Hello for compiled problem

Matthew Knepley knepley at gmail.com
Tue Mar 10 11:07:05 CDT 2009 

On Tue, Mar 10, 2009 at 10:59 AM, Wei-Dong Lian <weidong.lian at gmail.com>wrote:

> Hello everyone,
>
> I compiled the petsc-3.0.0-p3 with GCC 3.4.3 under linux 64. But the
> compiler gave me the following information, see result_1.
> I also ran the "make test" and it worked successfully, but when I linked
> petsc to compile my programme, it told me that information see results_2.
> Any suggestion will be appreciated.
> Thank you in advance.


1) Any report like this should be sent to petsc-maint at mcs.anl.gov because we
need configure.log and make*.log.

2) The warning about -PIC comes about because we cannot parse the warning
messages from your compiler. We can try to
     add this in when we get the log.

3) If 'make test' works and your link does not, then you have constructed
your link line incorrectly. Are you using the PETSc makefiles?

  Matt


>
> Weidong
>
> $$$$$$$$$$$$$$$$$$$$$Result_1$$$$$$$$$$$$$$$$$$$$$$$$$$$$$
> /ftn-custom
> g++: option « -PIC » non reconnue
> libfast in:
> /usr/local/temp/lian/Develop/latest/Solver/petscSeq/src/ts/impls
> libfast in:
> /usr/local/temp/lian/Develop/latest/Solver/petscSeq/src/ts/impls/explicit
> libfast in:
> /usr/local/temp/lian/Develop/latest/Solver/petscSeq/src/ts/impls/explicit/euler
> g++: option « -PIC » non reconnue
> libfast in:
> /usr/local/temp/lian/Develop/latest/Solver/petscSeq/src/ts/impls/explicit/rk
> g++: option « -PIC » non reconnue
> libfast in:
> /usr/local/temp/lian/Develop/latest/Solver/petscSeq/src/ts/impls/explicit/rk/ftn-auto
> g++: option « -PIC » non reconnue
> libfast in:
> /usr/local/temp/lian/Develop/latest/Solver/petscSeq/src/ts/impls/implicit
> libfast in:
> /usr/local/temp/lian/Develop/latest/Solver/petscSeq/src/ts/impls/implicit/beuler
> g++: option « -PIC » non reconnue
> libfast in:
> /usr/local/temp/lian/Develop/latest/Solver/petscSeq/src/ts/impls/implicit/cn
>
>
> #####################################results_2################################
> /usr/local/temp/lian/Develop/Solver/petscSeq/x86_64_linux/lib/libpetscdm.a(daint.o)(.text+0x2aaf):
> In function `DAGetWireBasketInterpolation(_p_DA*, _p_Mat*, MatReuse,
> _p_Mat**)':
> /usr/local/temp/lian/Develop/latest/Solver/petscSeq/src/dm/da/utils/daint.c:201:
> undefined reference to `PetscTableCreate(int, _n_PetscTable**)'
> /usr/local/temp/lian/Develop/Solver/petscSeq/x86_64_linux/lib/libpetscdm.a(daint.o)(.text+0x2b3d):/usr/local/temp/lian/Develop/latest/Solver/petscSeq/src/dm/da/utils/daint.c:203:
> undefined reference to `PetscTableAddCount(_n_PetscTable*, int)'
> /usr/local/temp/lian/Develop/Solver/petscSeq/x86_64_linux/lib/libpetscdm.a(daint.o)(.text+0x2ba1):/usr/local/temp/lian/Develop/latest/Solver/petscSeq/src/dm/da/utils/daint.c:205:
> undefined reference to `PetscTableGetCount(_n_PetscTable*, int*)'
> /usr/local/temp/lian/Develop/Solver/petscSeq/x86_64_linux/lib/libpetscdm.a(daint.o)(.text+0x2d24):/usr/local/temp/lian/Develop/latest/Solver/petscSeq/src/dm/da/utils/daint.c:209:
> undefined reference to `PetscTableFind(_n_PetscTable*, int, int*)'
> /usr/local/temp/lian/Develop/Solver/petscSeq/x86_64_linux/lib/libpetscdm.a(daint.o)(.text+0x2d8d):/usr/local/temp/lian/Develop/latest/Solver/petscSeq/src/dm/da/utils/daint.c:212:
> undefined reference to `PetscTableDestroy(_n_PetscTable*)'
> /usr/local/temp/lian/Develop/Solver/petscSeq/x86_64_linux/lib/libpetscdm.a(daint.o)(.text+0x5adf):
> In function `DAGetFaceInterpolation(_p_DA*, _p_Mat*, MatReuse, _p_Mat**)':
>
> #####################################################################################
>
>
> My configuration of petsc:
> &&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&
>
>                             Pushing language C
