[petsc-dev] kokkos error

Sun Nov 21 12:04:23 CST 2021

Any idea what is going wrong with this?

Using PETSC_DIR=/global/homes/m/madams/petsc and
PETSC_ARCH=arch-perlmutter-opt-gcc-kokkos-cuda
C/C++ example src/snes/tutorials/ex19 run successfully with 1 MPI process
C/C++ example src/snes/tutorials/ex19 run successfully with 2 MPI processes
C/C++ example src/snes/tutorials/ex19 run successfully with cuda
gmake[3]: [/global/homes/m/madams/petsc/lib/petsc/conf/rules:301:
ex3k.PETSc] Error 2 (ignored)
*******************Error detected during compile or link!*******************
See http://www.mcs.anl.gov/petsc/documentation/faq.html
/global/homes/m/madams/petsc/src/snes/tutorials ex3k
*********************************************************************************
PATH=/global/homes/m/madams/petsc/arch-perlmutter-opt-gcc-kokkos-cuda/lib:/global/common/software/nersc/shasta2105/arm-forge/21.0.2-linux-x86_64/bin:/global/common/software/nersc/cos1.3/cuda/11.3.0/bin:/opt/cray/pe/perftools/21.10.0/bin:/opt/cray/pe/papi/
6.0.0.10/bin:/opt/cray/pe/gcc/9.3.0/bin:/opt/cray/pe/craype/2.7.11/bin:/global/common/software/nersc/shasta2105/python/3.8-anaconda-2021.05/bin:/global/homes/m/madams/.local/perlmutter/3.8-anaconda-2021.05/bin:/global/common/software/nersc/shasta2105/cmake/git-master/bin:/global/common/software/nersc/bin:/opt/cray/libfabric/1.11.0.4.79/bin:/usr/local/bin:/usr/bin:/bin:/usr/lib/mit/bin:/opt/cray/pe/bin:`dirname
/global/common/software/nersc/cos1.3/cuda/11.3.0/bin/nvcc`
NVCC_WRAPPER_DEFAULT_COMPILER=CC
/global/homes/m/madams/petsc/arch-perlmutter-opt-gcc-kokkos-cuda/bin/nvcc_wrapper
--expt-extended-lambda -g -Xcompiler -rdynamic -DLANDAU_DIM=2
-DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -Xcompiler -fPIC -ccbin CC
-std=c++17 -gencode arch=compute_80,code=sm_80  -Wno-deprecated-gpu-targets
-I/opt/cray/pe/mpich/8.1.10/ofi/gnu/9.1/include -I/opt/cray/pe/libsci/
21.08.1.2/GNU/9.1/x86_64/include -I/opt/cray/pe/pmi/6.0.14/include
-I/opt/cray/pe/dsmml/0.2.2/dsmml//include
-I/opt/cray/xpmem/2.2.40-7.0.1.0_3.1__g1d7a24d.shasta/include
 -I/global/homes/m/madams/petsc/include
-I/global/homes/m/madams/petsc/arch-perlmutter-opt-gcc-kokkos-cuda/include
-I/global/common/software/nersc/cos1.3/cuda/11.3.0/include    -g
-DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -fPIC -O3 -g
-DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -O3
-L/opt/cray/pe/mpich/8.1.10/ofi/gnu/9.1/lib
-L/opt/cray/pe/mpich/8.1.10/gtl/lib -L/opt/cray/pe/libsci/
21.08.1.2/GNU/9.1/x86_64/lib -L/opt/cray/pe/pmi/6.0.14/lib
-L/opt/cray/pe/dsmml/0.2.2/dsmml//lib
