[petsc-dev] Kokkos make error on Spock
Scott Kruger
kruger at txcorp.com
Mon Jul 19 17:40:58 CDT 2021
Mark,
On tulip, things with fortran went wonky when a `-fast` flag snuck into
the flags (snuck in being me copying a previous configure file and not
questioning the flags). The reason is that for clang, `-fast` implies
link time optimization (lto) for C/C++ code, but flang doesn't support
lto so things got weird. I suspect that gfortran does not either (but
perhaps the real question is why not use flang?)
I look at configure and I don't see anything in your flags that would
trigger lto, but as Junchao says, it might be picking something up from
Kokkos, so perhaps this is the issue.
Scott
On 2021-07-19 07:19, Mark Adams did write:
> Thanks, but this happens w/o Kokkos.
> I've stripped this down and attached good/bad logs without/with Fortran
> bindings.
> Hope this helps,
> Thanks again,
> Mark
>
> On Sun, Jul 18, 2021 at 12:00 PM Stefano Zampini <stefano.zampini at gmail.com>
> wrote:
>
> > This is probably kokkos pulling in the dependencies where compiling kokkos
> > source within PETSc.
> >
> > Il Dom 18 Lug 2021, 16:29 Mark Adams <mfadams at lbl.gov> ha scritto:
> >
> >> Whoops, this error was just from not telling gfortran to allow long lines.
> >>
> >> Anway, I did find that the when fortran bindings are enabled this OMP
> >> thing gets into the library. No idea how. I'll askm ORNL.
> >>
> >> 10:26 jczhang/fix-cray-mpicxx-includes/main=
> >> /gpfs/alpine/csc314/scratch/adams/petsc2$ nm
> >> /gpfs/alpine/csc314/scratch/adams/petsc2/arch-spock-opt-cray-kokkos/lib/libpetsc.so
> >> |g offload
> >> U .omp_offloading.img_cache.cray_amdgcn-amd-amdhsa
> >> U .omp_offloading.img_size.cray_amdgcn-amd-amdhsa
> >> U .omp_offloading.img_start.cray_amdgcn-amd-amdhsa
> >> 0000000001d457b0 T vecgetoffloadmask_
> >>
> >>
> >> On Sun, Jul 18, 2021 at 8:43 AM Mark Adams <mfadams at lbl.gov> wrote:
> >>
> >>> Ah, your test was not on Spock ... I have something working but this is
> >>> strange.
> >>>
> >>> I switched to the GNU ProgEnv. and it passed the Fortran test in
> >>> 'check', but this failed:
> >>>
> >>>
> >>>
> >>>
> >>>
> >>>
> >>>
> >>>
> >>>
> >>> *08:26 2 jczhang/fix-cray-mpicxx-includes/main=
> >>> /gpfs/alpine/csc314/scratch/adams/petsc/src/snes/tutorials$ make
> >>> PETSC_DIR=/gpfs/alpine/phy122/proj-shared/spock/petsc/current/arch-dbg-gnu
> >>> PETSC_ARCH="" ex40f90ftn -L/sw/spock/spack-envs/views/rocm-4.1.0/lib
> >>> -lamdhip64 -lhsa-runtime64 -fPIC -g -O0 -fPIC -g -O0
> >>> -I/gpfs/alpine/phy122/proj-shared/spock/petsc/current/arch-dbg-gnu/include
> >>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include ex40f90.F90
> >>> -Wl,-rpath,/gpfs/alpine/phy122/proj-shared/spock/petsc/current/arch-dbg-gnu/lib
> >>> -L/gpfs/alpine/phy122/proj-shared/spock/petsc/current/arch-dbg-gnu/lib
> >>> -Wl,-rpath,/sw/spock/spack-envs/views/rocm-4.1.0/lib
> >>> -L/sw/spock/spack-envs/views/rocm-4.1.0/lib
> >>> -Wl,-rpath,/opt/cray/pe/mpich/8.1.4/ofi/gnu/9.1/lib
> >>> -L/opt/cray/pe/mpich/8.1.4/ofi/gnu/9.1/lib
> >>> -Wl,-rpath,/opt/cray/pe/mpich/8.1.4/gtl/lib
> >>> -L/opt/cray/pe/mpich/8.1.4/gtl/lib
> >>> -Wl,-rpath,/opt/cray/pe/libsci/21.04.1.1/GNU/9.1/x86_64/lib
> >>> <http://21.04.1.1/GNU/9.1/x86_64/lib>
> >>> -L/opt/cray/pe/libsci/21.04.1.1/GNU/9.1/x86_64/lib
> >>> <http://21.04.1.1/GNU/9.1/x86_64/lib>
> >>> -Wl,-rpath,/opt/cray/pe/pmi/6.0.10/lib -L/opt/cray/pe/pmi/6.0.10/lib
> >>> -Wl,-rpath,/opt/cray/pe/dsmml/0.1.4/dsmml/lib
> >>> -L/opt/cray/pe/dsmml/0.1.4/dsmml/lib
> >>> -Wl,-rpath,/opt/cray/xpmem/2.2.40-2.1_2.7__g3cf3325.shasta/lib64
> >>> -L/opt/cray/xpmem/2.2.40-2.1_2.7__g3cf3325.shasta/lib64
> >>> -Wl,-rpath,/opt/gcc/10.2.0/snos/lib/gcc/x86_64-suse-linux/10.2.0
> >>> -L/opt/gcc/10.2.0/snos/lib/gcc/x86_64-suse-linux/10.2.0
> >>> -Wl,-rpath,/opt/gcc/10.2.0/snos/lib64 -L/opt/gcc/10.2.0/snos/lib64
> >>> -Wl,-rpath,/sw/spock/spack-envs/views/rocm-4.1.0/llvm/lib
> >>> -L/sw/spock/spack-envs/views/rocm-4.1.0/llvm/lib
> >>> -Wl,-rpath,/opt/gcc/10.2.0/snos/lib -L/opt/gcc/10.2.0/snos/lib -lpetsc
> >>> -lhipsparse -lhipblas -lrocsparse -lrocsolver -lrocblas -lamdhip64
> >>> -lhsa-runtime64 -lstdc++ -ldl -lpmi -lmpi_gtl_hsa -lxpmem -lgfortran -lm
> >>> -lsci_gnu_82_mpi -lsci_gnu_82 -lmpifort_gnu_91 -lmpi_gnu_91 -ldsmml
> >>> -lgfortran -lquadmath -lpthread -lm -lgcc_s -lquadmath -lstdc++ -ldl -o
> >>> ex40f90ex40f90.F90:35:132: 35 | call
> >>> DMDACreate2d(PETSC_COMM_WORLD,DM_BOUNDARY_NONE,DM_BOUNDARY_NONE,DMDA_STENCIL_BOX,ten,ten,PETSC_DECIDE,PETSC_DECIDE,two,one,
> >>> & |
> >>> 1Error:
> >>> Line truncated at (1) [-Werror=line-truncation]ex40f90.F90:35:132:*
> >>> * ....*
> >>>
> >>> But ex5f (the Fortran check test) does work manually also (sanity check).