>                             Popping language C
>                             Pushing language Cxx
>                             Popping language Cxx
>                             Pushing language FC
>                             Popping language FC
> sh: /bin/sh
> /usr/local/temp/lian/Develop/latest/Solver/OpenSource/petsc-3.0.0-p3/config/BuildSystem/config/packages/config.gue
> ss
> Executing: /bin/sh
> /usr/local/temp/lian/Develop/latest/Solver/OpenSource/petsc-3.0.0-p3/config/BuildSystem/config/packages/con
> fig.guess
> sh: x86_64-unknown-linux-gnu
>
> sh: /bin/sh
> /usr/local/temp/lian/Develop/latest/Solver/OpenSource/petsc-3.0.0-p3/config/BuildSystem/config/packages/config.sub
>  x86_64-unknown-linux-gnu
>
> Executing: /bin/sh
> /usr/local/temp/lian/Develop/latest/Solver/OpenSource/petsc-3.0.0-p3/config/BuildSystem/config/packages/con
> fig.sub x86_64-unknown-linux-gnu
>
> sh: x86_64-unknown-linux-gnu
>
>
>
> ================================================================================
>
> ================================================================================
> Starting Configure Run at Tue Mar 10 16:23:30 2009
> Configure Options: --configModules=PETSc.Configure
> --optionsModule=PETSc.compilerOptions --with-cc=gcc --with-fc=g77 --with-cx
> x=g++ --with-mpi=0 --with-x=0 --with-clanguage=cxx --with-shared=1
> --with-dynamic=1
> Working directory:
> /usr/local/temp/lian/Develop/latest/Solver/OpenSource/petsc-3.0.0-p3
> Machine uname:
> ('Linux', 'frioul', '2.6.9-22.ELsmp', '#1 SMP Sat Oct 8 21:32:36 BST 2005',
> 'x86_64')
> Python version:
> 2.3.4 (#1, Feb 17 2005, 21:01:10)
> [GCC 3.4.3 20041212 (Red Hat 3.4.3-9.EL4)]
>
> ================================================================================
>         Pushing language C
>         Popping language C
>         Pushing language Cxx
>         Popping language Cxx
>         Pushing language FC
>         Popping language FC
>
> ================================================================================
> TEST configureExternalPackagesDir from
> config.framework(/usr/local/temp/lian/Develop/latest/Solver/OpenSource/petsc-3.0.0-p3/c
> onfig/BuildSystem/config/framework.py:815)
> TESTING: configureExternalPackagesDir from
> config.framework(config/BuildSystem/config/framework.py:815)
>
> ================================================================================
> TEST configureLibrary from
> PETSc.packages.NetCDF(/usr/local/temp/lian/Develop/latest/Solver/OpenSource/petsc-3.0.0-p3/config/P
> ETSc/packages/NetCDF.py:10)
> TESTING: configureLibrary from
> PETSc.packages.NetCDF(config/PETSc/packages/NetCDF.py:10)
>   Find a NetCDF installation and check if it can work with PETSc
>
> ================================================================================
> TEST configureLibrary from
> PETSc.packages.PVODE(/usr/local/temp/lian/Develop/latest/Solver/OpenSource/petsc-3.0.0-p3/config/PE
> TSc/packages/PVODE.py:10)
> TESTING: configureLibrary from
> PETSc.packages.PVODE(config/PETSc/packages/PVODE.py:10)
>   Find a PVODE installation and check if it can work with PETSc
>
> ================================================================================
> TEST configureDebuggers from
> PETSc.utilities.debuggers(/usr/local/temp/lian/Develop/latest/Solver/OpenSource/petsc-3.0.0-p3/co
> nfig/PETSc/utilities/debuggers.py:22)
> TESTING: configureDebuggers from
> PETSc.utilities.debuggers(config/PETSc/utilities/debuggers.py:22)
>   Find a default debugger and determine its arguments
>
>


-- 
What most experimenters take for granted before they begin their experiments
is infinitely more interesting than any results to which their experiments
lead.
-- Norbert Wiener
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