-L/opt/cray/xpmem/2.2.40-7.0.1.0_3.1__g1d7a24d.shasta/lib64
-Wl,--as-needed,-lmpi_gnu_91,--no-as-needed
-Wl,--as-needed,-lsci_gnu_82_mpi,--no-as-needed
-Wl,--as-needed,-lsci_gnu_82,--no-as-needed
-Wl,--as-needed,-ldsmml,--no-as-needed  -lpmi -lpmi2 -lmpi_gtl_cuda -ldl
-lxpmem   ex3k.kokkos.cxx
 -Wl,-rpath,/global/homes/m/madams/petsc/arch-perlmutter-opt-gcc-kokkos-cuda/lib
-L/global/homes/m/madams/petsc/arch-perlmutter-opt-gcc-kokkos-cuda/lib
-Wl,-rpath,/global/homes/m/madams/petsc/arch-perlmutter-opt-gcc-kokkos-cuda/lib
-L/global/homes/m/madams/petsc/arch-perlmutter-opt-gcc-kokkos-cuda/lib
-Wl,-rpath,/global/common/software/nersc/cos1.3/cuda/11.3.0/lib64
-L/global/common/software/nersc/cos1.3/cuda/11.3.0/lib64
-L/global/common/software/nersc/cos1.3/cuda/11.3.0/lib64/stubs
-Wl,-rpath,/opt/cray/pe/mpich/8.1.10/ofi/gnu/9.1/lib
-L/opt/cray/pe/mpich/8.1.10/ofi/gnu/9.1/lib
-Wl,-rpath,/opt/cray/pe/mpich/8.1.10/gtl/lib
-L/opt/cray/pe/mpich/8.1.10/gtl/lib -Wl,-rpath,/opt/cray/pe/libsci/
21.08.1.2/GNU/9.1/x86_64/lib -L/opt/cray/pe/libsci/
21.08.1.2/GNU/9.1/x86_64/lib -Wl,-rpath,/opt/cray/pe/pmi/6.0.14/lib
-L/opt/cray/pe/pmi/6.0.14/lib -Wl,-rpath,/opt/cray/pe/dsmml/0.2.2/dsmml/lib
-L/opt/cray/pe/dsmml/0.2.2/dsmml/lib
-Wl,-rpath,/opt/cray/xpmem/2.2.40-7.0.1.0_3.1__g1d7a24d.shasta/lib64
-L/opt/cray/xpmem/2.2.40-7.0.1.0_3.1__g1d7a24d.shasta/lib64
-Wl,-rpath,/opt/cray/pe/gcc/9.3.0/snos/lib/gcc/x86_64-suse-linux/9.3.0
-L/opt/cray/pe/gcc/9.3.0/snos/lib/gcc/x86_64-suse-linux/9.3.0
-Wl,-rpath,/opt/cray/pe/gcc/9.3.0/snos/lib64
-L/opt/cray/pe/gcc/9.3.0/snos/lib64
-Wl,-rpath,/opt/cray/pe/gcc/9.3.0/snos/lib
-L/opt/cray/pe/gcc/9.3.0/snos/lib -lpetsc -lkokkoskernels
-lkokkoscontainers -lkokkoscore -lp4est -lsc -lparmetis -lmetis -lz
-lcudart -lcufft -lcublas -lcusparse -lcusolver -lcurand -lcuda -lX11
-lstdc++ -ldl -lpmi -lpmi2 -lmpi_gtl_cuda -lxpmem -lgfortran -lm
-lmpifort_gnu_91 -lmpi_gnu_91 -lsci_gnu_82_mpi -lsci_gnu_82 -ldsmml
-lgfortran -lquadmath -lpthread -lm -lgcc_s -lquadmath -lstdc++ -ldl -o ex3k
nvcc_wrapper - *warning* you have set multiple optimization flags (-O*),
only the last is used because nvcc can only accept a single optimization
setting.

*g++: error: unrecognized command line option '-rpath'*gmake[4]: ***
[/global/homes/m/madams/petsc/lib/petsc/conf/test:32: ex3k] Error 1
gmake[3]: [makefile:115: runex3k_kokkos] Error 2 (ignored)
1,25c1,4
< atol=1e-50, rtol=1e-08, stol=1e-08, maxit=50, maxf=10000
< Vec Object: Exact Solution 2 MPI processes
<   type: mpikokkos
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