[petsc-dev] libpetsc.so: undefined references

[Stefano Zampini]

I knew this was coming....
https://gitlab.com/petsc/petsc/-/issues/997

Il Sab 2 Ott 2021, 15:48 Antonio T. sagitter <sagitter at fedoraproject.org>
ha scritto:

> Hi all.
>
> In PETSc-3.16.0, the linker is not working because of these undefined
> references (see https://pastebin.com/izGTfmMp):
>
> /usr/bin/ld: x86_64/lib/libpetsc.so: undefined reference to `operator
> delete(void*, unsigned long)'
>
> /usr/bin/ld: x86_64/lib/libpetsc.so: undefined reference to `__cxa_rethrow'
>
> /usr/bin/ld: x86_64/lib/libpetsc.so: undefined reference to
> `__gxx_personality_v0'
>
> /usr/bin/ld: x86_64/lib/libpetsc.so: undefined reference to `operator
> new(unsigned long)'
>
> /usr/bin/ld: x86_64/lib/libpetsc.so: undefined reference to
> `std::__throw_bad_alloc()'
>
> /usr/bin/ld: x86_64/lib/libpetsc.so: undefined reference to
> `std::terminate()'
>
> /usr/bin/ld: x86_64/lib/libpetsc.so: undefined reference to
> `std::__throw_bad_array_new_length()'
>
> /usr/bin/ld: x86_64/lib/libpetsc.so: undefined reference to `typeinfo
> for std::exception'
>
> /usr/bin/ld: x86_64/lib/libpetsc.so: undefined reference to
> `__cxa_begin_catch'
>
> /usr/bin/ld: x86_64/lib/libpetsc.so: undefined reference to
> `__cxa_end_catch'
>
> /usr/bin/ld: x86_64/lib/libpetsc.so: undefined reference to
> `std::__throw_length_error(char const*)'
>
> collect2: error: ld returned 1 exit status
>
> There are also
>
> $ ldd -r build/BUILD/petsc-3.16.0/petsc-3.16.0/x86_64/lib/libpetsc.so'
> Start: shell
>
>         linux-vdso.so.1 (0x00007fffbf347000)
>
>         libsuperlu.so.5.2 => /lib64/libsuperlu.so.5.2 (0x00007f00dad0c000)
>
>         libflexiblas.so.3 => /lib64/libflexiblas.so.3 (0x00007f00da95a000)
>
>         libcgns.so.4.2 => /lib64/libcgns.so.4.2 (0x00007f00da873000)
>
>         libhdf5.so.103 => /lib64/libhdf5.so.103 (0x00007f00da4d8000)
>
>         libm.so.6 => /lib64/libm.so.6 (0x00007f00da3f8000)
>
>         libX11.so.6 => /lib64/libX11.so.6 (0x00007f00da2ae000)
>
>         libgcc_s.so.1 => /lib64/libgcc_s.so.1 (0x00007f00da294000)
>
>         libc.so.6 => /lib64/libc.so.6 (0x00007f00da08b000)
>
>         libgfortran.so.5 => /lib64/libgfortran.so.5 (0x00007f00d9dde000)
>
>         libquadmath.so.0 => /lib64/libquadmath.so.0 (0x00007f00d9d94000)
>
>         /lib64/ld-linux-x86-64.so.2 (0x00007f00dc18b000)
>
>         libsz.so.2 => /lib64/libsz.so.2 (0x00007f00d9d8a000)
>
>         libz.so.1 => /lib64/libz.so.1 (0x00007f00d9d6e000)
>
>         libxcb.so.1 => /lib64/libxcb.so.1 (0x00007f00d9d43000)
>
>         libXau.so.6 => /lib64/libXau.so.6 (0x00007f00d9d3d000)
>
> undefined symbol: _ZTISt9exception
> (build/BUILD/petsc-3.16.0/petsc-3.16.0/x86_64/lib/libpetsc.so)
>
> undefined symbol: __gxx_personality_v0
> (build/BUILD/petsc-3.16.0/petsc-3.16.0/x86_64/lib/libpetsc.so)
>
> undefined symbol: _ZdlPvm
> (build/BUILD/petsc-3.16.0/petsc-3.16.0/x86_64/lib/libpetsc.so)
>
> undefined symbol: __cxa_rethrow
> (build/BUILD/petsc-3.16.0/petsc-3.16.0/x86_64/lib/libpetsc.so)
>
> undefined symbol: _Znwm
> (build/BUILD/petsc-3.16.0/petsc-3.16.0/x86_64/lib/libpetsc.so)
>
> undefined symbol: _ZSt17__throw_bad_allocv
> (build/BUILD/petsc-3.16.0/petsc-3.16.0/x86_64/lib/libpetsc.so)
>
> undefined symbol: _ZSt9terminatev
> (build/BUILD/petsc-3.16.0/petsc-3.16.0/x86_64/lib/libpetsc.so)
>
> undefined symbol: _ZSt28__throw_bad_array_new_lengthv
> (build/BUILD/petsc-3.16.0/petsc-3.16.0/x86_64/lib/libpetsc.so)
>
> undefined symbol: __cxa_begin_catch
> (build/BUILD/petsc-3.16.0/petsc-3.16.0/x86_64/lib/libpetsc.so)
>
> undefined symbol: __cxa_end_catch
> (build/BUILD/petsc-3.16.0/petsc-3.16.0/x86_64/lib/libpetsc.so)
>
> undefined symbol: _ZSt20__throw_length_errorPKc
> (build/BUILD/petsc-3.16.0/petsc-3.16.0/x86_64/lib/libpetsc.so)
>
>
>
> I'm attaching configure.log and make.log
>
> --
> ---
> Antonio Trande
> Fedora Project
> mailto: sagitter at fedoraproject.org
> GPG key: 0x29FBC85D7A51CC2F
> GPG key server: https://keyserver1.pgp.com/
>
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