[petsc-dev] Error on Fugaku
Mark Adams
mfadams at lbl.gov
Fri Apr 16 06:22:47 CDT 2021
Kokkos-Serial is working on Landau ex2, but I get this error with OMP.
gmake[2]: *** [src/CMakeFiles/kokkoskernels.dir/build.make:1040:
src/CMakeFiles/kokkoskernels.dir/impl/generated_specializations_cpp/spmv/Sparse_spmv_mv_struct_eti_DOUBLE_ORDINAL_INT_OFFSET_INT_LAYOUTLEFT_EXECSPACE_SERIAL_MEMSPACE_HOSTSPACE.cpp.o]
Error 9
Good old Error 9.
The Kokkos people (Trott) have a Fujitsu box that they seem willing to dive
in. I will run this by them.
On Thu, Apr 15, 2021 at 3:11 PM Satish Balay <balay at mcs.anl.gov> wrote:
> BTW:
>
> >>>>
> login6$ mpifccpx -fopenmp -v sizeof.c
> fccpx: Fujitsu C/C++ Compiler 4.5.0 tcsds-1.2.31
> simulating gcc version 6.1
> /opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib/ccpcompx --preinclude
> /opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib/fcc.pre --gcc -Dunix -Dlinux
> -D__FUJITSU -D__FCC_major__=4 -D__FCC_minor__=5 -D__FCC_patchlevel__=0
> -D__FCC_version__="4.5.0" -D__aarch64__ -D__unix -D_OPENMP=201107
> -D__fcc_version__=0x800 -D__fcc_version=800 -D__USER_LABEL_PREFIX__=
> -D__ARM_ARCH=8 -D__ARM_FEATURE_SVE -D__FP_FAST_FMA -D__ELF__ -D__unix__
> -D__linux__ -D__linux -Asystem(unix) -D__LIBC_6B -D__LP64__ -D_LP64 --K=omp
> -I/opt/FJSVxtclanga/.common/MELI024/include/mpi/fujitsu -D_REENTRANT
> --K=noocl -D_REENTRANT -D__MT__ --zmode=64
> --sys_include=/opt/FJSVxtclanga/tcsds-1.2.31/bin/../include
> --sys_include=/opt/FJSVxos/devkit/aarch64/rfs/usr/include sizeof.c --
> -ncmdname=fccpx -zcfc=target_sve -Kopenmp -V -Kthreadsafe -Klargepage -otmp
> /home/ra010009/a04201/asmHUx9OT.s
> ccpcompx: Fujitsu C/C++ Compiler 4.5.0 (Mar 4 2021 13:29:06)
> /opt/FJSVxtclanga/tcsds-1.2.31/bin/../bin/checklogpx -v -zlangC MPI:V4.5.0
> -fopenmp -v /home/ra010009/a04201/asmHUx9OT.s
> /opt/FJSVxos/devkit/aarch64/bin/aarch64-linux-gnu-as -o
> /home/ra010009/a04201/fccmPXe0C.o -march=armv8.3-a+sve -v
> /home/ra010009/a04201/asmHUx9OT.s
> GNU assembler version 2.30 (aarch64-linux-gnu) using BFD version version
> 2.30-49.el8
> /opt/FJSVxos/devkit/aarch64/bin/aarch64-linux-gnu-ld --build-id
> --sysroot=/opt/FJSVxos/devkit/aarch64/rfs --eh-frame-hdr -m aarch64linux
> -dynamic-linker /lib/ld-linux-aarch64.so.1
> /opt/FJSVxos/devkit/aarch64/rfs/usr/lib64/crt1.o
> /opt/FJSVxos/devkit/aarch64/rfs/usr/lib64/crti.o
> /opt/FJSVxos/devkit/aarch64/lib/gcc/aarch64-linux-gnu/8/crtbegin.o
> -lfjprofmpi -L/opt/FJSVxos/devkit/aarch64/lib/gcc/aarch64-linux-gnu/8 -v
> /home/ra010009/a04201/fccmPXe0C.o -L/opt/FJSVxtclanga/.common/MELI024/lib64
> -lmpi -lfjstring_internal
> -L/opt/FJSVxos/devkit/aarch64/lib/gcc/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/lib/../lib64
> /opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib64/fjcrt0.o
> /opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib64/fjlang08.o
> /opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib64/fjomp.o
> /opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib64/fjhpctag.o
> -L/opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib64 -lfjomphk -lfjomp -lfj90i