> >>>
> >>> Oddly I seem to have the cray compilers:
> >>>
> >>> 08:34 jczhang/fix-cray-mpicxx-includes/main=
> >>> /gpfs/alpine/csc314/scratch/adams/petsc/src/snes/tutorials$ which ftn
> >>> /opt/cray/pe/craype/2.7.6/bin/ftn
> >>>
> >>> yet it is GNU:
> >>>
> >>> 08:34 jczhang/fix-cray-mpicxx-includes/main=
> >>> /gpfs/alpine/csc314/scratch/adams/petsc/src/snes/tutorials$ ftn --version
> >>> GNU Fortran (GCC) 10.2.0 20200723 (Cray Inc.)
> >>> Copyright (C) 2020 Free Software Foundation, Inc.
> >>> This is free software; see the source for copying conditions. There is
> >>> NO
> >>> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR
> >>> PURPOSE.
> >>>
> >>> The documentation says ftn should be here:
> >>>
> >>> 08:34 jczhang/fix-cray-mpicxx-includes/main=
> >>> /gpfs/alpine/csc314/scratch/adams/petsc/src/snes/tutorials$
> >>> $GCC_PATH/bin/gfortran --version
> >>> GNU Fortran (GCC) 10.2.0 20200723 (Cray Inc.)
> >>> Copyright (C) 2020 Free Software Foundation, Inc.
> >>> This is free software; see the source for copying conditions. There is
> >>> NO
> >>> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR
> >>> PURPOSE.
> >>>
> >>> Same, but the path is not the same:
> >>>
> >>> 08:39 jczhang/fix-cray-mpicxx-includes/main=
> >>> /gpfs/alpine/csc314/scratch/adams/petsc/src/snes/tutorials$ echo $GCC_PATH
> >>> /opt/gcc/10.2.0
> >>>
> >>> Anyway, thanks for your help,
> >>> Mark
> >>>
> >>> On Sat, Jul 17, 2021 at 11:26 PM Junchao Zhang <junchao.zhang at gmail.com>
> >>> wrote:
> >>>
> >>>> Mark, I can reproduce this error with PrgEnv-cray, i.e., using the
> >>>> Cray compiler (clang-11). Previously I used PrgEnv-gnu, which did not have
> >>>> this error.
> >>>> Probably it is a problem of Spock. But I am not sure.
> >>>>
> >>>> --Junchao Zhang
> >>>>
> >>>>
> >>>> On Sat, Jul 17, 2021 at 10:17 AM Mark Adams <mfadams at lbl.gov> wrote:
> >>>>
> >>>>> And I can run a fortran test, with warnings, but C tests fail:
> >>>>>
> >>>>> 11:15 jczhang/fix-cray-mpicxx-includes/main=
> >>>>> /gpfs/alpine/csc314/scratch/adams/petsc$ make
> >>>>> PETSC_DIR=/gpfs/alpine/csc314/scratch/adams/petsc
> >>>>> PETSC_ARCH=arch-spock-opt-cray-kokkos -f gmakefile test
> >>>>> search='ts_utils_dmplexlandau_tutorials-ex1f90_0'
> >>>>> Using MAKEFLAGS: -- search=ts_utils_dmplexlandau_tutorials-ex1f90_0
> >>>>> PETSC_ARCH=arch-spock-opt-cray-kokkos
> >>>>> PETSC_DIR=/gpfs/alpine/csc314/scratch/adams/petsc
> >>>>> FC
> >>>>> arch-spock-opt-cray-kokkos/tests/ts/utils/dmplexlandau/tutorials/ex1f90.o
> >>>>> FLINKER
> >>>>> arch-spock-opt-cray-kokkos/tests/ts/utils/dmplexlandau/tutorials/ex1f90
> >>>>> /opt/cray/pe/cce/11.0.4/binutils/x86_64/x86_64-pc-linux-gnu/bin/ld:
> >>>>> warning: alignment 128 of symbol
> >>>>> `$host_init$$runtime_init_for_iso_c_binding$iso_c_binding_' in
> >>>>> /opt/cray/pe/cce/11.0.4/cce/x86_64/lib/libmodules.so is smaller than 256 in
> >>>>> arch-spock-opt-cray-kokkos/tests/ts/utils/dmplexlandau/tutorials/ex1f90.o
> >>>>> /opt/cray/pe/cce/11.0.4/binutils/x86_64/x86_64-pc-linux-gnu/bin/ld:
> >>>>> warning: alignment 64 of symbol `$data_init$iso_c_binding_' in
> >>>>> /opt/cray/pe/cce/11.0.4/cce/x86_64/lib/libmodules.so is smaller than 256 in
> >>>>> arch-spock-opt-cray-kokkos/tests/ts/utils/dmplexlandau/tutorials/ex1f90.o
> >>>>> TEST
> >>>>> arch-spock-opt-cray-kokkos/tests/counts/ts_utils_dmplexlandau_tutorials-ex1f90_0.counts
> >>>>> ok ts_utils_dmplexlandau_tutorials-ex1f90_0
> >>>>> ok diff-ts_utils_dmplexlandau_tutorials-ex1f90_0
> >>>>>
> >>>>>
> >>>>> On Sat, Jul 17, 2021 at 10:53 AM Mark Adams <mfadams at lbl.gov> wrote:
> >>>>>
> >>>>>> HUmm, I can not reproduce this.
