[petsc-dev] kokkos error

Sun Nov 21 22:22:00 CST 2021

You can add -v to the offending command line to see what happened, i.e.,
how nvcc_wrapper passed options to g++.

--Junchao Zhang

On Sun, Nov 21, 2021 at 12:05 PM Mark Adams <mfadams at lbl.gov> wrote:

> Any idea what is going wrong with this?
>
> Using PETSC_DIR=/global/homes/m/madams/petsc and
> PETSC_ARCH=arch-perlmutter-opt-gcc-kokkos-cuda
> C/C++ example src/snes/tutorials/ex19 run successfully with 1 MPI process
> C/C++ example src/snes/tutorials/ex19 run successfully with 2 MPI processes
> C/C++ example src/snes/tutorials/ex19 run successfully with cuda
> gmake[3]: [/global/homes/m/madams/petsc/lib/petsc/conf/rules:301:
> ex3k.PETSc] Error 2 (ignored)
> *******************Error detected during compile or
> link!*******************
> See http://www.mcs.anl.gov/petsc/documentation/faq.html
> /global/homes/m/madams/petsc/src/snes/tutorials ex3k
>
> *********************************************************************************
>
> PATH=/global/homes/m/madams/petsc/arch-perlmutter-opt-gcc-kokkos-cuda/lib:/global/common/software/nersc/shasta2105/arm-forge/21.0.2-linux-x86_64/bin:/global/common/software/nersc/cos1.3/cuda/11.3.0/bin:/opt/cray/pe/perftools/21.10.0/bin:/opt/cray/pe/papi/
> 6.0.0.10/bin:/opt/cray/pe/gcc/9.3.0/bin:/opt/cray/pe/craype/2.7.11/bin:/global/common/software/nersc/shasta2105/python/3.8-anaconda-2021.05/bin:/global/homes/m/madams/.local/perlmutter/3.8-anaconda-2021.05/bin:/global/common/software/nersc/shasta2105/cmake/git-master/bin:/global/common/software/nersc/bin:/opt/cray/libfabric/1.11.0.4.79/bin:/usr/local/bin:/usr/bin:/bin:/usr/lib/mit/bin:/opt/cray/pe/bin:`dirname
> <http://6.0.0.10/bin:/opt/cray/pe/gcc/9.3.0/bin:/opt/cray/pe/craype/2.7.11/bin:/global/common/software/nersc/shasta2105/python/3.8-anaconda-2021.05/bin:/global/homes/m/madams/.local/perlmutter/3.8-anaconda-2021.05/bin:/global/common/software/nersc/shasta2105/cmake/git-master/bin:/global/common/software/nersc/bin:/opt/cray/libfabric/1.11.0.4.79/bin:/usr/local/bin:/usr/bin:/bin:/usr/lib/mit/bin:/opt/cray/pe/bin:dirname>
> /global/common/software/nersc/cos1.3/cuda/11.3.0/bin/nvcc`
> NVCC_WRAPPER_DEFAULT_COMPILER=CC
> /global/homes/m/madams/petsc/arch-perlmutter-opt-gcc-kokkos-cuda/bin/nvcc_wrapper
> --expt-extended-lambda -g -Xcompiler -rdynamic -DLANDAU_DIM=2
> -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -Xcompiler -fPIC -ccbin CC
> -std=c++17 -gencode arch=compute_80,code=sm_80  -Wno-deprecated-gpu-targets
> -I/opt/cray/pe/mpich/8.1.10/ofi/gnu/9.1/include -I/opt/cray/pe/libsci/
> 21.08.1.2/GNU/9.1/x86_64/include -I/opt/cray/pe/pmi/6.0.14/include
> -I/opt/cray/pe/dsmml/0.2.2/dsmml//include
> -I/opt/cray/xpmem/2.2.40-7.0.1.0_3.1__g1d7a24d.shasta/include
>  -I/global/homes/m/madams/petsc/include
> -I/global/homes/m/madams/petsc/arch-perlmutter-opt-gcc-kokkos-cuda/include
> -I/global/common/software/nersc/cos1.3/cuda/11.3.0/include    -g
