[petsc-dev] Kokkos make error on Spock

Mark Adams mfadams at lbl.gov
Tue Jul 20 08:00:33 CDT 2021 

On Mon, Jul 19, 2021 at 6:41 PM Scott Kruger <kruger at txcorp.com> wrote:

>
> Mark,
>
> On tulip, things with fortran went wonky when a `-fast` flag snuck into
> the flags (snuck in being me copying a previous configure file and not
> questioning the flags).  The reason is that for clang, `-fast` implies
> link time optimization (lto) for C/C++ code, but flang doesn't support
> lto so things got weird.  I suspect that gfortran does not either (but
> perhaps the real question is why not use flang?)
>

It does work with GNU. I am doing this for an application and I want to
avoid dictating the program env.

I'm (re)trying with -O0 just to check.


>
> I look at configure and I don't see anything in your flags that would
> trigger lto, but as Junchao says, it might be picking something up from
> Kokkos, so perhaps this is the issue.
>
>
The configure files that I sent did not have Kokkos. They were stripped
down.

I have asked ORNL, but don't expect help.
The person (Matt) that is helping me for other things is very helpful so
perhaps he can come up with some ideas.
Otherwise I will tell the app that they need to use GNU for now.

Thanks,
Mark



> Scott
>
>
> On 2021-07-19 07:19, Mark Adams did write:
> > Thanks, but this happens w/o Kokkos.
> > I've stripped this down and attached good/bad logs without/with Fortran
> > bindings.
> > Hope this helps,
> > Thanks again,
> > Mark
> >
> > On Sun, Jul 18, 2021 at 12:00 PM Stefano Zampini <
> stefano.zampini at gmail.com>
> > wrote:
> >
> > > This is probably kokkos pulling in the dependencies where compiling
> kokkos
> > > source within PETSc.
> > >
> > > Il Dom 18 Lug 2021, 16:29 Mark Adams <mfadams at lbl.gov> ha scritto:
> > >
> > >> Whoops, this error was just from not telling gfortran to allow long
> lines.
> > >>
> > >> Anway, I did find that the when fortran bindings are enabled this OMP
> > >> thing gets into the library. No idea how. I'll askm ORNL.
> > >>
> > >> 10:26 jczhang/fix-cray-mpicxx-includes/main=
> > >> /gpfs/alpine/csc314/scratch/adams/petsc2$ nm
> > >>
> /gpfs/alpine/csc314/scratch/adams/petsc2/arch-spock-opt-cray-kokkos/lib/libpetsc.so
> > >> |g offload
> > >>                  U .omp_offloading.img_cache.cray_amdgcn-amd-amdhsa
> > >>                  U .omp_offloading.img_size.cray_amdgcn-amd-amdhsa
> > >>                  U .omp_offloading.img_start.cray_amdgcn-amd-amdhsa
> > >> 0000000001d457b0 T vecgetoffloadmask_
> > >>
> > >>
> > >> On Sun, Jul 18, 2021 at 8:43 AM Mark Adams <mfadams at lbl.gov> wrote:
> > >>
> > >>> Ah, your test was not on Spock ... I have something working but this
> is
> > >>> strange.
> > >>>
> > >>> I switched to the GNU ProgEnv. and it passed the Fortran test in
> > >>> 'check', but this failed:
> > >>>
> > >>>
> > >>>
> > >>>
> > >>>
> > >>>
> > >>>
> > >>>
> > >>>
> > >>> *08:26 2 jczhang/fix-cray-mpicxx-includes/main=
> > >>> /gpfs/alpine/csc314/scratch/adams/petsc/src/snes/tutorials$ make
> > >>>
> PETSC_DIR=/gpfs/alpine/phy122/proj-shared/spock/petsc/current/arch-dbg-gnu
> > >>> PETSC_ARCH="" ex40f90ftn -L/sw/spock/spack-envs/views/rocm-4.1.0/lib
> > >>> -lamdhip64 -lhsa-runtime64  -fPIC -g -O0   -fPIC -g -O0
> > >>>
> -I/gpfs/alpine/phy122/proj-shared/spock/petsc/current/arch-dbg-gnu/include
> > >>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include     ex40f90.F90
> > >>>
> -Wl,-rpath,/gpfs/alpine/phy122/proj-shared/spock/petsc/current/arch-dbg-gnu/lib
> > >>>
> -L/gpfs/alpine/phy122/proj-shared/spock/petsc/current/arch-dbg-gnu/lib
> > >>> -Wl,-rpath,/sw/spock/spack-envs/views/rocm-4.1.0/lib
> > >>> -L/sw/spock/spack-envs/views/rocm-4.1.0/lib
> > >>> -Wl,-rpath,/opt/cray/pe/mpich/8.1.4/ofi/gnu/9.1/lib
> > >>> -L/opt/cray/pe/mpich/8.1.4/ofi/gnu/9.1/lib
> > >>> -Wl,-rpath,/opt/cray/pe/mpich/8.1.4/gtl/lib
> > >>> -L/opt/cray/pe/mpich/8.1.4/gtl/lib
> > >>> -Wl,-rpath,/opt/cray/pe/libsci/21.04.1.1/GNU/9.1/x86_64/lib
> > >>> <http://21.04.1.1/GNU/9.1/x86_64/lib>
> > >>> -L/opt/cray/pe/libsci/21.04.1.1/GNU/9.1/x86_64/lib
> > >>> <http://21.04.1.1/GNU/9.1/x86_64/lib>
> > >>> -Wl,-rpath,/opt/cray/pe/pmi/6.0.10/lib -L/opt/cray/pe/pmi/6.0.10/lib
> > >>> -Wl,-rpath,/opt/cray/pe/dsmml/0.1.4/dsmml/lib
> > >>> -L/opt/cray/pe/dsmml/0.1.4/dsmml/lib
> > >>> -Wl,-rpath,/opt/cray/xpmem/2.2.40-2.1_2.7__g3cf3325.shasta/lib64
> > >>> -L/opt/cray/xpmem/2.2.40-2.1_2.7__g3cf3325.shasta/lib64
> > >>> -Wl,-rpath,/opt/gcc/10.2.0/snos/lib/gcc/x86_64-suse-linux/10.2.0
> > >>> -L/opt/gcc/10.2.0/snos/lib/gcc/x86_64-suse-linux/10.2.0
> > >>> -Wl,-rpath,/opt/gcc/10.2.0/snos/lib64 -L/opt/gcc/10.2.0/snos/lib64
> > >>> -Wl,-rpath,/sw/spock/spack-envs/views/rocm-4.1.0/llvm/lib
> > >>> -L/sw/spock/spack-envs/views/rocm-4.1.0/llvm/lib
> > >>> -Wl,-rpath,/opt/gcc/10.2.0/snos/lib -L/opt/gcc/10.2.0/snos/lib
> -lpetsc
> > >>> -lhipsparse -lhipblas -lrocsparse -lrocsolver -lrocblas -lamdhip64
> > >>> -lhsa-runtime64 -lstdc++ -ldl -lpmi -lmpi_gtl_hsa -lxpmem -lgfortran
> -lm
> > >>> -lsci_gnu_82_mpi -lsci_gnu_82 -lmpifort_gnu_91 -lmpi_gnu_91 -ldsmml
> > >>> -lgfortran -lquadmath -lpthread -lm -lgcc_s -lquadmath -lstdc++ -ldl
> -o
> > >>> ex40f90ex40f90.F90:35:132:   35 |       call
> > >>>
> DMDACreate2d(PETSC_COMM_WORLD,DM_BOUNDARY_NONE,DM_BOUNDARY_NONE,DMDA_STENCIL_BOX,ten,ten,PETSC_DECIDE,PETSC_DECIDE,two,one,
> > >>> &      |
> > >>>
> 1Error:
> > >>> Line truncated at (1) [-Werror=line-truncation]ex40f90.F90:35:132:*
> > >>> * ....*
> > >>>
> > >>> But ex5f (the Fortran check test) does work manually also (sanity
> check).