> >>>>>>
> >>>>>> 10:49 jczhang/fix-cray-mpicxx-includes/main=
> >>>>>> /gpfs/alpine/csc314/scratch/adams/petsc$ make
> >>>>>> PETSC_DIR=/gpfs/alpine/csc314/scratch/adams/petsc
> >>>>>> PETSC_ARCH=arch-spock-dbg-kokkos check
> >>>>>> Running check examples to verify correct installation
> >>>>>> Using PETSC_DIR=/gpfs/alpine/csc314/scratch/adams/petsc and
> >>>>>> PETSC_ARCH=arch-spock-dbg-kokkos
> >>>>>> gmake[3]:
> >>>>>> [/gpfs/alpine/csc314/scratch/adams/petsc/lib/petsc/conf/rules:301:
> >>>>>> ex19.PETSc] Error 2 (ignored)
> >>>>>> *******************Error detected during compile or
> >>>>>> link!*******************
> >>>>>> See http://www.mcs.anl.gov/petsc/documentation/faq.html
> >>>>>> /gpfs/alpine/csc314/scratch/adams/petsc/src/snes/tutorials ex19
> >>>>>>
> >>>>>> *********************************************************************************
> >>>>>> cc -L/sw/spock/spack-envs/views/rocm-4.1.0/lib -lamdhip64
> >>>>>> -lhsa-runtime64 -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing
> >>>>>> -Wno-unknown-pragmas -fstack-protector -Qunused-arguments
> >>>>>> -fvisibility=hidden -g -O0 -fPIC -Wall -Wwrite-strings
> >>>>>> -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector
> >>>>>> -Qunused-arguments -fvisibility=hidden -g -O0
> >>>>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include
> >>>>>> -I/gpfs/alpine/csc314/scratch/adams/petsc/include
> >>>>>> -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/include
> >>>>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include
> >>>>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include ex19.c
> >>>>>> -Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib
> >>>>>> -L/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib
> >>>>>> -Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib
> >>>>>> -L/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib
> >>>>>> -Wl,-rpath,/sw/spock/spack-envs/views/rocm-4.1.0/lib
> >>>>>> -L/sw/spock/spack-envs/views/rocm-4.1.0/lib
> >>>>>> -Wl,-rpath,/opt/gcc/8.1.0/snos/lib64 -L/opt/gcc/8.1.0/snos/lib64
> >>>>>> -Wl,-rpath,/opt/cray/pe/libsci/21.04.1.1/CRAY/9.0/x86_64/lib
> >>>>>> -L/opt/cray/pe/libsci/21.04.1.1/CRAY/9.0/x86_64/lib
> >>>>>> -Wl,-rpath,/opt/cray/pe/mpich/8.1.4/ofi/cray/9.1/lib
> >>>>>> -L/opt/cray/pe/mpich/8.1.4/ofi/cray/9.1/lib
> >>>>>> -Wl,-rpath,/opt/cray/pe/mpich/8.1.4/gtl/lib
> >>>>>> -L/opt/cray/pe/mpich/8.1.4/gtl/lib -Wl,-rpath,/opt/cray/pe/pmi/6.0.10/lib
> >>>>>> -L/opt/cray/pe/pmi/6.0.10/lib -Wl,-rpath,/opt/cray/pe/dsmml/0.1.4/dsmml/lib
> >>>>>> -L/opt/cray/pe/dsmml/0.1.4/dsmml/lib
> >>>>>> -Wl,-rpath,/opt/cray/pe/cce/11.0.4/cce/x86_64/lib
> >>>>>> -L/opt/cray/pe/cce/11.0.4/cce/x86_64/lib
> >>>>>> -Wl,-rpath,/opt/cray/xpmem/2.2.40-2.1_2.7__g3cf3325.shasta/lib64
> >>>>>> -L/opt/cray/xpmem/2.2.40-2.1_2.7__g3cf3325.shasta/lib64
> >>>>>> -Wl,-rpath,/opt/cray/pe/cce/11.0.4/cce-clang/x86_64/lib/clang/11.0.0/lib/linux
> >>>>>> -L/opt/cray/pe/cce/11.0.4/cce-clang/x86_64/lib/clang/11.0.0/lib/linux
> >>>>>> -Wl,-rpath,/opt/gcc/8.1.0/snos/lib/gcc/x86_64-suse-linux/8.1.0
> >>>>>> -L/opt/gcc/8.1.0/snos/lib/gcc/x86_64-suse-linux/8.1.0
> >>>>>> -Wl,-rpath,/opt/cray/pe/cce/11.0.4/binutils/x86_64/x86_64-pc-linux-gnu/..//x86_64-unknown-linux-gnu/lib
> >>>>>> -L/opt/cray/pe/cce/11.0.4/binutils/x86_64/x86_64-pc-linux-gnu/..//x86_64-unknown-linux-gnu/lib
> >>>>>> -lpetsc -lkokkoskernels -lkokkoscontainers -lkokkoscore -lhipsparse
> >>>>>> -lhipblas -lrocsparse -lrocsolver -lrocblas -lamdhip64 -lhsa-runtime64
> >>>>>> -lstdc++ -ldl -lpmi -lsci_cray_mpi -lsci_cray -lmpifort_cray -lmpi_cray
> >>>>>> -lmpi_gtl_hsa -lxpmem -ldsmml -lpgas-shmem -lquadmath -lcrayacc_amdgpu
> >>>>>> -lopenacc -lmodules -lfi -lcraymath -lf -lu -lcsup -lgfortran -lpthread
> >>>>>> -lgcc_eh -lm -lclang_rt.craypgo-x86_64 -lclang_rt.builtins-x86_64
> >>>>>> -lquadmath -lstdc++ -ldl -o ex19
> >>>>>> ld.lld: error:
> >>>>>> /gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib/libpetsc.so:
> >>>>>> undefined reference to .omp_offloading.img_start.cray_amdgcn-amd-amdhsa
> >>>>>> [--no-allow-shlib-undefined]
> >>>>>> ld.lld: error:
> >>>>>> /gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib/libpetsc.so:
> >>>>>> undefined reference to .omp_offloading.img_size.cray_amdgcn-amd-amdhsa
> >>>>>> [--no-allow-shlib-undefined]
> >>>>>> ld.lld: error:
> >>>>>> /gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib/libpetsc.so:
> >>>>>> undefined reference to .omp_offloading.img_cache.cray_amdgcn-amd-amdhsa
> >>>>>> [--no-allow-shlib-undefined]
> >>>>>> clang-11: error: linker command failed with exit code 1 (use -v to
> >>>>>> see invocation)
> >>>>>> gmake[4]: *** [<builtin>: ex19] Error 1
> >>>>>> gmake[3]:
> >>>>>> [/gpfs/alpine/csc314/scratch/adams/petsc/lib/petsc/conf/rules:301:
> >>>>>> ex3k.PETSc] Error 2 (ignored)
> >>>>>> *******************Error detected during compile or
> >>>>>> link!*******************
> >>>>>> See http://www.mcs.anl.gov/petsc/documentation/faq.html
> >>>>>> /gpfs/alpine/csc314/scratch/adams/petsc/src/snes/tutorials ex3k
