[petsc-dev] Cannot locate file: share/petsc/datafiles/matrices/small

[Antonio T. sagitter]

Okay. I will try to set correctly the DATAFILESPATH options.

I see even this error:

not ok 
vec_is_sf_tutorials-ex1_4+sf_window_sync-fence_sf_window_flavor-create # 
Error code: 68

#	PetscSF Object: 4 MPI processes

#	  type: window

#	  [0] Number of roots=3, leaves=2, remote ranks=2

#	  [0] 0 <- (3,1)

#	  [0] 1 <- (1,0)

#	  [1] Number of roots=2, leaves=3, remote ranks=2

#	  [1] 0 <- (0,1)

#	  [1] 1 <- (2,0)

#	  [1] 2 <- (0,2)

#	  [2] Number of roots=2, leaves=3, remote ranks=3

#	  [2] 0 <- (1,1)

#	  [2] 1 <- (3,0)

#	  [2] 2 <- (0,2)

#	  [3] Number of roots=2, leaves=3, remote ranks=2

#	  [3] 0 <- (2,1)

#	  [3] 1 <- (0,0)

#	  [3] 2 <- (0,2)

#	  [0] Roots referenced by my leaves, by rank

#	  [0] 1: 1 edges

#	  [0]    1 <- 0

#	  [0] 3: 1 edges

#	  [0]    0 <- 1

#	  [1] Roots referenced by my leaves, by rank

#	  [1] 0: 2 edges

#	  [1]    0 <- 1

#	  [1]    2 <- 2

#	  [1] 2: 1 edges

#	  [1]    1 <- 0

#	  [2] Roots referenced by my leaves, by rank

#	  [2] 0: 1 edges

#	  [2]    2 <- 2

#	  [2] 1: 1 edges

#	  [2]    0 <- 1

#	  [2] 3: 1 edges

#	  [2]    1 <- 0

#	  [3] Roots referenced by my leaves, by rank

#	  [3] 0: 2 edges

#	  [3]    1 <- 0

#	  [3]    2 <- 2

#	  [3] 2: 1 edges

#	  [3]    0 <- 1

#	  current flavor=CREATE synchronization=FENCE MultiSF sort=rank-order

#	    current info=MPI_INFO_NULL

#	[buildhw-x86-09:1135574] *** An error occurred in MPI_Accumulate

#	[buildhw-x86-09:1135574] *** reported by process [3562602497,3]

#	[buildhw-x86-09:1135574] *** on win rdma window 4

#	[buildhw-x86-09:1135574] *** MPI_ERR_RMA_RANGE: invalid RMA address range

#	[buildhw-x86-09:1135574] *** MPI_ERRORS_ARE_FATAL (processes in this 
win will now abort,

#	[buildhw-x86-09:1135574] ***    and potentially your MPI job)

#	[buildhw-x86-09.iad2.fedoraproject.org:1135567] 3 more processes have 
sent help message help-mpi-errors.txt / mpi_errors_are_fatal

#	[buildhw-x86-09.iad2.fedoraproject.org:1135567] Set MCA parameter 
"orte_base_help_aggregate" to 0 to see all help / error messages

Looks like an error related to OpenMPI-4*:
https://github.com/open-mpi/ompi/issues/6374

Thank you.

On 9/12/21 18:09, Pierre Jolivet wrote:
> Hello,
> Did you copy the files from https://gitlab.com/petsc/datafiles 
> <https://gitlab.com/petsc/datafiles> before the make check?
> cfd.1.10 is not part of https://gitlab.com/petsc/petsc 
> <https://gitlab.com/petsc/petsc>, so you either need to copy the files 
> from the datafiles repository, or remove 
> the --DATAFILESPATH=/home/sagitter/rpmbuild/BUILD/petsc-3.15.4/petsc-3.15.4/share/petsc/datafiles 
> configure option.
> 
> Thanks,
> Pierre
> 
>> On 12 Sep 2021, at 6:02 PM, Antonio T. sagitter 
>> <sagitter at fedoraproject.org <mailto:sagitter at fedoraproject.org>> wrote:
>>
>> Hi all.
>>
>> This error is repeated when the tests are compiled in PETSc-3.15.4 
>> compilation:
>> https://paste.in/MhdNjf <https://paste.in/MhdNjf>
>>
>> This happens in Fedora 34 x86_64 with gcc-11.2.1
>>
>> make.log and configure.log are attached
>> -- 
>> ---
>> Antonio Trande
>> Fedora Project
>> mailto: sagitter at fedoraproject.org
>> GPG key: 0x29FBC85D7A51CC2F
>> GPG key server: https://keyserver1.pgp.com/
>> <make_configure.zip><OpenPGP_0x29FBC85D7A51CC2F.asc>
> 

-- 
---
Antonio Trande
Fedora Project
mailto: sagitter at fedoraproject.org
GPG key: 0x29FBC85D7A51CC2F
GPG key server: https://keyserver1.pgp.com/