> > >>>
> > >>> Oddly I seem to have the cray compilers:
> > >>>
> > >>> 08:34 jczhang/fix-cray-mpicxx-includes/main=
> > >>> /gpfs/alpine/csc314/scratch/adams/petsc/src/snes/tutorials$ which ftn
> > >>> /opt/cray/pe/craype/2.7.6/bin/ftn
> > >>>
> > >>> yet it is GNU:
> > >>>
> > >>> 08:34 jczhang/fix-cray-mpicxx-includes/main=
> > >>> /gpfs/alpine/csc314/scratch/adams/petsc/src/snes/tutorials$ ftn
> --version
> > >>> GNU Fortran (GCC) 10.2.0 20200723 (Cray Inc.)
> > >>> Copyright (C) 2020 Free Software Foundation, Inc.
> > >>> This is free software; see the source for copying conditions.  There
> is
> > >>> NO
> > >>> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR
> > >>> PURPOSE.
> > >>>
> > >>> The documentation says ftn should be here:
> > >>>
> > >>> 08:34 jczhang/fix-cray-mpicxx-includes/main=
> > >>> /gpfs/alpine/csc314/scratch/adams/petsc/src/snes/tutorials$
> > >>> $GCC_PATH/bin/gfortran --version
> > >>> GNU Fortran (GCC) 10.2.0 20200723 (Cray Inc.)
> > >>> Copyright (C) 2020 Free Software Foundation, Inc.
> > >>> This is free software; see the source for copying conditions.  There
> is
> > >>> NO
> > >>> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR
> > >>> PURPOSE.
> > >>>
> > >>> Same, but the path is not the same:
> > >>>
> > >>> 08:39 jczhang/fix-cray-mpicxx-includes/main=
> > >>> /gpfs/alpine/csc314/scratch/adams/petsc/src/snes/tutorials$ echo
> $GCC_PATH
> > >>> /opt/gcc/10.2.0
> > >>>
> > >>> Anyway, thanks for your help,
> > >>> Mark
> > >>>
> > >>> On Sat, Jul 17, 2021 at 11:26 PM Junchao Zhang <
> junchao.zhang at gmail.com>
> > >>> wrote:
> > >>>
> > >>>> Mark,  I can reproduce this error with PrgEnv-cray, i.e., using the
> > >>>> Cray compiler (clang-11).  Previously I used PrgEnv-gnu, which did
> not have
> > >>>> this error.
> > >>>> Probably it is a problem of Spock.  But I am not sure.
> > >>>>
> > >>>> --Junchao Zhang
> > >>>>
> > >>>>
> > >>>> On Sat, Jul 17, 2021 at 10:17 AM Mark Adams <mfadams at lbl.gov>
> wrote:
> > >>>>
> > >>>>> And I can run a fortran test, with warnings, but C tests fail:
> > >>>>>
> > >>>>> 11:15 jczhang/fix-cray-mpicxx-includes/main=
> > >>>>> /gpfs/alpine/csc314/scratch/adams/petsc$ make
> > >>>>> PETSC_DIR=/gpfs/alpine/csc314/scratch/adams/petsc
> > >>>>> PETSC_ARCH=arch-spock-opt-cray-kokkos -f gmakefile test
> > >>>>> search='ts_utils_dmplexlandau_tutorials-ex1f90_0'
> > >>>>> Using MAKEFLAGS: -- search=ts_utils_dmplexlandau_tutorials-ex1f90_0
> > >>>>> PETSC_ARCH=arch-spock-opt-cray-kokkos
> > >>>>> PETSC_DIR=/gpfs/alpine/csc314/scratch/adams/petsc
> > >>>>>           FC
> > >>>>>
> arch-spock-opt-cray-kokkos/tests/ts/utils/dmplexlandau/tutorials/ex1f90.o
> > >>>>>      FLINKER
> > >>>>>
> arch-spock-opt-cray-kokkos/tests/ts/utils/dmplexlandau/tutorials/ex1f90
> > >>>>> /opt/cray/pe/cce/11.0.4/binutils/x86_64/x86_64-pc-linux-gnu/bin/ld:
> > >>>>> warning: alignment 128 of symbol
> > >>>>> `$host_init$$runtime_init_for_iso_c_binding$iso_c_binding_' in
> > >>>>> /opt/cray/pe/cce/11.0.4/cce/x86_64/lib/libmodules.so is smaller
> than 256 in
> > >>>>>
> arch-spock-opt-cray-kokkos/tests/ts/utils/dmplexlandau/tutorials/ex1f90.o
> > >>>>> /opt/cray/pe/cce/11.0.4/binutils/x86_64/x86_64-pc-linux-gnu/bin/ld:
> > >>>>> warning: alignment 64 of symbol `$data_init$iso_c_binding_' in
> > >>>>> /opt/cray/pe/cce/11.0.4/cce/x86_64/lib/libmodules.so is smaller
> than 256 in
> > >>>>>
> arch-spock-opt-cray-kokkos/tests/ts/utils/dmplexlandau/tutorials/ex1f90.o
> > >>>>>         TEST
> > >>>>>
> arch-spock-opt-cray-kokkos/tests/counts/ts_utils_dmplexlandau_tutorials-ex1f90_0.counts
> > >>>>>  ok ts_utils_dmplexlandau_tutorials-ex1f90_0
> > >>>>>  ok diff-ts_utils_dmplexlandau_tutorials-ex1f90_0
> > >>>>>
> > >>>>>
> > >>>>> On Sat, Jul 17, 2021 at 10:53 AM Mark Adams <mfadams at lbl.gov>
> wrote:
> > >>>>>
> > >>>>>> HUmm, I can not reproduce this.