> >>>>>>
> >>>>>> *********************************************************************************
> >>>>>> hipcc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing
> >>>>>> -Wno-unknown-pragmas -fvisibility=hidden -g -O0 -std=c++14
> >>>>>> -I/gpfs/alpine/csc314/scratch/adams/petsc/include
> >>>>>> -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/include
> >>>>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include
> >>>>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include -I/opt/cray/pe/libsci/
> >>>>>> 21.04.1.1/CRAY/9.0/x86_64/include
> >>>>>> -I/opt/cray/pe/mpich/8.1.4/ofi/cray/9.1/include
> >>>>>> -I/opt/cray/pe/pmi/6.0.10/include -I/opt/cray/pe/dsmml/0.1.4/dsmml//include
> >>>>>> -I/opt/cray/xpmem/2.2.40-2.1_2.7__g3cf3325.shasta/include
> >>>>>> -L/opt/cray/pe/libsci/21.04.1.1/CRAY/9.0/x86_64/lib
> >>>>>> -L/opt/cray/pe/mpich/8.1.4/ofi/cray/9.1/lib
> >>>>>> -L/opt/cray/pe/mpich/8.1.4/gtl/lib -L/opt/cray/pe/pmi/6.0.10/lib
> >>>>>> -L/opt/cray/pe/dsmml/0.1.4/dsmml//lib
> >>>>>> -L/opt/cray/pe/cce/11.0.4/cce/x86_64/lib/pkgconfig/../
> >>>>>> -L/opt/cray/xpmem/2.2.40-2.1_2.7__g3cf3325.shasta/lib64
> >>>>>> -Wl,--as-needed,-lsci_cray_mpi,--no-as-needed
> >>>>>> -Wl,--as-needed,-lsci_cray,--no-as-needed
> >>>>>> -Wl,--as-needed,-lmpi_cray,--no-as-needed
> >>>>>> -Wl,--as-needed,-ldsmml,--no-as-needed
> >>>>>> -Wl,--as-needed,-lpgas-shmem,--no-as-needed -lpmi -ldl -lmpi_gtl_hsa
> >>>>>> -lxpmem -lquadmath -lmodules -lfi -lcraymath -lf -lu -lcsup
> >>>>>> ex3k.kokkos.cxx
> >>>>>> -Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib
> >>>>>> -L/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib
> >>>>>> -Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib
> >>>>>> -L/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib
> >>>>>> -Wl,-rpath,/sw/spock/spack-envs/views/rocm-4.1.0/lib
> >>>>>> -L/sw/spock/spack-envs/views/rocm-4.1.0/lib
> >>>>>> -Wl,-rpath,/opt/gcc/8.1.0/snos/lib64 -L/opt/gcc/8.1.0/snos/lib64
> >>>>>> -Wl,-rpath,/opt/cray/pe/libsci/21.04.1.1/CRAY/9.0/x86_64/lib
> >>>>>> -L/opt/cray/pe/libsci/21.04.1.1/CRAY/9.0/x86_64/lib
> >>>>>> -Wl,-rpath,/opt/cray/pe/mpich/8.1.4/ofi/cray/9.1/lib
> >>>>>> -L/opt/cray/pe/mpich/8.1.4/ofi/cray/9.1/lib
> >>>>>> -Wl,-rpath,/opt/cray/pe/mpich/8.1.4/gtl/lib
> >>>>>> -L/opt/cray/pe/mpich/8.1.4/gtl/lib -Wl,-rpath,/opt/cray/pe/pmi/6.0.10/lib
> >>>>>> -L/opt/cray/pe/pmi/6.0.10/lib -Wl,-rpath,/opt/cray/pe/dsmml/0.1.4/dsmml/lib
> >>>>>> -L/opt/cray/pe/dsmml/0.1.4/dsmml/lib
> >>>>>> -Wl,-rpath,/opt/cray/pe/cce/11.0.4/cce/x86_64/lib
> >>>>>> -L/opt/cray/pe/cce/11.0.4/cce/x86_64/lib
> >>>>>> -Wl,-rpath,/opt/cray/xpmem/2.2.40-2.1_2.7__g3cf3325.shasta/lib64
> >>>>>> -L/opt/cray/xpmem/2.2.40-2.1_2.7__g3cf3325.shasta/lib64
> >>>>>> -Wl,-rpath,/opt/cray/pe/cce/11.0.4/cce-clang/x86_64/lib/clang/11.0.0/lib/linux
> >>>>>> -L/opt/cray/pe/cce/11.0.4/cce-clang/x86_64/lib/clang/11.0.0/lib/linux
> >>>>>> -Wl,-rpath,/opt/gcc/8.1.0/snos/lib/gcc/x86_64-suse-linux/8.1.0
> >>>>>> -L/opt/gcc/8.1.0/snos/lib/gcc/x86_64-suse-linux/8.1.0
> >>>>>> -Wl,-rpath,/opt/cray/pe/cce/11.0.4/binutils/x86_64/x86_64-pc-linux-gnu/..//x86_64-unknown-linux-gnu/lib
> >>>>>> -L/opt/cray/pe/cce/11.0.4/binutils/x86_64/x86_64-pc-linux-gnu/..//x86_64-unknown-linux-gnu/lib
> >>>>>> -lpetsc -lkokkoskernels -lkokkoscontainers -lkokkoscore -lhipsparse
> >>>>>> -lhipblas -lrocsparse -lrocsolver -lrocblas -lamdhip64 -lhsa-runtime64
> >>>>>> -lstdc++ -ldl -lpmi -lsci_cray_mpi -lsci_cray -lmpifort_cray -lmpi_cray
> >>>>>> -lmpi_gtl_hsa -lxpmem -ldsmml -lpgas-shmem -lquadmath -lcrayacc_amdgpu
> >>>>>> -lopenacc -lmodules -lfi -lcraymath -lf -lu -lcsup -lgfortran -lpthread
> >>>>>> -lgcc_eh -lm -lclang_rt.craypgo-x86_64 -lclang_rt.builtins-x86_64
> >>>>>> -lquadmath -lstdc++ -ldl -o ex3k
> >>>>>> /usr/lib64/gcc/x86_64-suse-linux/7/../../../../x86_64-suse-linux/bin/ld:
> >>>>>> /gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib/libpetsc.so:
> >>>>>> undefined reference to `.omp_offloading.img_size.cray_amdgcn-amd-amdhsa'
> >>>>>> /usr/lib64/gcc/x86_64-suse-linux/7/../../../../x86_64-suse-linux/bin/ld:
> >>>>>> /gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib/libpetsc.so:
> >>>>>> undefined reference to `.omp_offloading.img_start.cray_amdgcn-amd-amdhsa'
> >>>>>> /usr/lib64/gcc/x86_64-suse-linux/7/../../../../x86_64-suse-linux/bin/ld:
> >>>>>> /gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib/libpetsc.so:
> >>>>>> undefined reference to `.omp_offloading.img_cache.cray_amdgcn-amd-amdhsa'
> >>>>>> clang-12: error: linker command failed with exit code 1 (use -v to
> >>>>>> see invocation)
> >>>>>> gmake[4]: ***
> >>>>>> [/gpfs/alpine/csc314/scratch/adams/petsc/lib/petsc/conf/test:26: ex3k]
> >>>>>> Error 1
> >>>>>> gmake[3]: [makefile:102: runex3k_kokkos] Error 2 (ignored)
> >>>>>> 1,25c1,4
> >>>>>> < atol=1e-50, rtol=1e-08, stol=1e-08, maxit=50, maxf=10000
> >>>>>> < Vec Object: Exact Solution 2 MPI processes
> >>>>>> < type: mpikokkos
> >>>>>> < Process [0]
> >>>>>> < 0.
