[petsc-users] Errors while install pets-dev

Satish Balay balay at mcs.anl.gov
Mon Jan 25 22:57:45 CST 2010 

Ok - is your manual install '2.  access tarballs directly from our
mercurial server.?
http://www.mcs.anl.gov/petsc/petsc-as/developers/index.html


And do you have problem with --download-pacakge options due to the
proxy issues? If so - that might explain the problem.

petsc-dev - with 'hg' - or with 'tarballs from mercurial' server
require sowing package for the fortran interface. If configure is
unable to install sowing - then fortran interface is not generated.

Thus unresolved symbol errors when compiling fortran examples.

This can be verified by looking at configure.log and make.log for this
build.

Satish


On Mon, 25 Jan 2010, Satish Balay wrote:

> 
> On Mon, 25 Jan 2010, (Rebecca) Xuefei YUAN wrote:
> 
> > Dear Satish,
> > 
> > I switched to install it manually 
> 
> What do you mean? Did you get the nightly tarball?
> 
> > and encounter an error when "make test".
> 
> Did the build go through fine without errors??
> 
> Send over configure.log and make.log to petsc-maint.
> 
> Satish
> 
> > Here are error messages:
> > 
> > Completed building libraries
> > =========================================
> > Now to check if the libraries are working do: make test
> > =========================================
> > rebecca at YuanWork:~/soft/petsc-dev$ make test
> > Running test examples to verify correct installation
> > C/C++ example src/snes/examples/tutorials/ex19 run successfully with 1 MPI
> > process
> > C/C++ example src/snes/examples/tutorials/ex19 run successfully with 2 MPI
> > processes
> > --------------Error detected during compile or link!-----------------------
> > See http://www.mcs.anl.gov/petsc/petsc-2/documentation/troubleshooting.html
> > /home/rebecca/soft/petsc-dev/linux-gnu-c-debug/bin/mpif90 -c  -Wall
> > -Wno-unused-variable -g
> > -I/home/rebecca/soft/petsc-dev/linux-gnu-c-debug/include
> > -I/home/rebecca/soft/petsc-dev/include
> > -I/home/rebecca/soft/petsc-dev/linux-gnu-c-debug/include
> > -I/home/rebecca/soft/petsc-dev/linux-gnu-c-debug/include
> > -I/home/rebecca/soft/petsc-dev/linux-gnu-c-debug/include    -o ex5f.o ex5f.F
> > /home/rebecca/soft/petsc-dev/linux-gnu-c-debug/bin/mpif90 -Wall
> > -Wno-unused-variable -g  -o ex5f ex5f.o
> > -Wl,-rpath,/home/rebecca/soft/petsc-dev/linux-gnu-c-debug/lib
> > -L/home/rebecca/soft/petsc-dev/linux-gnu-c-debug/lib -lpetscsnes -lpetscksp
> > -lpetscdm -lpetscmat -lpetscvec -lpetsc   -lX11
> > -Wl,-rpath,/home/rebecca/soft/petsc-dev/linux-gnu-c-debug/lib
> > -L/home/rebecca/soft/petsc-dev/linux-gnu-c-debug/lib -lflapack -lfblas -lnsl
> > -lrt -lm -L/home/rebecca/soft/petsc-dev/linux-gnu-c-debug/lib
> > -L/usr/lib/gcc/i486-linux-gnu/4.2.4 -ldl -lmpich -lopa -lpthread -lrt -lgcc_s
> > -lmpichf90 -lgfortran -lm -lm -ldl -lmpich -lopa -lpthread -lrt -lgcc_s -ldl
> > ex5f.o: In function `MAIN__':
> > /home/rebecca/soft/petsc-dev/src/snes/examples/tutorials/ex5f.F:103: undefined
> > reference to `snescreate_'
> > /home/rebecca/soft/petsc-dev/src/snes/examples/tutorials/ex5f.F:120: undefined
> > reference to `dacreateglobalvector_'
> > /home/rebecca/soft/petsc-dev/src/snes/examples/tutorials/ex5f.F:121: undefined
> > reference to `vecduplicate_'
> > /home/rebecca/soft/petsc-dev/src/snes/examples/tutorials/ex5f.F:131: undefined
> > reference to `dagetcorners_'
> > /home/rebecca/soft/petsc-dev/src/snes/examples/tutorials/ex5f.F:133: undefined