> -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -fPIC -O3 -g
> -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -O3
> -L/opt/cray/pe/mpich/8.1.10/ofi/gnu/9.1/lib
> -L/opt/cray/pe/mpich/8.1.10/gtl/lib -L/opt/cray/pe/libsci/
> 21.08.1.2/GNU/9.1/x86_64/lib -L/opt/cray/pe/pmi/6.0.14/lib
> -L/opt/cray/pe/dsmml/0.2.2/dsmml//lib
> -L/opt/cray/xpmem/2.2.40-7.0.1.0_3.1__g1d7a24d.shasta/lib64
> -Wl,--as-needed,-lmpi_gnu_91,--no-as-needed
> -Wl,--as-needed,-lsci_gnu_82_mpi,--no-as-needed
> -Wl,--as-needed,-lsci_gnu_82,--no-as-needed
> -Wl,--as-needed,-ldsmml,--no-as-needed  -lpmi -lpmi2 -lmpi_gtl_cuda -ldl
> -lxpmem   ex3k.kokkos.cxx
>  -Wl,-rpath,/global/homes/m/madams/petsc/arch-perlmutter-opt-gcc-kokkos-cuda/lib
> -L/global/homes/m/madams/petsc/arch-perlmutter-opt-gcc-kokkos-cuda/lib
> -Wl,-rpath,/global/homes/m/madams/petsc/arch-perlmutter-opt-gcc-kokkos-cuda/lib
> -L/global/homes/m/madams/petsc/arch-perlmutter-opt-gcc-kokkos-cuda/lib
> -Wl,-rpath,/global/common/software/nersc/cos1.3/cuda/11.3.0/lib64
> -L/global/common/software/nersc/cos1.3/cuda/11.3.0/lib64
> -L/global/common/software/nersc/cos1.3/cuda/11.3.0/lib64/stubs
> -Wl,-rpath,/opt/cray/pe/mpich/8.1.10/ofi/gnu/9.1/lib
> -L/opt/cray/pe/mpich/8.1.10/ofi/gnu/9.1/lib
> -Wl,-rpath,/opt/cray/pe/mpich/8.1.10/gtl/lib
> -L/opt/cray/pe/mpich/8.1.10/gtl/lib -Wl,-rpath,/opt/cray/pe/libsci/
> 21.08.1.2/GNU/9.1/x86_64/lib -L/opt/cray/pe/libsci/
> 21.08.1.2/GNU/9.1/x86_64/lib -Wl,-rpath,/opt/cray/pe/pmi/6.0.14/lib
> -L/opt/cray/pe/pmi/6.0.14/lib -Wl,-rpath,/opt/cray/pe/dsmml/0.2.2/dsmml/lib
> -L/opt/cray/pe/dsmml/0.2.2/dsmml/lib
> -Wl,-rpath,/opt/cray/xpmem/2.2.40-7.0.1.0_3.1__g1d7a24d.shasta/lib64
> -L/opt/cray/xpmem/2.2.40-7.0.1.0_3.1__g1d7a24d.shasta/lib64
> -Wl,-rpath,/opt/cray/pe/gcc/9.3.0/snos/lib/gcc/x86_64-suse-linux/9.3.0
> -L/opt/cray/pe/gcc/9.3.0/snos/lib/gcc/x86_64-suse-linux/9.3.0
> -Wl,-rpath,/opt/cray/pe/gcc/9.3.0/snos/lib64
> -L/opt/cray/pe/gcc/9.3.0/snos/lib64
> -Wl,-rpath,/opt/cray/pe/gcc/9.3.0/snos/lib
> -L/opt/cray/pe/gcc/9.3.0/snos/lib -lpetsc -lkokkoskernels
> -lkokkoscontainers -lkokkoscore -lp4est -lsc -lparmetis -lmetis -lz
> -lcudart -lcufft -lcublas -lcusparse -lcusolver -lcurand -lcuda -lX11
> -lstdc++ -ldl -lpmi -lpmi2 -lmpi_gtl_cuda -lxpmem -lgfortran -lm
> -lmpifort_gnu_91 -lmpi_gnu_91 -lsci_gnu_82_mpi -lsci_gnu_82 -ldsmml
> -lgfortran -lquadmath -lpthread -lm -lgcc_s -lquadmath -lstdc++ -ldl -o ex3k
> nvcc_wrapper - *warning* you have set multiple optimization flags (-O*),
> only the last is used because nvcc can only accept a single optimization
> setting.
>
> *g++: error: unrecognized command line option '-rpath'*gmake[4]: ***
> [/global/homes/m/madams/petsc/lib/petsc/conf/test:32: ex3k] Error 1
> gmake[3]: [makefile:115: runex3k_kokkos] Error 2 (ignored)
> 1,25c1,4
> < atol=1e-50, rtol=1e-08, stol=1e-08, maxit=50, maxf=10000
> < Vec Object: Exact Solution 2 MPI processes
> <   type: mpikokkos
>
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