> >>>>>> < 0.015625
> >>>>>> < 0.125
> >>>>>> < Process [1]
> >>>>>> < 0.421875
> >>>>>> < 1.
> >>>>>> < Vec Object: Forcing function 2 MPI processes
> >>>>>> < type: mpikokkos
> >>>>>> < Process [0]
> >>>>>> < 1e-72
> >>>>>> < 1.50024
> >>>>>> < 3.01563
> >>>>>> < Process [1]
> >>>>>> < 4.67798
> >>>>>> < 7.
> >>>>>> < 0 SNES Function norm 5.414682427127e+00
> >>>>>> < 1 SNES Function norm 2.952582418265e-01
> >>>>>> < 2 SNES Function norm 4.502293658739e-04
> >>>>>> < 3 SNES Function norm 1.389665806646e-09
> >>>>>> < Number of SNES iterations = 3
> >>>>>> < Norm of error 1.49752e-10 Iterations 3
> >>>>>> ---
> >>>>>> > slurmstepd: error: execve():
> >>>>>> /gpfs/alpine/csc314/scratch/adams/petsc/src/snes/tutorials/./ex3k: No such
> >>>>>> file or directory
> >>>>>> > slurmstepd: error: execve():
> >>>>>> /gpfs/alpine/csc314/scratch/adams/petsc/src/snes/tutorials/./ex3k: No such
> >>>>>> file or directory
> >>>>>> > srun: error: spock01: tasks 0-1: Exited with exit code 2
> >>>>>> > srun: launch/slurm: _step_signal: Terminating StepId=272979.0
> >>>>>> /gpfs/alpine/csc314/scratch/adams/petsc/src/snes/tutorials
> >>>>>> Possible problem with ex3k running with kokkos-kernels, diffs above
> >>>>>> =========================================
> >>>>>> *******************Error detected during compile or
> >>>>>> link!*******************
> >>>>>> See http://www.mcs.anl.gov/petsc/documentation/faq.html
> >>>>>> /gpfs/alpine/csc314/scratch/adams/petsc/src/snes/tutorials ex5f
> >>>>>> *********************************************************
> >>>>>> ftn -L/sw/spock/spack-envs/views/rocm-4.1.0/lib -lamdhip64
> >>>>>> -lhsa-runtime64 -fPIC -g -O0 -fPIC -g -O0
> >>>>>> -I/gpfs/alpine/csc314/scratch/adams/petsc/include
> >>>>>> -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/include
> >>>>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include ex5f.F90
> >>>>>> -Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib
> >>>>>> -L/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib
> >>>>>> -Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib
> >>>>>> -L/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib
> >>>>>> -Wl,-rpath,/sw/spock/spack-envs/views/rocm-4.1.0/lib
> >>>>>> -L/sw/spock/spack-envs/views/rocm-4.1.0/lib
> >>>>>> -Wl,-rpath,/opt/gcc/8.1.0/snos/lib64 -L/opt/gcc/8.1.0/snos/lib64
> >>>>>> -Wl,-rpath,/opt/cray/pe/libsci/21.04.1.1/CRAY/9.0/x86_64/lib
> >>>>>> -L/opt/cray/pe/libsci/21.04.1.1/CRAY/9.0/x86_64/lib
> >>>>>> -Wl,-rpath,/opt/cray/pe/mpich/8.1.4/ofi/cray/9.1/lib
> >>>>>> -L/opt/cray/pe/mpich/8.1.4/ofi/cray/9.1/lib
> >>>>>> -Wl,-rpath,/opt/cray/pe/mpich/8.1.4/gtl/lib
> >>>>>> -L/opt/cray/pe/mpich/8.1.4/gtl/lib -Wl,-rpath,/opt/cray/pe/pmi/6.0.10/lib
> >>>>>> -L/opt/cray/pe/pmi/6.0.10/lib -Wl,-rpath,/opt/cray/pe/dsmml/0.1.4/dsmml/lib
> >>>>>> -L/opt/cray/pe/dsmml/0.1.4/dsmml/lib
> >>>>>> -Wl,-rpath,/opt/cray/pe/cce/11.0.4/cce/x86_64/lib
> >>>>>> -L/opt/cray/pe/cce/11.0.4/cce/x86_64/lib
> >>>>>> -Wl,-rpath,/opt/cray/xpmem/2.2.40-2.1_2.7__g3cf3325.shasta/lib64
> >>>>>> -L/opt/cray/xpmem/2.2.40-2.1_2.7__g3cf3325.shasta/lib64
> >>>>>> -Wl,-rpath,/opt/cray/pe/cce/11.0.4/cce-clang/x86_64/lib/clang/11.0.0/lib/linux
> >>>>>> -L/opt/cray/pe/cce/11.0.4/cce-clang/x86_64/lib/clang/11.0.0/lib/linux
> >>>>>> -Wl,-rpath,/opt/gcc/8.1.0/snos/lib/gcc/x86_64-suse-linux/8.1.0
> >>>>>> -L/opt/gcc/8.1.0/snos/lib/gcc/x86_64-suse-linux/8.1.0
> >>>>>> -Wl,-rpath,/opt/cray/pe/cce/11.0.4/binutils/x86_64/x86_64-pc-linux-gnu/..//x86_64-unknown-linux-gnu/lib
> >>>>>> -L/opt/cray/pe/cce/11.0.4/binutils/x86_64/x86_64-pc-linux-gnu/..//x86_64-unknown-linux-gnu/lib
> >>>>>> -lpetsc -lkokkoskernels -lkokkoscontainers -lkokkoscore -lhipsparse
> >>>>>> -lhipblas -lrocsparse -lrocsolver -lrocblas -lamdhip64 -lhsa-runtime64
> >>>>>> -lstdc++ -ldl -lpmi -lsci_cray_mpi -lsci_cray -lmpifort_cray -lmpi_cray
> >>>>>> -lmpi_gtl_hsa -lxpmem -ldsmml -lpgas-shmem -lquadmath -lcrayacc_amdgpu
> >>>>>> -lopenacc -lmodules -lfi -lcraymath -lf -lu -lcsup -lgfortran -lpthread