> > reference to `dagetghostcorners_'
> > /home/rebecca/soft/petsc-dev/src/snes/examples/tutorials/ex5f.F:211: undefined
> > reference to `snessetfromoptions_'
> > /home/rebecca/soft/petsc-dev/src/snes/examples/tutorials/ex5f.F:223: undefined
> > reference to `snesgetiterationnumber_'
> > /home/rebecca/soft/petsc-dev/src/snes/examples/tutorials/ex5f.F:235: undefined
> > reference to `matdestroy_'
> > /home/rebecca/soft/petsc-dev/src/snes/examples/tutorials/ex5f.F:236: undefined
> > reference to `matdestroy_'
> > /home/rebecca/soft/petsc-dev/src/snes/examples/tutorials/ex5f.F:237: undefined
> > reference to `vecdestroy_'
> > /home/rebecca/soft/petsc-dev/src/snes/examples/tutorials/ex5f.F:238: undefined
> > reference to `vecdestroy_'
> > /home/rebecca/soft/petsc-dev/src/snes/examples/tutorials/ex5f.F:239: undefined
> > reference to `snesdestroy_'
> > /home/rebecca/soft/petsc-dev/src/snes/examples/tutorials/ex5f.F:240: undefined
> > reference to `dadestroy_'
> > ex5f.o: In function `forminitialguess_':
> > /home/rebecca/soft/petsc-dev/src/snes/examples/tutorials/ex5f.F:286: undefined
> > reference to `dmgetlocalvector_'
> > /home/rebecca/soft/petsc-dev/src/snes/examples/tutorials/ex5f.F:299: undefined
> > reference to `dalocaltoglobal_'
> > /home/rebecca/soft/petsc-dev/src/snes/examples/tutorials/ex5f.F:300: undefined
> > reference to `dmrestorelocalvector_'
> > ex5f.o: In function `formjacobianlocal_':
> > /home/rebecca/soft/petsc-dev/src/snes/examples/tutorials/ex5f.F:523: undefined
> > reference to `matsetvalueslocal_'
> > /home/rebecca/soft/petsc-dev/src/snes/examples/tutorials/ex5f.F:538: undefined
> > reference to `matsetvalueslocal_'
> > /home/rebecca/soft/petsc-dev/src/snes/examples/tutorials/ex5f.F:542: undefined
> > reference to `matassemblybegin_'
> > /home/rebecca/soft/petsc-dev/src/snes/examples/tutorials/ex5f.F:543: undefined
> > reference to `matassemblyend_'
> > collect2: ld returned 1 exit status
> > make[3]: [ex5f] Error 1 (ignored)
> > /bin/rm -f ex5f.o
> > Completed test examples
> > 
> > What could possibly wrong?
> > 
> > Thanks!
> > 
> > Rebecca
> > 
> > 
> > 
> > 
> > Quoting Satish Balay <balay at mcs.anl.gov>:
> > 
> > > Sorry - forgot to mention the url
> > > 
> > > http://mail.openjdk.java.net/pipermail/build-dev/2007-December/000628.html
> > > 
> > > Satish
> > > 
> > > On Mon, 25 Jan 2010, Satish Balay wrote:
> > > 
> > > > Do you have to use proxy for your http connections? If so - perhaps
> > > > you can try adding the settings to ~/.hgrc - as this url indicates and
> > > > see if it fixes the problem.
> > > > 
> > > > Satish
> > > > 
> > > > On Mon, 25 Jan 2010, (Rebecca) Xuefei YUAN wrote:
> > > > 
> > > > > Hi,All,
> > > > > 
> > > > > I try to install a pets-dev locally according to the instruction
> > > > > 
> > > > > http://www.mcs.anl.gov/petsc/petsc-as/developers/index.html
> > > > > 
> > > > > I have installed mercurial, but when I get the second step, I get  some
> > > > > error
> > > > > like:
> > > > > 
> > > > > rebecca at YuanWork:~/soft$ hg clone
> > > > > http://petsc.cs.iit.edu/petsc/petsc-dev
> > > > > destination directory: petsc-dev
> > > > > abort: error: Name or service not known
> > > > > 
> > > > > Is there anything wrong?
> > > > > 
> > > > > Thanks!
> > > > > 
> > > > > 
> > > > 
> > > > 
> > > 
> > > 
> > > 
> > 
> > 
> > 
> > 
> 
>

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