[petsc-users] Compile Errors with ifort 11.1

[Tahar Amari]

Great thanks, it seems that -lpetsc alone works .

 I will follow this advice regarding the makefile, for the reason you gave.
 Where should I get a typical makefile to modify please ?

Tahar


Le 12 nov. 2010 à 18:34, Satish Balay a écrit :

> Make sure your compiles have all the flags listed here..
> 
> Its best to use petsc makefile formats so that this info is
> automatically picked up from the petsc config files. [and not tweak
> user makefiles for every install of petsc..]
> 
> Satish
> 
> On Fri, 12 Nov 2010, Tahar Amari wrote:
> 
>> You are right.
>> 
>> Here is what I got
>> 
>> 
>> timac> make getincludedirs getlinklibs
>> -I/Data/Poub1/petsc-3.1-p5/macx/include -I/Data/Poub1/petsc-3.1-p5/include -I/Data/Poub1/petsc-3.1-p5/macx/include
>> -L/Data/Poub1/petsc-3.1-p5/macx/lib -L/Data/Poub1/petsc-3.1-p5/macx/lib -L/Data/Poub1/petsc-3.1-p5/macx/lib -lpetsc -L/usr/X11R6/lib -lX11 -L/Data/Poub1/petsc-3.1-p5/macx/lib -lparmetis -lmetis -lflapack -lfblas -L/Data/Poub1/petsc-3.1-p5/macx/lib -L/usr/lib/gcc/i686-apple-darwin10/4.2.1/x86_64 -L/usr/lib/i686-apple-darwin10/4.2.1 -L/opt/intel/Compiler/11.1/088/lib -L/opt/intel/Compiler/11.1/088/Frameworks/mkl/lib/em64t -L/usr/lib/gcc/i686-apple-darwin10/4.2.1 -ldl -lpmpich -lmpich -lSystem -lmpichf90 -lifport -lifcore -limf -lsvml -lipgo -lgcc_s.10.5 -lSystemStubs -lmx -lirc -lpthread -ldl -lpmpich -lmpich -lSystem -ldl
>> 
>> 
>> What does it mean please for me to change in my makefiles ?
>> 
>> Do you mean that I should remove any link other than -lpetsc ?
>> 
>> Great thanks
>> 
>> Tahar
>> 
>> 
>> 
>> 
>> 
>> 
>> 
>> 
>> Le 12 nov. 2010 à 18:26, Satish Balay a écrit :
>> 
>>> Looks like you are not using PETSc makefiles - and upgrading from
>>> older release to petsc-3.1
>>> 
>>> Currently there is only one library for petsc [-lpetsc]
>>> 
>>> Check:
>>> cd $PETSC_DIR
>>> make getincludedirs getlinklibs
>>> 
>>> Satish
>>> 
>>> On Fri, 12 Nov 2010, Tahar Amari wrote:
>>> 
>>>> Many thanks. This is solved.
>>>> 
>>>> Now at link I have the library not found. Any idea ?
>>>> 
>>>> 
>>>> -L/usr/local/petsc/macx/lib -lpetscsnes -lpetscvec -lpetscmat -lpetsccontrib -lpetscts -lpetscdm -lpetscksp -lpetsc -lmpich -lpmpich -lfmpich -lmpichf90 -lparmetis -lmetis -lfblas -lflapack
>>>> ld: library not found for -lpetscsnes
>>>> 
>>>> 
>>>> Tahar
>>>> 
>>>> 
>>>> Le 12 nov. 2010 à 18:17, Satish Balay a écrit :
>>>> 
>>>>> Looks like this is related to the following:
>>>>> http://www.mcs.anl.gov/petsc/petsc-as/documentation/changes/31.html
>>>>> # petsc.h and petscdef.h are replaced with petscsys.h and petscsysdef.h; while petsc.h now includes ALL PETSc include files.
>>>>> 
>>>>> Try removing all includes other than 'petsc.h' from your code.
>>>>> 
>>>>> Satish
>>>>> 
>>>>> On Fri, 12 Nov 2010, Tahar Amari wrote:
>>>>> 
>>>>>> Hello,
>>>>>> 
>>>>>> While compiling one of my code with ifort , I have the following error pointing 
>>>>>> towards petscvec.h .
>>>>>> 
>>>>>> Any idea about this posssible kind of error please ? Any option of ifort to use ?
>>>>>> 
>>>>>> Many thanks
>>>>>> 
>>>>>> Tahar
>>>>>> 
>>>>>> 
>>>>>> ifort -assume byterecl  -I/usr/local/petsc/ -I/usr/local/petsc//include -I/usr/local/petsc//include/finclude -I/usr/local/petsc//macx/include -I/usr/X11R6/include/X11 -DPETSC_HAVE_PARMETIS -DPETSC_USE_DEBUG -DPETSC_USE_LOG -DPETSC_USE_BOPT_g -DPETSC_USE_STACK -DPETSC_AVOID_MPIF_H -c petsc.fpp
>>>>>> /usr/local/petsc//include/finclude/petscvec.h(10): error #6418: This name has already been assigned a data type.   [NORM_1]
>>>>>>    integer(kind=selected_int_kind(5)) NORM_1
>>>>>> 
>>>>>> 
>>>>>> 
>>>>>> --------------------------------------------
>>>>>> T. Amari
>>>>>> Centre de Physique Theorique
>>>>>> Ecole Polytechnique
>>>>>> 91128 Palaiseau Cedex France
>>>>>> tel : 33 1 69 33 42 52
>>>>>> fax: 33 1 69 33 49 49
>>>>>> email: <mailto:amari at cpht.polytechnique.fr>
>>>>>> URL : http://www.cpht.polytechnique.fr/cpht/amari
>>>>>> 
>>>>>> 
>>>>>> 
>>>>>> 
>>>>>> 
>>>>> 
>>>> 
>>>> --------------------------------------------
>>>> T. Amari
>>>> Centre de Physique Theorique
>>>> Ecole Polytechnique
>>>> 91128 Palaiseau Cedex France
>>>> tel : 33 1 69 33 42 52
>>>> fax: 33 1 69 33 49 49
>>>> email: <mailto:amari at cpht.polytechnique.fr>
>>>> URL : http://www.cpht.polytechnique.fr/cpht/amari
>>>> 
>>>> 
>>>> 
>>>> 
>>>> 
>> 
>> --------------------------------------------
>> T. Amari
>> Centre de Physique Theorique
>> Ecole Polytechnique
>> 91128 Palaiseau Cedex France
>> tel : 33 1 69 33 42 52
>> fax: 33 1 69 33 49 49
>> email: <mailto:amari at cpht.polytechnique.fr>
>> URL : http://www.cpht.polytechnique.fr/cpht/amari
>> 
>> 
>> 
>> 
>> 

--------------------------------------------
T. Amari
Centre de Physique Theorique
Ecole Polytechnique
91128 Palaiseau Cedex France
tel : 33 1 69 33 42 52
fax: 33 1 69 33 49 49
email: <mailto:amari at cpht.polytechnique.fr>
URL : http://www.cpht.polytechnique.fr/cpht/amari




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