> >>>>>> -lgcc_eh -lm -lclang_rt.craypgo-x86_64 -lclang_rt.builtins-x86_64
> >>>>>> -lquadmath -lstdc++ -ldl -o ex5f
> >>>>>> /opt/cray/pe/cce/11.0.4/binutils/x86_64/x86_64-pc-linux-gnu/bin/ld:
> >>>>>> warning: alignment 128 of symbol
> >>>>>> `$host_init$$runtime_init_for_iso_c_binding$iso_c_binding_' in
> >>>>>> /opt/cray/pe/cce/11.0.4/cce/x86_64/lib/libmodules.so is smaller than 256 in
> >>>>>> /tmp/pe_30429/ex5f_1.o
> >>>>>> /opt/cray/pe/cce/11.0.4/binutils/x86_64/x86_64-pc-linux-gnu/bin/ld:
> >>>>>> warning: alignment 64 of symbol `$data_init$iso_c_binding_' in
> >>>>>> /opt/cray/pe/cce/11.0.4/cce/x86_64/lib/libmodules.so is smaller than 256 in
> >>>>>> /tmp/pe_30429/ex5f_1.o
> >>>>>> Fortran example src/snes/tutorials/ex5f run successfully with 1 MPI
> >>>>>> process
> >>>>>> Completed test examples
> >>>>>> 10:49 jczhang/fix-cray-mpicxx-includes/main=
> >>>>>> /gpfs/alpine/csc314/scratch/adams/petsc$ ll
> >>>>>>
> >>>>>> On Fri, Jul 16, 2021 at 11:28 PM Junchao Zhang <
> >>>>>> junchao.zhang at gmail.com> wrote:
> >>>>>>
> >>>>>>> Mark, I configured with Fortran binding enabled with main + MR !4175
> >>>>>>> <https://gitlab.com/petsc/petsc/-/merge_requests/4175>
> >>>>>>>
> >>>>>>> '--with-mpiexec=srun',
> >>>>>>> '--with-shared-libraries=1',
> >>>>>>> '--with-cc=cc',
> >>>>>>> '--with-cxx=CC',
> >>>>>>> '--with-fc=ftn',
> >>>>>>> '--with-fortran-bindings',
> >>>>>>> '--with-hip',
> >>>>>>> '--with-hipc=hipcc',
> >>>>>>> '--with-debugging',
> >>>>>>> '--CPPFLAGS=-I${ROCM_PATH}/include',
> >>>>>>> '--CXXPPFLAGS=-I${ROCM_PATH}/include',
> >>>>>>> '--CC_LINKER_FLAGS=-L${ROCM_PATH}/lib -lamdhip64 -lhsa-runtime64',
> >>>>>>> '--CXX_LINKER_FLAGS=-L${ROCM_PATH}/lib -lamdhip64 -lhsa-runtime64',
> >>>>>>> '--FC_LINKER_FLAGS=-L${ROCM_PATH}/lib -lamdhip64 -lhsa-runtime64',
> >>>>>>> '--COPTFLAGS=-g -O0',
> >>>>>>> '--CXXOPTFLAGS=-g -O0',
> >>>>>>> '--FOPTFLAGS=-g -O0',
> >>>>>>> '--download-kokkos',
> >>>>>>> '--download-kokkos-kernels',
> >>>>>>> '--download-kokkos-commit=3.4.01',
> >>>>>>> '--download-kokkos-kernels-commit=3.4.01',
> >>>>>>> '--with-kokkos-hip-arch=VEGA908',
> >>>>>>>
> >>>>>>> and 'make check' ran smoothly on a compute node
> >>>>>>>
> >>>>>>> $ make check
> >>>>>>> Running check examples to verify correct installation
> >>>>>>> Using PETSC_DIR=/ccs/home/jczhang/petsc and
> >>>>>>> PETSC_ARCH=arch-spock-cray-kokkos-dbg
> >>>>>>> C/C++ example src/snes/tutorials/ex19 run successfully with 1 MPI
> >>>>>>> process
> >>>>>>> C/C++ example src/snes/tutorials/ex19 run successfully with 2 MPI
> >>>>>>> processes
> >>>>>>> C/C++ example src/snes/tutorials/ex3k run successfully with
> >>>>>>> kokkos-kernels
> >>>>>>> Fortran example src/snes/tutorials/ex5f run successfully with 1 MPI
> >>>>>>> process
> >>>>>>>
> >>>>>>> Completed test examples
> >>>>>>>
> >>>>>>>
> >>>>>>> --Junchao Zhang
> >>>>>>>
> >>>>>>>
> >>>>>>> On Fri, Jul 16, 2021 at 6:04 PM Mark Adams <mfadams at lbl.gov> wrote:
> >>>>>>>
> >>>>>>>> And I find that this error, on non-Kokkos C tests, is fixed by
> >>>>>>>> turning the fortran bindings off:
> >>>>>>>>
> >>>>>>>> ld.lld: error:
> >>>>>>>> /gpfs/alpine/phy122/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/lib/libpetsc.so:
> >>>>>>>> undefined reference to .omp_offloading.img_start.cray_amdgcn-amd-amdhsa
> >>>>>>>> [--no-allow-shlib-undefined]
> >>>>>>>> ld.lld: error:
> >>>>>>>> /gpfs/alpine/phy122/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/lib/libpetsc.so:
> >>>>>>>> undefined reference to .omp_offloading.img_size.cray_amdgcn-amd-amdhsa
> >>>>>>>> [--no-allow-shlib-undefined]
> >>>>>>>> ld.lld: error:
> >>>>>>>> /gpfs/alpine/phy122/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/lib/libpetsc.so:
> >>>>>>>> undefined reference to .omp_offloading.img_cache.cray_amdgcn-amd-amdhsa
> >>>>>>>> [--no-allow-shlib-undefined]
> >>>>>>>>
> >>>>>>>> On Fri, Jul 16, 2021 at 3:53 PM Mark Adams <mfadams at lbl.gov> wrote:
> >>>>>>>>
> >>>>>>>>> Not complex. THis has some overlap with my problem w/o Kokkos.
