpi_lp64.a
> > --with-blacs-include=/opt/intel/Compiler/11.1/072/mkl/include
> >
> > Regards,
> > Alexander
> >
> > On 07.12.2011 13:26, Dharmendar Reddy wrote:
> > > Hello,
> > > Can you tell me what should be the config options to use the
> > > scalapack and blacs provided in intel mkl with petsc ?
> > >
> > > thanks
> > > Reddy
> > >
> > > --
> > > -----------------------------------------------------
> > > Dharmendar Reddy Palle
> > > Graduate Student
> > > Microelectronics Research center,
> > > University of Texas at Austin,
> > > 10100 Burnet Road, Bldg. 160
> > > MER 2.608F, TX 78758-4445
> > > e-mail: dharmareddy84 at gmail.com <mailto:dharmareddy84 at gmail.com>
> > > Phone: +1-512-350-9082
> > > United States of America.
> > >
> >
> >
>
>
On Wed, 7 Dec 2011, Dharmendar Reddy wrote:
> I could configure with download options but now i get make error. Can you
> help me with this..
>
>
> On Wed, Dec 7, 2011 at 11:06 AM, Dharmendar Reddy
> <dharmareddy84 at gmail.com>wrote:
>
> > I was trying to install mumps and then i got messages that i need to
> > install scalapack and blacs. I will try the --download options..
> >
> >
> > On Wed, Dec 7, 2011 at 10:57 AM, Satish Balay <petsc-maint at mcs.anl.gov>wrote:
> >
> >> > --with-mpi-dir=/opt/mpich2-current
> >>
> >> I guess thats incompatible with
> >> /opt/intel/mkl/lib/intel64/libmkl_blacs_openmpi_lp64.a
> >>
> >>
> >> its easier just to use --download-blacs --download-scalapack.
> >>
> >> Satish
> >>
> >>
> >> On Wed, 7 Dec 2011, Dharmendar Reddy wrote:
> >>
> >> > I sent this email to petsc-users, it bounced back. Can someone please
> >> > clarify the following query..
> >> >
> >> > ---------- Forwarded message ----------
> >> > From: Dharmendar Reddy <dharmareddy84 at gmail.com>
> >> > Date: Wed, Dec 7, 2011 at 7:42 AM
> >> > Subject: Re: [petsc-users] petsc with scalapack and blacs from intel ?
> >> > To: PETSc users list <petsc-users at mcs.anl.gov>
> >> >
> >> >
> >> > I tried --with-scalapack-dir=/opt/inte/mkl/
> >> --with-blacs-dir=/opt/intel/mkl
> >> > and now with the method suggested by you
> >> > I am getting an error. I have attached the configure.log
> >> >
> >> >
> >> *******************************************************************************
> >> > UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log
> >> for
> >> > details):
> >> >
> >> -------------------------------------------------------------------------------
> >> >
> >> --with-blacs-lib=['/opt/intel/mkl/lib/intel64/libmkl_blacs_openmpi_lp64.a']
> >> > and
> >> > --with-blacs-include=['/opt/intel/mkl/include'] did not work
> >> >
> >> *******************************************************************************
> >> >
> >> >
> >> > On Wed, Dec 7, 2011 at 6:42 AM, Alexander Grayver
> >> > <agrayver at gfz-potsdam.de>wrote:
> >> >
> >> > > **
> >> > > Hi Reddy,
> >> > >
> >> > > You should use --with-scalapack-lib/include and
> >> --with-blacs-lib/include
> >> > >
> >> > > For instance:
> >> > >
> >> --with-scalapack-lib=/opt/intel/Compiler/11.1/072/mkl/lib/em64t/libmkl_scalapack_lp64.a
> >> > > --with-scalapack-include=/opt/intel/Compiler/11.1/072/mkl/include
> >> > >
> >> --with-blacs-lib=/opt/intel/Compiler/11.1/072/mkl/lib/em64t/libmkl_blacs_openmpi_lp64.a
> >> > > --with-blacs-include=/opt/intel/Compiler/11.1/072/mkl/include
> >> > >
> >> > > Regards,
> >> > > Alexander
> >> > >
> >> > >
> >> > > On 07.12.2011 13:26, Dharmendar Reddy wrote:
> >> > >
> >> > > Hello,
> >> > > Can you tell me what should be the config options to use the
> >> > > scalapack and blacs provided in intel mkl with petsc ?
> >> > >
> >> > > thanks
> >> > > Reddy
> >> > >
> >> > > --
> >> > > -----------------------------------------------------
> >> > > Dharmendar Reddy Palle
> >> > > Graduate Student
> >> > > Microelectronics Research center,
> >> > > University of Texas at Austin,
> >> > > 10100 Burnet Road, Bldg. 160
> >> > > MER 2.608F, TX 78758-4445
> >> > > e-mail: dharmareddy84 at gmail.com
> >> > > Phone: +1-512-350-9082
> >> > > United States of America.
> >> > >
> >> > >
> >> > >
> >> >
> >> >
> >> >
> >>
> >>
> >
> >
> > --
> > -----------------------------------------------------
> > Dharmendar Reddy Palle
> > Graduate Student
> > Microelectronics Research center,
> > University of Texas at Austin,
> > 10100 Burnet Road, Bldg. 160
> > MER 2.608F, TX 78758-4445
> > e-mail: dharmareddy84 at gmail.com
> > Phone: +1-512-350-9082
> > United States of America.
> >
> >
>
>
>
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