> > >>>>>>
> > >>>>>> 10:49 jczhang/fix-cray-mpicxx-includes/main=
> > >>>>>> /gpfs/alpine/csc314/scratch/adams/petsc$ make
> > >>>>>> PETSC_DIR=/gpfs/alpine/csc314/scratch/adams/petsc
> > >>>>>> PETSC_ARCH=arch-spock-dbg-kokkos check
> > >>>>>> Running check examples to verify correct installation
> > >>>>>> Using PETSC_DIR=/gpfs/alpine/csc314/scratch/adams/petsc and
> > >>>>>> PETSC_ARCH=arch-spock-dbg-kokkos
> > >>>>>> gmake[3]:
> > >>>>>> [/gpfs/alpine/csc314/scratch/adams/petsc/lib/petsc/conf/rules:301:
> > >>>>>> ex19.PETSc] Error 2 (ignored)
> > >>>>>> *******************Error detected during compile or
> > >>>>>> link!*******************
> > >>>>>> See http://www.mcs.anl.gov/petsc/documentation/faq.html
> > >>>>>> /gpfs/alpine/csc314/scratch/adams/petsc/src/snes/tutorials ex19
> > >>>>>>
> > >>>>>>
> *********************************************************************************
> > >>>>>> cc -L/sw/spock/spack-envs/views/rocm-4.1.0/lib -lamdhip64
> > >>>>>> -lhsa-runtime64  -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing
> > >>>>>> -Wno-unknown-pragmas -fstack-protector -Qunused-arguments
> > >>>>>> -fvisibility=hidden -g -O0  -fPIC -Wall -Wwrite-strings
> > >>>>>> -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector
> > >>>>>> -Qunused-arguments -fvisibility=hidden -g -O0
> > >>>>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include
> > >>>>>> -I/gpfs/alpine/csc314/scratch/adams/petsc/include
> > >>>>>>
> -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/include
> > >>>>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include
> > >>>>>>  -I/sw/spock/spack-envs/views/rocm-4.1.0/include    ex19.c
> > >>>>>>
> -Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib
> > >>>>>>
> -L/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib
> > >>>>>>
> -Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib
> > >>>>>>
> -L/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib
> > >>>>>> -Wl,-rpath,/sw/spock/spack-envs/views/rocm-4.1.0/lib
> > >>>>>> -L/sw/spock/spack-envs/views/rocm-4.1.0/lib
> > >>>>>> -Wl,-rpath,/opt/gcc/8.1.0/snos/lib64 -L/opt/gcc/8.1.0/snos/lib64
> > >>>>>> -Wl,-rpath,/opt/cray/pe/libsci/21.04.1.1/CRAY/9.0/x86_64/lib
> > >>>>>> -L/opt/cray/pe/libsci/21.04.1.1/CRAY/9.0/x86_64/lib
> > >>>>>> -Wl,-rpath,/opt/cray/pe/mpich/8.1.4/ofi/cray/9.1/lib
> > >>>>>> -L/opt/cray/pe/mpich/8.1.4/ofi/cray/9.1/lib
> > >>>>>> -Wl,-rpath,/opt/cray/pe/mpich/8.1.4/gtl/lib
> > >>>>>> -L/opt/cray/pe/mpich/8.1.4/gtl/lib
> -Wl,-rpath,/opt/cray/pe/pmi/6.0.10/lib
> > >>>>>> -L/opt/cray/pe/pmi/6.0.10/lib
> -Wl,-rpath,/opt/cray/pe/dsmml/0.1.4/dsmml/lib
> > >>>>>> -L/opt/cray/pe/dsmml/0.1.4/dsmml/lib
> > >>>>>> -Wl,-rpath,/opt/cray/pe/cce/11.0.4/cce/x86_64/lib
> > >>>>>> -L/opt/cray/pe/cce/11.0.4/cce/x86_64/lib
> > >>>>>> -Wl,-rpath,/opt/cray/xpmem/2.2.40-2.1_2.7__g3cf3325.shasta/lib64
> > >>>>>> -L/opt/cray/xpmem/2.2.40-2.1_2.7__g3cf3325.shasta/lib64
> > >>>>>>
> -Wl,-rpath,/opt/cray/pe/cce/11.0.4/cce-clang/x86_64/lib/clang/11.0.0/lib/linux
> > >>>>>>
> -L/opt/cray/pe/cce/11.0.4/cce-clang/x86_64/lib/clang/11.0.0/lib/linux
> > >>>>>> -Wl,-rpath,/opt/gcc/8.1.0/snos/lib/gcc/x86_64-suse-linux/8.1.0
> > >>>>>> -L/opt/gcc/8.1.0/snos/lib/gcc/x86_64-suse-linux/8.1.0
> > >>>>>>
> -Wl,-rpath,/opt/cray/pe/cce/11.0.4/binutils/x86_64/x86_64-pc-linux-gnu/..//x86_64-unknown-linux-gnu/lib
> > >>>>>>
> -L/opt/cray/pe/cce/11.0.4/binutils/x86_64/x86_64-pc-linux-gnu/..//x86_64-unknown-linux-gnu/lib
> > >>>>>> -lpetsc -lkokkoskernels -lkokkoscontainers -lkokkoscore
> -lhipsparse
> > >>>>>> -lhipblas -lrocsparse -lrocsolver -lrocblas -lamdhip64
> -lhsa-runtime64
> > >>>>>> -lstdc++ -ldl -lpmi -lsci_cray_mpi -lsci_cray -lmpifort_cray
> -lmpi_cray
> > >>>>>> -lmpi_gtl_hsa -lxpmem -ldsmml -lpgas-shmem -lquadmath
> -lcrayacc_amdgpu
> > >>>>>> -lopenacc -lmodules -lfi -lcraymath -lf -lu -lcsup -lgfortran
> -lpthread
> > >>>>>> -lgcc_eh -lm -lclang_rt.craypgo-x86_64 -lclang_rt.builtins-x86_64
> > >>>>>> -lquadmath -lstdc++ -ldl -o ex19
> > >>>>>> ld.lld: error:
> > >>>>>>
> /gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib/libpetsc.so:
> > >>>>>> undefined reference to
> .omp_offloading.img_start.cray_amdgcn-amd-amdhsa
> > >>>>>> [--no-allow-shlib-undefined]
> > >>>>>> ld.lld: error:
> > >>>>>>
> /gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib/libpetsc.so:
> > >>>>>> undefined reference to
> .omp_offloading.img_size.cray_amdgcn-amd-amdhsa
> > >>>>>> [--no-allow-shlib-undefined]
> > >>>>>> ld.lld: error:
> > >>>>>>
> /gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib/libpetsc.so:
> > >>>>>> undefined reference to
> .omp_offloading.img_cache.cray_amdgcn-amd-amdhsa
> > >>>>>> [--no-allow-shlib-undefined]
> > >>>>>> clang-11: error: linker command failed with exit code 1 (use -v to
> > >>>>>> see invocation)
> > >>>>>> gmake[4]: *** [<builtin>: ex19] Error 1
> > >>>>>> gmake[3]:
> > >>>>>> [/gpfs/alpine/csc314/scratch/adams/petsc/lib/petsc/conf/rules:301:
> > >>>>>> ex3k.PETSc] Error 2 (ignored)
> > >>>>>> *******************Error detected during compile or
> > >>>>>> link!*******************
> > >>>>>> See http://www.mcs.anl.gov/petsc/documentation/faq.html
> > >>>>>> /gpfs/alpine/csc314/scratch/adams/petsc/src/snes/tutorials ex3k