> -lfj90fmt_sve -lfj90f -lfjsrcinfo -lfjcrt -lfjompcrt -lfjprofcore
> -lfjprofomp -lmpg -lm -l
> atomic -lpthread -L/opt/FJSVxos/devkit/aarch64/rfs/usr/lib64
> -L/opt/FJSVxos/devkit/aarch64/rfs/opt/FJSVxos/mmm/lib64
> -L/opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib64/nofjobj
> -T/opt/FJSVxos/devkit/aarch64/rfs/opt/FJSVxos/mmm/util/bss-2mb.lds -lm -lrt
> -lpthread -lelf -lz -ldl -lgcc_s -lgcc -lc -lgcc_s -lgcc -lc
> /opt/FJSVxos/devkit/aarch64/lib/gcc/aarch64-linux-gnu/8/crtend.o
> /opt/FJSVxos/devkit/aarch64/rfs/usr/lib64/crtn.o
> GNU ld version 2.30-49.el8
> <<<<
>
> i.e -fopenmp is internally mapped to -Kopenmp
>
> Satish
>
> On Wed, 14 Apr 2021, Mark Adams wrote:
>
> > The compiler:
> >
> > FCC (FCC) 4.5.0 20210304
> >
> > *simulating gcc version 6.1*Copyright FUJITSU LIMITED 2019-2021
> >
> > and
> > -Kopenmp specifies to enable the Specification of OpenMP
> Application
> > Program Interface. The -Knoopenmp option invalidates the -Kopenmp
> > option. -Knoopenmp is set by default.
> >
> > When the -Kopenmp option is specified, -mt is assumed.
> >
> >
> > *The -Kopenmp option is needed if an object program compiled with it
> > exists in the command line as an input file.*
> >
> > I am going to try w/o Kopenmp.
> >
> > On Wed, Apr 14, 2021 at 8:15 PM Satish Balay <balay at mcs.anl.gov> wrote:
> >
> > > I don't understand kokkos build errors.
> > >
> > > For one - kokkos-kernels are taking long to build. And on the back end
> -
> > > I'm getting into time limit [and terminated]
> > >
> >
> > Kokkos take a very long time in configure on Summit.
> >
> > Thanks,
> >
> >
> > >
> > > Trying a build on the front-end - its running - for a long time..
> > >
> > > PID USER PR NI VIRT RES SHR S %CPU %MEM TIME+
> > > COMMAND
> > > 4016901
> > > a04201 20 0 11.0g 10.7g 13876 R 99.3 11.6 66:22.35 ccpcompx
> > >
> > >
> > > The above compile process has been running for more than an hour. Ok -
> its
> > > finally done.
> > >
> > > When I enable openmp - kokkos cmake completes - but I get errors at
> build
> > > time [BTW: I don't understand difference between -fopenmp and
> -Kopenmp]
> > >
> > > login6$
> > >
> ../petsc.save/arch-linux2-c-opt/lib/petsc/conf/reconfigure-arch-linux2-c-opt.py
> > > --with-p4est-dir=$HOME/p4est-install
> --with-zlib-dir=$HOME/p4est-install
> > > -download-kokkos --download-kokkos-kernelsx
> > > --download-kokkos-commit=origin/develop
> > > --download-kokkos-kernels-commit=origin/develop --download-cmake=
> > >
> https://github.com/Kitware/CMake/releases/download/v3.20.1/cmake-3.20.1.tar.gz
> > > '--download-kokkos-cmake-arguments=-DBUILD_TESTING=OFF
> > > -DKokkos_ENABLE_LIBDL=OFF -DKokkos_ENABLE_AGGRESSIVE_VECTORIZATION=ON
> > > -DKokkos_ENABLE_OPENMP=ON' --ignoreLinkOutput=1 --with-openmp=1
> > >
> > >
> > >
> /a04201/petsc.x/arch-linux2-c-opt/externalpackages/git.kokkos/petsc-build/core/src
> > >
> -I/vol0004/ra010009/a04201/petsc.x/arch-linux2-c-opt/externalpackages/git.kokkos/core/src
> > >
> -I/vol0004/ra010009/a04201/petsc.x/arch-linux2-c-opt/externalpackages/git.kokkos/petsc-build
