[petsc-users] Compile Errors with ifort 11.1

Fri Nov 12 11:51:09 CST 2010

Thank you very much for your efficient help.

Tahar
Le 12 nov. 2010 à 18:44, Satish Balay a écrit :

> Attaching a minimal sample makefile. The additional info it would
> need is PETSC_DIR, PETSC_ARCH values for your install of PETSc.
> 
> All example/tests,tutorial dirs have makefiles in petsc format..
> 
> Satish
> 
> On Fri, 12 Nov 2010, Tahar Amari wrote:
> 
>> Great thanks, it seems that -lpetsc alone works .
>> 
>> I will follow this advice regarding the makefile, for the reason you gave.
>> Where should I get a typical makefile to modify please ?
>> 
>> Tahar
>> 
>> 
>> Le 12 nov. 2010 à 18:34, Satish Balay a écrit :
>> 
>>> Make sure your compiles have all the flags listed here..
>>> 
>>> Its best to use petsc makefile formats so that this info is
>>> automatically picked up from the petsc config files. [and not tweak
>>> user makefiles for every install of petsc..]
>>> 
>>> Satish
>>> 
>>> On Fri, 12 Nov 2010, Tahar Amari wrote:
>>> 
>>>> You are right.
>>>> 
>>>> Here is what I got
>>>> 
>>>> 
>>>> timac> make getincludedirs getlinklibs
>>>> -I/Data/Poub1/petsc-3.1-p5/macx/include -I/Data/Poub1/petsc-3.1-p5/include -I/Data/Poub1/petsc-3.1-p5/macx/include
>>>> -L/Data/Poub1/petsc-3.1-p5/macx/lib -L/Data/Poub1/petsc-3.1-p5/macx/lib -L/Data/Poub1/petsc-3.1-p5/macx/lib -lpetsc -L/usr/X11R6/lib -lX11 -L/Data/Poub1/petsc-3.1-p5/macx/lib -lparmetis -lmetis -lflapack -lfblas -L/Data/Poub1/petsc-3.1-p5/macx/lib -L/usr/lib/gcc/i686-apple-darwin10/4.2.1/x86_64 -L/usr/lib/i686-apple-darwin10/4.2.1 -L/opt/intel/Compiler/11.1/088/lib -L/opt/intel/Compiler/11.1/088/Frameworks/mkl/lib/em64t -L/usr/lib/gcc/i686-apple-darwin10/4.2.1 -ldl -lpmpich -lmpich -lSystem -lmpichf90 -lifport -lifcore -limf -lsvml -lipgo -lgcc_s.10.5 -lSystemStubs -lmx -lirc -lpthread -ldl -lpmpich -lmpich -lSystem -ldl
>>>> 
>>>> 
>>>> What does it mean please for me to change in my makefiles ?
>>>> 
>>>> Do you mean that I should remove any link other than -lpetsc ?
>>>> 
>>>> Great thanks
>>>> 
>>>> Tahar
>>>> 
>>>> 
>>>> 
>>>> 
>>>> 
>>>> 
>>>> 
>>>> 
>>>> Le 12 nov. 2010 à 18:26, Satish Balay a écrit :
>>>> 
>>>>> Looks like you are not using PETSc makefiles - and upgrading from
>>>>> older release to petsc-3.1
>>>>> 
>>>>> Currently there is only one library for petsc [-lpetsc]
>>>>> 
>>>>> Check:
>>>>> cd $PETSC_DIR
>>>>> make getincludedirs getlinklibs
>>>>> 
>>>>> Satish
>>>>> 
>>>>> On Fri, 12 Nov 2010, Tahar Amari wrote:
>>>>> 
>>>>>> Many thanks. This is solved.
>>>>>> 
>>>>>> Now at link I have the library not found. Any idea ?
>>>>>> 
>>>>>> 
>>>>>> -L/usr/local/petsc/macx/lib -lpetscsnes -lpetscvec -lpetscmat -lpetsccontrib -lpetscts -lpetscdm -lpetscksp -lpetsc -lmpich -lpmpich -lfmpich -lmpichf90 -lparmetis -lmetis -lfblas -lflapack
>>>>>> ld: library not found for -lpetscsnes
>>>>>> 
>>>>>> 
>>>>>> Tahar
>>>>>> 
>>>>>> 
>>>>>> Le 12 nov. 2010 à 18:17, Satish Balay a écrit :
>>>>>> 
>>>>>>> Looks like this is related to the following:
>>>>>>> http://www.mcs.anl.gov/petsc/petsc-as/documentation/changes/31.html
>>>>>>> # petsc.h and petscdef.h are replaced with petscsys.h and petscsysdef.h; while petsc.h now includes ALL PETSc include files.
>>>>>>> 
>>>>>>> Try removing all includes other than 'petsc.h' from your code.
>>>>>>> 
>>>>>>> Satish
>>>>>>> 
>>>>>>> On Fri, 12 Nov 2010, Tahar Amari wrote:
>>>>>>> 
>>>>>>>> Hello,
>>>>>>>> 
>>>>>>>> While compiling one of my code with ifort , I have the following error pointing 
>>>>>>>> towards petscvec.h .
>>>>>>>> 
>>>>>>>> Any idea about this posssible kind of error please ? Any option of ifort to use ?
>>>>>>>> 
>>>>>>>> Many thanks
>>>>>>>> 
>>>>>>>> Tahar
>>>>>>>> 
>>>>>>>> 
>>>>>>>> ifort -assume byterecl  -I/usr/local/petsc/ -I/usr/local/petsc//include -I/usr/local/petsc//include/finclude -I/usr/local/petsc//macx/include -I/usr/X11R6/include/X11 -DPETSC_HAVE_PARMETIS -DPETSC_USE_DEBUG -DPETSC_USE_LOG -DPETSC_USE_BOPT_g -DPETSC_USE_STACK -DPETSC_AVOID_MPIF_H -c petsc.fpp
>>>>>>>> /usr/local/petsc//include/finclude/petscvec.h(10): error #6418: This name has already been assigned a data type.   [NORM_1]
>>>>>>>>   integer(kind=selected_int_kind(5)) NORM_1
>>>>>>>> 
>>>>>>>> 
>>>>>>>> 
>>>>>>>> --------------------------------------------
>>>>>>>> T. Amari
>>>>>>>> Centre de Physique Theorique
>>>>>>>> Ecole Polytechnique
>>>>>>>> 91128 Palaiseau Cedex France
>>>>>>>> tel : 33 1 69 33 42 52
>>>>>>>> fax: 33 1 69 33 49 49
>>>>>>>> email: <mailto:amari at cpht.polytechnique.fr>
>>>>>>>> URL : http://www.cpht.polytechnique.fr/cpht/amari
>>>>>>>> 
>>>>>>>> 
>>>>>>>> 
>>>>>>>> 
>>>>>>>> 
>>>>>>> 
>>>>>> 
>>>>>> --------------------------------------------
>>>>>> T. Amari
>>>>>> Centre de Physique Theorique
>>>>>> Ecole Polytechnique
>>>>>> 91128 Palaiseau Cedex France
>>>>>> tel : 33 1 69 33 42 52
>>>>>> fax: 33 1 69 33 49 49
>>>>>> email: <mailto:amari at cpht.polytechnique.fr>
>>>>>> URL : http://www.cpht.polytechnique.fr/cpht/amari
>>>>>> 
>>>>>> 
>>>>>> 
>>>>>> 
>>>>>> 
>>>> 
>>>> --------------------------------------------
>>>> T. Amari
>>>> Centre de Physique Theorique
>>>> Ecole Polytechnique
>>>> 91128 Palaiseau Cedex France
>>>> tel : 33 1 69 33 42 52
>>>> fax: 33 1 69 33 49 49
>>>> email: <mailto:amari at cpht.polytechnique.fr>
>>>> URL : http://www.cpht.polytechnique.fr/cpht/amari
>>>> 
>>>> 
>>>> 
>>>> 
>>>> 
>> 
>> --------------------------------------------
>> T. Amari
>> Centre de Physique Theorique
>> Ecole Polytechnique
>> 91128 Palaiseau Cedex France
>> tel : 33 1 69 33 42 52
>> fax: 33 1 69 33 49 49
>> email: <mailto:amari at cpht.polytechnique.fr>
>> URL : http://www.cpht.polytechnique.fr/cpht/amari
>> 
>> 
>> 
>> 
>> 
> <makefile.txt>

--------------------------------------------
T. Amari
Centre de Physique Theorique
Ecole Polytechnique
91128 Palaiseau Cedex France
tel : 33 1 69 33 42 52
fax: 33 1 69 33 49 49
email: <mailto:amari at cpht.polytechnique.fr>
URL : http://www.cpht.polytechnique.fr/cpht/amari

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