> > >>>>>>
> > >>>>>>
> *********************************************************************************
> > >>>>>> hipcc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing
> > >>>>>> -Wno-unknown-pragmas -fvisibility=hidden -g -O0 -std=c++14
> > >>>>>>  -I/gpfs/alpine/csc314/scratch/adams/petsc/include
> > >>>>>>
> -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/include
> > >>>>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include
> > >>>>>>  -I/sw/spock/spack-envs/views/rocm-4.1.0/include
> -I/opt/cray/pe/libsci/
> > >>>>>> 21.04.1.1/CRAY/9.0/x86_64/include
> > >>>>>> -I/opt/cray/pe/mpich/8.1.4/ofi/cray/9.1/include
> > >>>>>> -I/opt/cray/pe/pmi/6.0.10/include
> -I/opt/cray/pe/dsmml/0.1.4/dsmml//include
> > >>>>>> -I/opt/cray/xpmem/2.2.40-2.1_2.7__g3cf3325.shasta/include
> > >>>>>>  -L/opt/cray/pe/libsci/21.04.1.1/CRAY/9.0/x86_64/lib
> > >>>>>> -L/opt/cray/pe/mpich/8.1.4/ofi/cray/9.1/lib
> > >>>>>> -L/opt/cray/pe/mpich/8.1.4/gtl/lib -L/opt/cray/pe/pmi/6.0.10/lib
> > >>>>>> -L/opt/cray/pe/dsmml/0.1.4/dsmml//lib
> > >>>>>> -L/opt/cray/pe/cce/11.0.4/cce/x86_64/lib/pkgconfig/../
> > >>>>>> -L/opt/cray/xpmem/2.2.40-2.1_2.7__g3cf3325.shasta/lib64
> > >>>>>> -Wl,--as-needed,-lsci_cray_mpi,--no-as-needed
> > >>>>>> -Wl,--as-needed,-lsci_cray,--no-as-needed
> > >>>>>> -Wl,--as-needed,-lmpi_cray,--no-as-needed
> > >>>>>> -Wl,--as-needed,-ldsmml,--no-as-needed
> > >>>>>> -Wl,--as-needed,-lpgas-shmem,--no-as-needed  -lpmi -ldl
> -lmpi_gtl_hsa
> > >>>>>> -lxpmem -lquadmath -lmodules -lfi -lcraymath -lf -lu -lcsup
> > >>>>>>  ex3k.kokkos.cxx
> > >>>>>>
> -Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib
> > >>>>>>
> -L/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib
> > >>>>>>
> -Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib
> > >>>>>>
> -L/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib
> > >>>>>> -Wl,-rpath,/sw/spock/spack-envs/views/rocm-4.1.0/lib
> > >>>>>> -L/sw/spock/spack-envs/views/rocm-4.1.0/lib
> > >>>>>> -Wl,-rpath,/opt/gcc/8.1.0/snos/lib64 -L/opt/gcc/8.1.0/snos/lib64
> > >>>>>> -Wl,-rpath,/opt/cray/pe/libsci/21.04.1.1/CRAY/9.0/x86_64/lib
> > >>>>>> -L/opt/cray/pe/libsci/21.04.1.1/CRAY/9.0/x86_64/lib
> > >>>>>> -Wl,-rpath,/opt/cray/pe/mpich/8.1.4/ofi/cray/9.1/lib
> > >>>>>> -L/opt/cray/pe/mpich/8.1.4/ofi/cray/9.1/lib
> > >>>>>> -Wl,-rpath,/opt/cray/pe/mpich/8.1.4/gtl/lib
> > >>>>>> -L/opt/cray/pe/mpich/8.1.4/gtl/lib
> -Wl,-rpath,/opt/cray/pe/pmi/6.0.10/lib
> > >>>>>> -L/opt/cray/pe/pmi/6.0.10/lib
> -Wl,-rpath,/opt/cray/pe/dsmml/0.1.4/dsmml/lib
> > >>>>>> -L/opt/cray/pe/dsmml/0.1.4/dsmml/lib
> > >>>>>> -Wl,-rpath,/opt/cray/pe/cce/11.0.4/cce/x86_64/lib
> > >>>>>> -L/opt/cray/pe/cce/11.0.4/cce/x86_64/lib
> > >>>>>> -Wl,-rpath,/opt/cray/xpmem/2.2.40-2.1_2.7__g3cf3325.shasta/lib64
> > >>>>>> -L/opt/cray/xpmem/2.2.40-2.1_2.7__g3cf3325.shasta/lib64
> > >>>>>>
> -Wl,-rpath,/opt/cray/pe/cce/11.0.4/cce-clang/x86_64/lib/clang/11.0.0/lib/linux
> > >>>>>>
> -L/opt/cray/pe/cce/11.0.4/cce-clang/x86_64/lib/clang/11.0.0/lib/linux
> > >>>>>> -Wl,-rpath,/opt/gcc/8.1.0/snos/lib/gcc/x86_64-suse-linux/8.1.0
> > >>>>>> -L/opt/gcc/8.1.0/snos/lib/gcc/x86_64-suse-linux/8.1.0
> > >>>>>>
> -Wl,-rpath,/opt/cray/pe/cce/11.0.4/binutils/x86_64/x86_64-pc-linux-gnu/..//x86_64-unknown-linux-gnu/lib
> > >>>>>>
> -L/opt/cray/pe/cce/11.0.4/binutils/x86_64/x86_64-pc-linux-gnu/..//x86_64-unknown-linux-gnu/lib
> > >>>>>> -lpetsc -lkokkoskernels -lkokkoscontainers -lkokkoscore
> -lhipsparse
> > >>>>>> -lhipblas -lrocsparse -lrocsolver -lrocblas -lamdhip64
> -lhsa-runtime64
> > >>>>>> -lstdc++ -ldl -lpmi -lsci_cray_mpi -lsci_cray -lmpifort_cray
> -lmpi_cray
> > >>>>>> -lmpi_gtl_hsa -lxpmem -ldsmml -lpgas-shmem -lquadmath
> -lcrayacc_amdgpu
> > >>>>>> -lopenacc -lmodules -lfi -lcraymath -lf -lu -lcsup -lgfortran
> -lpthread
> > >>>>>> -lgcc_eh -lm -lclang_rt.craypgo-x86_64 -lclang_rt.builtins-x86_64
> > >>>>>> -lquadmath -lstdc++ -ldl -o ex3k
> > >>>>>>
> /usr/lib64/gcc/x86_64-suse-linux/7/../../../../x86_64-suse-linux/bin/ld:
> > >>>>>>
> /gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib/libpetsc.so:
> > >>>>>> undefined reference to
> `.omp_offloading.img_size.cray_amdgcn-amd-amdhsa'
> > >>>>>>
> /usr/lib64/gcc/x86_64-suse-linux/7/../../../../x86_64-suse-linux/bin/ld:
> > >>>>>>
> /gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib/libpetsc.so:
> > >>>>>> undefined reference to
> `.omp_offloading.img_start.cray_amdgcn-amd-amdhsa'
> > >>>>>>
> /usr/lib64/gcc/x86_64-suse-linux/7/../../../../x86_64-suse-linux/bin/ld:
> > >>>>>>
> /gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib/libpetsc.so:
> > >>>>>> undefined reference to
> `.omp_offloading.img_cache.cray_amdgcn-amd-amdhsa'
> > >>>>>> clang-12: error: linker command failed with exit code 1 (use -v to
> > >>>>>> see invocation)
> > >>>>>> gmake[4]: ***
> > >>>>>> [/gpfs/alpine/csc314/scratch/adams/petsc/lib/petsc/conf/test:26:
> ex3k]
> > >>>>>> Error 1
> > >>>>>> gmake[3]: [makefile:102: runex3k_kokkos] Error 2 (ignored)
> > >>>>>> 1,25c1,4
> > >>>>>> < atol=1e-50, rtol=1e-08, stol=1e-08, maxit=50, maxf=10000
> > >>>>>> < Vec Object: Exact Solution 2 MPI processes
> > >>>>>> <   type: mpikokkos
> > >>>>>> < Process [0]
> > >>>>>> < 0.