> > > -O -fopenmp -fPIC -fopenmp -O -fopenmp -fPIC -fopenmp -fopenmp
> -std=c++14
> > > -o CMakeFiles/kokkoscore.dir/OpenMP/Kokkos_OpenMP_Task.cpp.o -c
> > >
> /vol0004/ra010009/a04201/petsc.x/arch-linux2-c-opt/externalpackages/git.kokkos/core/src/OpenMP/Kokkos_OpenMP_Task.cpp
> > > gmake[2]: Leaving directory
> > >
> '/vol0004/ra010009/a04201/petsc.x/arch-linux2-c-opt/externalpackages/git.kokkos/petsc-build'
> > > gmake[1]: Leaving directory
> > >
> '/vol0004/ra010009/a04201/petsc.x/arch-linux2-c-opt/externalpackages/git.kokkos/petsc-build'/home/ra010009/a04201/asmqkagl0.s:
> > > Assembler messages:
> > > /home/ra010009/a04201/asmqkagl0.s:20333: Error: symbol `.LEHB41' is
> > > already defined
> > > /home/ra010009/a04201/asmqkagl0.s:21334: Error: symbol `.LEHB41' is
> > > already defined
> > > gmake[2]: *** [core/src/CMakeFiles/kokkoscore.dir/build.make:312:
> > > core/src/CMakeFiles/kokkoscore.dir/OpenMP/Kokkos_OpenMP_Exec.cpp.o]
> Error 1
> > >
> > > Note: I have a successful configure run with
> p4est+kokkos+kokkos-kernels,
> > > without-openmp
> > > [for this - I had to build p4est on the back-end, then switch over to
> > > front-end - and build the reset of the packages]
> > >
> > > Now I'm stuck at compiling petsc sources -
> > > src/vec/is/sf/impls/basic/kokkos/sfkok.kokkos.cxx
> > >
> > > PID USER PR NI VIRT RES SHR S %CPU %MEM TIME+
> > > COMMAND
> > > 56491
> > > a04201 20 0 4944176 4.5g 11216 R 98.4 4.9 12:45.52 ccpcompx
> > >
> > >
> > >
> > > Satish
> > >
> > > On Wed, 14 Apr 2021, Mark Adams wrote:
> > >
> > > > PETSc seems to be skipping the compiler that it should use:
> > > >
> > > > -- Check for working CXX compiler:
> > > > /opt/FJSVxtclanga/tcsds-1.2.31/bin/mpiFCC - skipped
> > > >
> > > > I see -fopenmp was added. This might be wrong. I use -Kopenmp.
> > > >
> > > > --help says:
> > > >
> > > > -fopenmp
> > > >
> > > > The -fopenmp option specifies to enable Specification of
> OpenMP
> > > > Appli-
> > > > cation Program Interface.
> > > >
> > > > When the -fopenmp option is specified, -mt is set.
> > > >
> > > > The -fopenmp option is needed if an object program compiled
> with
> > > the
> > > > -fopenmp option exists in the command line as input files.
> > > >
> > > > Any ideas?
> > > >
> > > >
> > > > On Wed, Apr 14, 2021 at 5:17 PM Satish Balay <balay at mcs.anl.gov>
> wrote:
> > > >
> > > > > The following is working for me on the compute node [its completed
> > > kokkos
> > > > > (core) build - and is now building kokkos-kernels
> > > > >
> > > > > ~/petsc.save/arch-arm/lib/petsc/conf/reconfigure-arch-arm.py
> > > > > --download-p4est --download-zlib --download-kokkos
> > > > > --download-kokkos-kernels --download-kokkos-commit=origin/develop
> > > > > --download-cmake=
> > > > >
> > >
> https://github.com/Kitware/CMake/releases/download/v3.20.1/cmake-3.20.1.tar.gz
> > > > >
> > > > > -DKokkos_ENABLE_OPENMP=ON give me some issue - so I didn't try any
> of
> > > the
> > > > > additional options..
> > > > >
> > > > > Satish
> > > > >
> > > > > On Wed, 14 Apr 2021, Mark Adams wrote:
> > > > >
> > > > > > Satish, I get this error.