> >>>>>>>>>
> >>>>>>>>> On Fri, Jul 16, 2021 at 12:54 PM Junchao Zhang <
> >>>>>>>>> junchao.zhang at gmail.com> wrote:
> >>>>>>>>>
> >>>>>>>>>> Do you use complex? post your configure.log.
> >>>>>>>>>>
> >>>>>>>>>> --Junchao Zhang
> >>>>>>>>>>
> >>>>>>>>>>
> >>>>>>>>>> On Fri, Jul 16, 2021 at 9:47 AM Mark Adams <mfadams at lbl.gov>
> >>>>>>>>>> wrote:
> >>>>>>>>>>
> >>>>>>>>>>> The simple Kokkos example is failing for me on Spock.
> >>>>>>>>>>> Any ideas?
> >>>>>>>>>>> Thanks,
> >>>>>>>>>>>
> >>>>>>>>>>> 10:44 main *=
> >>>>>>>>>>> /gpfs/alpine/csc314/scratch/adams/petsc/src/snes/tutorials$ make
> >>>>>>>>>>> PETSC_DIR=/gpfs/alpine/csc314/scratch/adams/petsc
> >>>>>>>>>>> PETSC_ARCH=arch-spock-opt-cray-kokkos ex3k
> >>>>>>>>>>> MPICH_CXX="hipcc" OMPI_CXX="hipcc" CC
> >>>>>>>>>>> -L/sw/spock/spack-envs/views/rocm-4.1.0/lib -lhsa-runtime64
> >>>>>>>>>>> -L/sw/spock/spack-envs/views/rocm-4.1.0/lib -lamdhip64 -lhsa-runtime64
> >>>>>>>>>>> -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas
> >>>>>>>>>>> -fstack-protector -fvisibility=hidden -g -O2 -fPIC -Wall -Wwrite-strings
> >>>>>>>>>>> -Wno-strict-aliasing -Wno-unknown-pragmas -fvisibility=hidden -g -O3
> >>>>>>>>>>> -std=c++14 -I/gpfs/alpine/csc314/scratch/adams/petsc/include
> >>>>>>>>>>> -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-opt-cray-kokkos/include
> >>>>>>>>>>> -I/gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/include
> >>>>>>>>>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include
> >>>>>>>>>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include ex3k.kokkos.cxx
> >>>>>>>>>>> -Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-opt-cray-kokkos/lib
> >>>>>>>>>>> -L/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-opt-cray-kokkos/lib
> >>>>>>>>>>> -Wl,-rpath,/gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/lib
> >>>>>>>>>>> -L/gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/lib
> >>>>>>>>>>> -Wl,-rpath,/sw/spock/spack-envs/views/rocm-4.1.0/lib
> >>>>>>>>>>> -L/sw/spock/spack-envs/views/rocm-4.1.0/lib
> >>>>>>>>>>> -Wl,-rpath,/opt/gcc/8.1.0/snos/lib64 -L/opt/gcc/8.1.0/snos/lib64
> >>>>>>>>>>> -Wl,-rpath,/opt/cray/pe/libsci/21.04.1.1/CRAY/9.0/x86_64/lib
> >>>>>>>>>>> -L/opt/cray/pe/libsci/21.04.1.1/CRAY/9.0/x86_64/lib
> >>>>>>>>>>> -Wl,-rpath,/opt/cray/pe/mpich/8.1.4/ofi/cray/9.1/lib
> >>>>>>>>>>> -L/opt/cray/pe/mpich/8.1.4/ofi/cray/9.1/lib
> >>>>>>>>>>> -Wl,-rpath,/opt/cray/pe/mpich/8.1.4/gtl/lib
> >>>>>>>>>>> -L/opt/cray/pe/mpich/8.1.4/gtl/lib -Wl,-rpath,/opt/cray/pe/pmi/6.0.10/lib
> >>>>>>>>>>> -L/opt/cray/pe/pmi/6.0.10/lib -Wl,-rpath,/opt/cray/pe/dsmml/0.1.4/dsmml/lib
> >>>>>>>>>>> -L/opt/cray/pe/dsmml/0.1.4/dsmml/lib
> >>>>>>>>>>> -Wl,-rpath,/opt/cray/pe/cce/11.0.4/cce/x86_64/lib
> >>>>>>>>>>> -L/opt/cray/pe/cce/11.0.4/cce/x86_64/lib
> >>>>>>>>>>> -Wl,-rpath,/opt/cray/xpmem/2.2.40-2.1_2.7__g3cf3325.shasta/lib64
> >>>>>>>>>>> -L/opt/cray/xpmem/2.2.40-2.1_2.7__g3cf3325.shasta/lib64
> >>>>>>>>>>> -Wl,-rpath,/opt/cray/pe/cce/11.0.4/cce-clang/x86_64/lib/clang/11.0.0/lib/linux
> >>>>>>>>>>> -L/opt/cray/pe/cce/11.0.4/cce-clang/x86_64/lib/clang/11.0.0/lib/linux
> >>>>>>>>>>> -Wl,-rpath,/opt/gcc/8.1.0/snos/lib/gcc/x86_64-suse-linux/8.1.0
> >>>>>>>>>>> -L/opt/gcc/8.1.0/snos/lib/gcc/x86_64-suse-linux/8.1.0
> >>>>>>>>>>> -Wl,-rpath,/opt/cray/pe/cce/11.0.4/binutils/x86_64/x86_64-pc-linux-gnu/..//x86_64-unknown-linux-gnu/lib
> >>>>>>>>>>> -L/opt/cray/pe/cce/11.0.4/binutils/x86_64/x86_64-pc-linux-gnu/..//x86_64-unknown-linux-gnu/lib
> >>>>>>>>>>> -lpetsc -lkokkoskernels -lkokkoscontainers -lkokkoscore -lhipsparse
> >>>>>>>>>>> -lhipblas -lrocsparse -lrocsolver -lrocblas -lamdhip64 -lhsa-runtime64
> >>>>>>>>>>> -lstdc++ -ldl -lpmi -lsci_cray_mpi -lsci_cray -lmpifort_cray -lmpi_cray
> >>>>>>>>>>> -lmpi_gtl_hsa -lxpmem -ldsmml -lpgas-shmem -lquadmath -lcrayacc_amdgpu
> >>>>>>>>>>> -lopenacc -lmodules -lfi -lcraymath -lf -lu -lcsup -lgfortran -lpthread
> >>>>>>>>>>> -lgcc_eh -lm -lclang_rt.craypgo-x86_64 -lclang_rt.builtins-x86_64
> >>>>>>>>>>> -lquadmath -lstdc++ -ldl -o ex3k
> >>>>>>>>>>> In file included from ex3k.kokkos.cxx:3:
> >>>>>>>>>>> In file included from
> >>>>>>>>>>> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscdmda_kokkos.hpp:4:
> >>>>>>>>>>> In file included from
> >>>>>>>>>>> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscvec_kokkos.hpp:14:
> >>>>>>>>>>> In file included from
> >>>>>>>>>>> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscvec.h:9:
> >>>>>>>>>>> In file included from
> >>>>>>>>>>> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscsys.h:42:
> >>>>>>>>>>> In file included from
> >>>>>>>>>>> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscsystypes.h:255:
> >>>>>>>>>>> In file included from
> >>>>>>>>>>> /gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/include/Kokkos_Complex.hpp:47:
> >>>>>>>>>>> In file included from
> >>>>>>>>>>> /gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/include/Kokkos_Atomic.hpp:212:
> >>>>>>>>>>> /gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/include/impl/Kokkos_Atomic_Exchange.hpp:259:11:
> >>>>>>>>>>> error: no member named 'lock_address_host_space' in namespace
> >>>>>>>>>>> 'Kokkos::Impl::Kokkos::Impl'; did you mean simply 'lock_address_host_space'?
> >>>>>>>>>>> while (!Impl::lock_address_host_space((void*)dest))
> >>>>>>>>>>> ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> >>>>>>>>>>> lock_address_host_space
> >>>>>>>>>>> /gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/include/Kokkos_HostSpace.hpp:83:6:
> >>>>>>>>>>> note: 'lock_address_host_space' declared here
> >>>>>>>>>>> bool lock_address_host_space(void* ptr);
> >>>>>>>>>>> ^
> >>>>>>>>>>> In file included from ex3k.kokkos.cxx:3:
> >>>>>>>>>>> In file included from
> >>>>>>>>>>> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscdmda_kokkos.hpp:4:
> >>>>>>>>>>> In file included from
> >>>>>>>>>>> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscvec_kokkos.hpp:14:
> >>>>>>>>>>> In file included from
> >>>>>>>>>>> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscvec.h:9:
> >>>>>>>>>>> In file included from
> >>>>>>>>>>> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscsys.h:42:
> >>>>>>>>>>> In file included from
> >>>>>>>>>>> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscsystypes.h:255:
> >>>>>>>>>>> In file included from
> >>>>>>>>>>> /gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/include/Kokkos_Complex.hpp:47:
> >>>>>>>>>>> In file included from
> >>>>>>>>>>> /gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/include/Kokkos_Atomic.hpp:212:
> >>>>>>>>>>> /gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/include/impl/Kokkos_Atomic_Exchange.hpp:261:3:
> >>>>>>>>>>> error: no member named 'memory_fence' in namespace 'Kokkos::Impl::Kokkos';
> >>>>>>>>>>> did you mean simply 'memory_fence'?
> >>>>>>>>>>> Kokkos::memory_fence();
> >>>>>>>>>>> ^~~~~~~~~~~~~~~~~~~~
> >>>>>>>>>>> memory_fence
> >>>>>>>>>>> /gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/include/impl/Kokkos_Memory_Fence.hpp:53:6:
> >>>>>>>>>>> note: 'memory_fence' declared here
> >>>>>>>>>>> void memory_fence() {
> >>>>>>>>>>> ^
> >>>>>>>>>>> In file included from ex3k.kokkos.cxx:3:
> >>>>>>>>>>> In file included from
> >>>>>>>>>>> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscdmda_kokkos.hpp:4:
> >>>>>>>>>>> In file included from
> >>>>>>>>>>> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscvec_kokkos.hpp:14:
> >>>>>>>>>>> In file included from
> >>>>>>>>>>> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscvec.h:9:
> >>>>>>>>>>> In file included from
> >>>>>>>>>>> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscsys.h:42:
> >>>>>>>>>>> In file included from
> >>>>>>>>>>> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscsystypes.h:255:
> >>>>>>>>>>> In file included from
> >>>>>>>>>>> /gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/include/Kokkos_Complex.hpp:47:
> >>>>>>>>>>> In file included from
> >>>>>>>>>>> /gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/include/Kokkos_Atomic.hpp:212:
> >>>>>>>>>>> /gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/include/impl/Kokkos_Atomic_Exchange.hpp:277:3:
> >>>>>>>>>>> error: no member named 'memory_fence' in namespace 'Kokkos::Impl::Kokkos';
> >>>>>>>>>>> did you mean simply 'memory_fence'?
> >>>>>>>>>>> Kokkos::memory_fence();
> >>>>>>>>>>> ^~~~~~~~~~~~~~~~~~~~
> >>>>>>>>>>> memory_fence
> >>>>>>>>>>> /gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/include/impl/Kokkos_Memory_Fence.hpp:53:6:
> >>>>>>>>>>> note: 'memory_fence' declared here
> >>>>>>>>>>> void memory_fence() {
> >>>>>>>>>>> ^
> >>>>>>>>>>>
> >>>>>>>>>>
--
Scott Kruger
Tech-X Corporation kruger at txcorp.com
5621 Arapahoe Ave, Suite A Phone: (720) 466-3196
Boulder, CO 80303 Fax: (303) 448-7756
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