> > >>>>>> < 0.015625
> > >>>>>> < 0.125
> > >>>>>> < Process [1]
> > >>>>>> < 0.421875
> > >>>>>> < 1.
> > >>>>>> < Vec Object: Forcing function 2 MPI processes
> > >>>>>> <   type: mpikokkos
> > >>>>>> < Process [0]
> > >>>>>> < 1e-72
> > >>>>>> < 1.50024
> > >>>>>> < 3.01563
> > >>>>>> < Process [1]
> > >>>>>> < 4.67798
> > >>>>>> < 7.
> > >>>>>> <   0 SNES Function norm 5.414682427127e+00
> > >>>>>> <   1 SNES Function norm 2.952582418265e-01
> > >>>>>> <   2 SNES Function norm 4.502293658739e-04
> > >>>>>> <   3 SNES Function norm 1.389665806646e-09
> > >>>>>> < Number of SNES iterations = 3
> > >>>>>> < Norm of error 1.49752e-10 Iterations 3
> > >>>>>> ---
> > >>>>>> > slurmstepd: error: execve():
> > >>>>>>
> /gpfs/alpine/csc314/scratch/adams/petsc/src/snes/tutorials/./ex3k: No such
> > >>>>>> file or directory
> > >>>>>> > slurmstepd: error: execve():
> > >>>>>>
> /gpfs/alpine/csc314/scratch/adams/petsc/src/snes/tutorials/./ex3k: No such
> > >>>>>> file or directory
> > >>>>>> > srun: error: spock01: tasks 0-1: Exited with exit code 2
> > >>>>>> > srun: launch/slurm: _step_signal: Terminating StepId=272979.0
> > >>>>>> /gpfs/alpine/csc314/scratch/adams/petsc/src/snes/tutorials
> > >>>>>> Possible problem with ex3k running with kokkos-kernels, diffs
> above
> > >>>>>> =========================================
> > >>>>>> *******************Error detected during compile or
> > >>>>>> link!*******************
> > >>>>>> See http://www.mcs.anl.gov/petsc/documentation/faq.html
> > >>>>>> /gpfs/alpine/csc314/scratch/adams/petsc/src/snes/tutorials ex5f
> > >>>>>> *********************************************************
> > >>>>>> ftn -L/sw/spock/spack-envs/views/rocm-4.1.0/lib -lamdhip64
> > >>>>>> -lhsa-runtime64  -fPIC -g -O0   -fPIC -g -O0
> > >>>>>>  -I/gpfs/alpine/csc314/scratch/adams/petsc/include
> > >>>>>>
> -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/include
> > >>>>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include     ex5f.F90
> > >>>>>>
> -Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib
> > >>>>>>
> -L/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib
> > >>>>>>
> -Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib
> > >>>>>>
> -L/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib
> > >>>>>> -Wl,-rpath,/sw/spock/spack-envs/views/rocm-4.1.0/lib
> > >>>>>> -L/sw/spock/spack-envs/views/rocm-4.1.0/lib
> > >>>>>> -Wl,-rpath,/opt/gcc/8.1.0/snos/lib64 -L/opt/gcc/8.1.0/snos/lib64
> > >>>>>> -Wl,-rpath,/opt/cray/pe/libsci/21.04.1.1/CRAY/9.0/x86_64/lib
> > >>>>>> -L/opt/cray/pe/libsci/21.04.1.1/CRAY/9.0/x86_64/lib
> > >>>>>> -Wl,-rpath,/opt/cray/pe/mpich/8.1.4/ofi/cray/9.1/lib
> > >>>>>> -L/opt/cray/pe/mpich/8.1.4/ofi/cray/9.1/lib
> > >>>>>> -Wl,-rpath,/opt/cray/pe/mpich/8.1.4/gtl/lib
> > >>>>>> -L/opt/cray/pe/mpich/8.1.4/gtl/lib
> -Wl,-rpath,/opt/cray/pe/pmi/6.0.10/lib
> > >>>>>> -L/opt/cray/pe/pmi/6.0.10/lib
> -Wl,-rpath,/opt/cray/pe/dsmml/0.1.4/dsmml/lib
> > >>>>>> -L/opt/cray/pe/dsmml/0.1.4/dsmml/lib
> > >>>>>> -Wl,-rpath,/opt/cray/pe/cce/11.0.4/cce/x86_64/lib
> > >>>>>> -L/opt/cray/pe/cce/11.0.4/cce/x86_64/lib
> > >>>>>> -Wl,-rpath,/opt/cray/xpmem/2.2.40-2.1_2.7__g3cf3325.shasta/lib64
> > >>>>>> -L/opt/cray/xpmem/2.2.40-2.1_2.7__g3cf3325.shasta/lib64
> > >>>>>>
> -Wl,-rpath,/opt/cray/pe/cce/11.0.4/cce-clang/x86_64/lib/clang/11.0.0/lib/linux
> > >>>>>>
> -L/opt/cray/pe/cce/11.0.4/cce-clang/x86_64/lib/clang/11.0.0/lib/linux
> > >>>>>> -Wl,-rpath,/opt/gcc/8.1.0/snos/lib/gcc/x86_64-suse-linux/8.1.0
> > >>>>>> -L/opt/gcc/8.1.0/snos/lib/gcc/x86_64-suse-linux/8.1.0
> > >>>>>>
> -Wl,-rpath,/opt/cray/pe/cce/11.0.4/binutils/x86_64/x86_64-pc-linux-gnu/..//x86_64-unknown-linux-gnu/lib
> > >>>>>>
> -L/opt/cray/pe/cce/11.0.4/binutils/x86_64/x86_64-pc-linux-gnu/..//x86_64-unknown-linux-gnu/lib
> > >>>>>> -lpetsc -lkokkoskernels -lkokkoscontainers -lkokkoscore
> -lhipsparse
> > >>>>>> -lhipblas -lrocsparse -lrocsolver -lrocblas -lamdhip64
> -lhsa-runtime64
> > >>>>>> -lstdc++ -ldl -lpmi -lsci_cray_mpi -lsci_cray -lmpifort_cray
> -lmpi_cray
> > >>>>>> -lmpi_gtl_hsa -lxpmem -ldsmml -lpgas-shmem -lquadmath
> -lcrayacc_amdgpu
> > >>>>>> -lopenacc -lmodules -lfi -lcraymath -lf -lu -lcsup -lgfortran
> -lpthread
> > >>>>>> -lgcc_eh -lm -lclang_rt.craypgo-x86_64 -lclang_rt.builtins-x86_64
> > >>>>>> -lquadmath -lstdc++ -ldl -o ex5f
> > >>>>>>
> /opt/cray/pe/cce/11.0.4/binutils/x86_64/x86_64-pc-linux-gnu/bin/ld:
> > >>>>>> warning: alignment 128 of symbol
> > >>>>>> `$host_init$$runtime_init_for_iso_c_binding$iso_c_binding_' in
> > >>>>>> /opt/cray/pe/cce/11.0.4/cce/x86_64/lib/libmodules.so is smaller
> than 256 in
> > >>>>>> /tmp/pe_30429/ex5f_1.o
> > >>>>>>
> /opt/cray/pe/cce/11.0.4/binutils/x86_64/x86_64-pc-linux-gnu/bin/ld:
> > >>>>>> warning: alignment 64 of symbol `$data_init$iso_c_binding_' in
> > >>>>>> /opt/cray/pe/cce/11.0.4/cce/x86_64/lib/libmodules.so is smaller
> than 256 in
> > >>>>>> /tmp/pe_30429/ex5f_1.o
> > >>>>>> Fortran example src/snes/tutorials/ex5f run successfully with 1
> MPI
> > >>>>>> process
> > >>>>>> Completed test examples
> > >>>>>> 10:49 jczhang/fix-cray-mpicxx-includes/main=
> > >>>>>> /gpfs/alpine/csc314/scratch/adams/petsc$ ll
> > >>>>>>
> > >>>>>> On Fri, Jul 16, 2021 at 11:28 PM Junchao Zhang <
> > >>>>>> junchao.zhang at gmail.com> wrote:
> > >>>>>>
> > >>>>>>> Mark, I configured with Fortran binding enabled with main + MR
> !4175
> > >>>>>>> <https://gitlab.com/petsc/petsc/-/merge_requests/4175>
> > >>>>>>>
> > >>>>>>> '--with-mpiexec=srun',
> > >>>>>>> '--with-shared-libraries=1',
> > >>>>>>> '--with-cc=cc',
> > >>>>>>> '--with-cxx=CC',
> > >>>>>>> '--with-fc=ftn',
> > >>>>>>> '--with-fortran-bindings',
> > >>>>>>> '--with-hip',
> > >>>>>>> '--with-hipc=hipcc',
> > >>>>>>> '--with-debugging',
> > >>>>>>> '--CPPFLAGS=-I${ROCM_PATH}/include',
> > >>>>>>> '--CXXPPFLAGS=-I${ROCM_PATH}/include',
> > >>>>>>> '--CC_LINKER_FLAGS=-L${ROCM_PATH}/lib -lamdhip64
> -lhsa-runtime64',
> > >>>>>>> '--CXX_LINKER_FLAGS=-L${ROCM_PATH}/lib -lamdhip64
> -lhsa-runtime64',
> > >>>>>>> '--FC_LINKER_FLAGS=-L${ROCM_PATH}/lib -lamdhip64
> -lhsa-runtime64',
> > >>>>>>> '--COPTFLAGS=-g -O0',
> > >>>>>>> '--CXXOPTFLAGS=-g -O0',
> > >>>>>>> '--FOPTFLAGS=-g -O0',
> > >>>>>>> '--download-kokkos',
> > >>>>>>> '--download-kokkos-kernels',
> > >>>>>>> '--download-kokkos-commit=3.4.01',
> > >>>>>>> '--download-kokkos-kernels-commit=3.4.01',
> > >>>>>>> '--with-kokkos-hip-arch=VEGA908',
> > >>>>>>>
> > >>>>>>> and 'make check' ran smoothly on a compute node
> > >>>>>>>
> > >>>>>>> $ make check
> > >>>>>>> Running check examples to verify correct installation
> > >>>>>>> Using PETSC_DIR=/ccs/home/jczhang/petsc and
> > >>>>>>> PETSC_ARCH=arch-spock-cray-kokkos-dbg
> > >>>>>>> C/C++ example src/snes/tutorials/ex19 run successfully with 1 MPI
> > >>>>>>> process
> > >>>>>>> C/C++ example src/snes/tutorials/ex19 run successfully with 2 MPI
> > >>>>>>> processes
> > >>>>>>> C/C++ example src/snes/tutorials/ex3k run successfully with
> > >>>>>>> kokkos-kernels
> > >>>>>>> Fortran example src/snes/tutorials/ex5f run successfully with 1
> MPI
> > >>>>>>> process
> > >>>>>>>
> > >>>>>>> Completed test examples
> > >>>>>>>
> > >>>>>>>
> > >>>>>>> --Junchao Zhang
> > >>>>>>>
> > >>>>>>>
> > >>>>>>> On Fri, Jul 16, 2021 at 6:04 PM Mark Adams <mfadams at lbl.gov>
> wrote:
> > >>>>>>>
> > >>>>>>>> And I find that this error, on non-Kokkos C tests, is fixed by
> > >>>>>>>> turning the fortran bindings off:
> > >>>>>>>>
> > >>>>>>>> ld.lld: error:
> > >>>>>>>>
> /gpfs/alpine/phy122/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/lib/libpetsc.so:
> > >>>>>>>> undefined reference to
> .omp_offloading.img_start.cray_amdgcn-amd-amdhsa
> > >>>>>>>> [--no-allow-shlib-undefined]
> > >>>>>>>> ld.lld: error:
> > >>>>>>>>
> /gpfs/alpine/phy122/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/lib/libpetsc.so:
> > >>>>>>>> undefined reference to
> .omp_offloading.img_size.cray_amdgcn-amd-amdhsa
> > >>>>>>>> [--no-allow-shlib-undefined]
> > >>>>>>>> ld.lld: error:
> > >>>>>>>>
> /gpfs/alpine/phy122/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/lib/libpetsc.so:
> > >>>>>>>> undefined reference to
> .omp_offloading.img_cache.cray_amdgcn-amd-amdhsa
> > >>>>>>>> [--no-allow-shlib-undefined]
> > >>>>>>>>
> > >>>>>>>> On Fri, Jul 16, 2021 at 3:53 PM Mark Adams <mfadams at lbl.gov>
> wrote:
> > >>>>>>>>
> > >>>>>>>>> Not complex. THis has some overlap with my problem w/o Kokkos.
> > >>>>>>>>>
> > >>>>>>>>> On Fri, Jul 16, 2021 at 12:54 PM Junchao Zhang <
> > >>>>>>>>> junchao.zhang at gmail.com> wrote:
> > >>>>>>>>>
> > >>>>>>>>>> Do you use complex? post your configure.log.
> > >>>>>>>>>>
> > >>>>>>>>>> --Junchao Zhang
> > >>>>>>>>>>
> > >>>>>>>>>>
> > >>>>>>>>>> On Fri, Jul 16, 2021 at 9:47 AM Mark Adams <mfadams at lbl.gov>
> > >>>>>>>>>> wrote:
> > >>>>>>>>>>
> > >>>>>>>>>>> The simple Kokkos example is failing for me on Spock.
> > >>>>>>>>>>> Any ideas?
> > >>>>>>>>>>> Thanks,
> > >>>>>>>>>>>
> > >>>>>>>>>>> 10:44 main *=
> > >>>>>>>>>>> /gpfs/alpine/csc314/scratch/adams/petsc/src/snes/tutorials$
> make
> > >>>>>>>>>>> PETSC_DIR=/gpfs/alpine/csc314/scratch/adams/petsc
> > >>>>>>>>>>> PETSC_ARCH=arch-spock-opt-cray-kokkos ex3k
> > >>>>>>>>>>> MPICH_CXX="hipcc" OMPI_CXX="hipcc" CC
> > >>>>>>>>>>> -L/sw/spock/spack-envs/views/rocm-4.1.0/lib -lhsa-runtime64
> > >>>>>>>>>>> -L/sw/spock/spack-envs/views/rocm-4.1.0/lib -lamdhip64
> -lhsa-runtime64
> > >>>>>>>>>>>  -Wall -Wwrite-strings -Wno-strict-aliasing
> -Wno-unknown-pragmas
> > >>>>>>>>>>> -fstack-protector -fvisibility=hidden -g -O2   -fPIC -Wall
> -Wwrite-strings
> > >>>>>>>>>>> -Wno-strict-aliasing -Wno-unknown-pragmas
> -fvisibility=hidden -g -O3
> > >>>>>>>>>>> -std=c++14  -I/gpfs/alpine/csc314/scratch/adams/petsc/include
> > >>>>>>>>>>>
> -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-opt-cray-kokkos/include
> > >>>>>>>>>>>
> -I/gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/include
> > >>>>>>>>>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include
> > >>>>>>>>>>>  -I/sw/spock/spack-envs/views/rocm-4.1.0/include
> ex3k.kokkos.cxx
> > >>>>>>>>>>>
> -Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-opt-cray-kokkos/lib
> > >>>>>>>>>>>
> -L/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-opt-cray-kokkos/lib
> > >>>>>>>>>>>
> -Wl,-rpath,/gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/lib
> > >>>>>>>>>>>
> -L/gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/lib
> > >>>>>>>>>>> -Wl,-rpath,/sw/spock/spack-envs/views/rocm-4.1.0/lib
> > >>>>>>>>>>> -L/sw/spock/spack-envs/views/rocm-4.1.0/lib
> > >>>>>>>>>>> -Wl,-rpath,/opt/gcc/8.1.0/snos/lib64
> -L/opt/gcc/8.1.0/snos/lib64
> > >>>>>>>>>>> -Wl,-rpath,/opt/cray/pe/libsci/21.04.1.1/CRAY/9.0/x86_64/lib
> > >>>>>>>>>>> -L/opt/cray/pe/libsci/21.04.1.1/CRAY/9.0/x86_64/lib
> > >>>>>>>>>>> -Wl,-rpath,/opt/cray/pe/mpich/8.1.4/ofi/cray/9.1/lib
> > >>>>>>>>>>> -L/opt/cray/pe/mpich/8.1.4/ofi/cray/9.1/lib
> > >>>>>>>>>>> -Wl,-rpath,/opt/cray/pe/mpich/8.1.4/gtl/lib
> > >>>>>>>>>>> -L/opt/cray/pe/mpich/8.1.4/gtl/lib
> -Wl,-rpath,/opt/cray/pe/pmi/6.0.10/lib
> > >>>>>>>>>>> -L/opt/cray/pe/pmi/6.0.10/lib
> -Wl,-rpath,/opt/cray/pe/dsmml/0.1.4/dsmml/lib
> > >>>>>>>>>>> -L/opt/cray/pe/dsmml/0.1.4/dsmml/lib
> > >>>>>>>>>>> -Wl,-rpath,/opt/cray/pe/cce/11.0.4/cce/x86_64/lib
> > >>>>>>>>>>> -L/opt/cray/pe/cce/11.0.4/cce/x86_64/lib
> > >>>>>>>>>>>
> -Wl,-rpath,/opt/cray/xpmem/2.2.40-2.1_2.7__g3cf3325.shasta/lib64
> > >>>>>>>>>>> -L/opt/cray/xpmem/2.2.40-2.1_2.7__g3cf3325.shasta/lib64
> > >>>>>>>>>>>
> -Wl,-rpath,/opt/cray/pe/cce/11.0.4/cce-clang/x86_64/lib/clang/11.0.0/lib/linux
> > >>>>>>>>>>>
> -L/opt/cray/pe/cce/11.0.4/cce-clang/x86_64/lib/clang/11.0.0/lib/linux
> > >>>>>>>>>>>
> -Wl,-rpath,/opt/gcc/8.1.0/snos/lib/gcc/x86_64-suse-linux/8.1.0
> > >>>>>>>>>>> -L/opt/gcc/8.1.0/snos/lib/gcc/x86_64-suse-linux/8.1.0
> > >>>>>>>>>>>
> -Wl,-rpath,/opt/cray/pe/cce/11.0.4/binutils/x86_64/x86_64-pc-linux-gnu/..//x86_64-unknown-linux-gnu/lib
> > >>>>>>>>>>>
> -L/opt/cray/pe/cce/11.0.4/binutils/x86_64/x86_64-pc-linux-gnu/..//x86_64-unknown-linux-gnu/lib
> > >>>>>>>>>>> -lpetsc -lkokkoskernels -lkokkoscontainers -lkokkoscore
> -lhipsparse
> > >>>>>>>>>>> -lhipblas -lrocsparse -lrocsolver -lrocblas -lamdhip64
> -lhsa-runtime64
> > >>>>>>>>>>> -lstdc++ -ldl -lpmi -lsci_cray_mpi -lsci_cray -lmpifort_cray
> -lmpi_cray
> > >>>>>>>>>>> -lmpi_gtl_hsa -lxpmem -ldsmml -lpgas-shmem -lquadmath
> -lcrayacc_amdgpu
> > >>>>>>>>>>> -lopenacc -lmodules -lfi -lcraymath -lf -lu -lcsup
> -lgfortran -lpthread
> > >>>>>>>>>>> -lgcc_eh -lm -lclang_rt.craypgo-x86_64
> -lclang_rt.builtins-x86_64
> > >>>>>>>>>>> -lquadmath -lstdc++ -ldl -o ex3k
> > >>>>>>>>>>> In file included from ex3k.kokkos.cxx:3:
> > >>>>>>>>>>> In file included from
> > >>>>>>>>>>>
> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscdmda_kokkos.hpp:4:
> > >>>>>>>>>>> In file included from
> > >>>>>>>>>>>
> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscvec_kokkos.hpp:14:
> > >>>>>>>>>>> In file included from
> > >>>>>>>>>>> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscvec.h:9:
> > >>>>>>>>>>> In file included from
> > >>>>>>>>>>>
> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscsys.h:42:
> > >>>>>>>>>>> In file included from
> > >>>>>>>>>>>
> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscsystypes.h:255:
> > >>>>>>>>>>> In file included from
> > >>>>>>>>>>>
> /gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/include/Kokkos_Complex.hpp:47:
> > >>>>>>>>>>> In file included from
> > >>>>>>>>>>>
> /gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/include/Kokkos_Atomic.hpp:212:
> > >>>>>>>>>>>
> /gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/include/impl/Kokkos_Atomic_Exchange.hpp:259:11:
> > >>>>>>>>>>> error: no member named 'lock_address_host_space' in namespace
> > >>>>>>>>>>> 'Kokkos::Impl::Kokkos::Impl'; did you mean simply
> 'lock_address_host_space'?
> > >>>>>>>>>>>   while (!Impl::lock_address_host_space((void*)dest))
> > >>>>>>>>>>>           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> > >>>>>>>>>>>           lock_address_host_space
> > >>>>>>>>>>>
> /gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/include/Kokkos_HostSpace.hpp:83:6:
> > >>>>>>>>>>> note: 'lock_address_host_space' declared here
> > >>>>>>>>>>> bool lock_address_host_space(void* ptr);
> > >>>>>>>>>>>      ^
> > >>>>>>>>>>> In file included from ex3k.kokkos.cxx:3:
> > >>>>>>>>>>> In file included from
> > >>>>>>>>>>>
> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscdmda_kokkos.hpp:4:
> > >>>>>>>>>>> In file included from
> > >>>>>>>>>>>
> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscvec_kokkos.hpp:14:
> > >>>>>>>>>>> In file included from
> > >>>>>>>>>>> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscvec.h:9:
> > >>>>>>>>>>> In file included from
> > >>>>>>>>>>>
> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscsys.h:42:
> > >>>>>>>>>>> In file included from
> > >>>>>>>>>>>
> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscsystypes.h:255:
> > >>>>>>>>>>> In file included from
> > >>>>>>>>>>>
> /gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/include/Kokkos_Complex.hpp:47:
> > >>>>>>>>>>> In file included from
> > >>>>>>>>>>>
> /gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/include/Kokkos_Atomic.hpp:212:
> > >>>>>>>>>>>
> /gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/include/impl/Kokkos_Atomic_Exchange.hpp:261:3:
> > >>>>>>>>>>> error: no member named 'memory_fence' in namespace
> 'Kokkos::Impl::Kokkos';
> > >>>>>>>>>>> did you mean simply 'memory_fence'?
> > >>>>>>>>>>>   Kokkos::memory_fence();
> > >>>>>>>>>>>   ^~~~~~~~~~~~~~~~~~~~
> > >>>>>>>>>>>   memory_fence
> > >>>>>>>>>>>
> /gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/include/impl/Kokkos_Memory_Fence.hpp:53:6:
> > >>>>>>>>>>> note: 'memory_fence' declared here
> > >>>>>>>>>>> void memory_fence() {
> > >>>>>>>>>>>      ^
> > >>>>>>>>>>> In file included from ex3k.kokkos.cxx:3:
> > >>>>>>>>>>> In file included from
> > >>>>>>>>>>>
> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscdmda_kokkos.hpp:4:
> > >>>>>>>>>>> In file included from
> > >>>>>>>>>>>
> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscvec_kokkos.hpp:14:
> > >>>>>>>>>>> In file included from
> > >>>>>>>>>>> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscvec.h:9:
> > >>>>>>>>>>> In file included from
> > >>>>>>>>>>>
> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscsys.h:42:
> > >>>>>>>>>>> In file included from
> > >>>>>>>>>>>
> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscsystypes.h:255:
> > >>>>>>>>>>> In file included from
> > >>>>>>>>>>>
> /gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/include/Kokkos_Complex.hpp:47:
> > >>>>>>>>>>> In file included from
> > >>>>>>>>>>>
> /gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/include/Kokkos_Atomic.hpp:212:
> > >>>>>>>>>>>
> /gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/include/impl/Kokkos_Atomic_Exchange.hpp:277:3:
> > >>>>>>>>>>> error: no member named 'memory_fence' in namespace
> 'Kokkos::Impl::Kokkos';
> > >>>>>>>>>>> did you mean simply 'memory_fence'?
> > >>>>>>>>>>>   Kokkos::memory_fence();
> > >>>>>>>>>>>   ^~~~~~~~~~~~~~~~~~~~
> > >>>>>>>>>>>   memory_fence
> > >>>>>>>>>>>
> /gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/include/impl/Kokkos_Memory_Fence.hpp:53:6:
> > >>>>>>>>>>> note: 'memory_fence' declared here
> > >>>>>>>>>>> void memory_fence() {
> > >>>>>>>>>>>      ^
> > >>>>>>>>>>>
> > >>>>>>>>>>
>
>
>
>
> --
> Scott Kruger
> Tech-X Corporation               kruger at txcorp.com
> 5621 Arapahoe Ave, Suite A       Phone: (720) 466-3196
> Boulder, CO 80303                Fax:   (303) 448-7756
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.mcs.anl.gov/pipermail/petsc-dev/attachments/20210720/f305c1a0/attachment-0001.html>

More information about the petsc-dev mailing list