> > > > > >
> > > > > > I wonder if this syntax is wrong:
> > > > > >
> > > > > > '--download-kokkos-cmake-arguments=-DCMAKE_BUILD_TYPE=Release
> > > > > > -DBUILD_TESTING=OFF -DKokkos_ENABLE_LIBDL=OFF
> > > -DKokkos_ENABLE_OPENMP=ON
> > > > > > -DKokkos_ENABLE_SERIAL=ON
> > > -DKokkos_ENABLE_AGGRESSIVE_VECTORIZATION=ON',
> > > > > >
> > > > > >
> > > > > >
> > > > >
> > >
> =============================================================================================
> > > > > > Configuring KOKKOS with cmake;
> this may
> > > > > take
> > > > > > several minutes
> > > > > >
> > > > > >
> > > > >
> > >
> =============================================================================================
> > > > > >
> > > > > > Executing: /usr/bin/cmake ..
> > > > > > -DCMAKE_INSTALL_PREFIX=/home/ra010009/a04199/petsc/arch-arm
> > > > > >
> > > > >
> > >
> -DCMAKE_INSTALL_NAME_DIR:STRING="/home/ra010009/a04199/petsc/arch-arm/lib"
> > > > > > -DCMAKE_INSTALL_LIBDIR:STRING="lib" -DCMAKE_VERBOSE_MAKEFILE=1
> > > > > > -DCMAKE_BUILD_TYPE=Release -DCMAKE_C_COMPILER="mpifcc"
> > > > > > -DMPI_C_COMPILER="mpifcc" -DCMAKE_AR=/usr/bin/ar
> > > > > > -DCMAKE_RANLIB=/usr/bin/ranlib -DCMAKE_C_FLAGS:STRING="-fPIC
> > > > > -Kfast,openmp
> > > > > > -fopenmp" -DCMAKE_C_FLAGS_DEBUG:STRING="-fPIC -Kfast,openmp
> -fopenmp"
> > > > > > -DCMAKE_C_FLAGS_RELEASE:STRING="-fPIC -Kfast,openmp -fopenmp"
> > > > > > -DCMAKE_CXX_COMPILER="mpiFCC" -DMPI_CXX_COMPILER="mpiFCC"
> > > > > > -DCMAKE_CXX_FLAGS:STRING="-Kfast,openmp -fopenmp -fPIC -fopenmp"
> > > > > > -DCMAKE_CXX_FLAGS_DEBUG:STRING="-Kfast,openmp -fopenmp -fPIC
> > > -fopenmp"
> > > > > > -DCMAKE_CXX_FLAGS_RELEASE:STRING="-Kfast,openmp -fopenmp -fPIC
> > > -fopenmp"
> > > > > > -DCMAKE_Fortran_COMPILER="mpifrt" -DMPI_Fortran_COMPILER="mpifrt"
> > > > > > -DCMAKE_Fortran_FLAGS:STRING="-fPIC -O -fopenmp"
> > > > > > -DCMAKE_Fortran_FLAGS_DEBUG:STRING="-fPIC -O -fopenmp"
> > > > > > -DCMAKE_Fortran_FLAGS_RELEASE:STRING="-fPIC -O -fopenmp"
> > > > > > -DCMAKE_EXE_LINKER_FLAGS:STRING=" -fopenmp"
> > > -DBUILD_SHARED_LIBS:BOOL=ON
> > > > > > -DUSE_XSDK_DEFAULTS=YES -DXSDK_ENABLE_DEBUG=NO
> > > > > > -DCMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=ON
> > > > > > -DCMAKE_BUILD_WITH_INSTALL_RPATH:BOOL=ON -DKokkos_ENABLE_MPI=ON
> > > > > > -DKokkos_ENABLE_SERIAL=ON -DKokkos_ENABLE_OPENMP=ON
> > > > > > -DCMAKE_CXX_STANDARD="14" -DCMAKE_BUILD_TYPE=Release
> > > -DBUILD_TESTING=OFF
> > > > > > -DKokkos_ENABLE_LIBDL=OFF -DKokkos_ENABLE_OPENMP=ON
> > > > > > -DKokkos_ENABLE_SERIAL=ON
> -DKokkos_ENABLE_AGGRESSIVE_VECTORIZATION=ON
> > > > > > stdout:
> > > > > > -- Setting default Kokkos CXX standard to 14
> > > > > > -- The CXX compiler identification is Fujitsu
> > > > > > -- Check for working CXX compiler:
> > > > > /opt/FJSVxtclanga/tcsds-1.2.31/bin/mpiFCC
> > > > > > -- Check for working CXX compiler:
> > > > > > /opt/FJSVxtclanga/tcsds-1.2.31/bin/mpiFCC -- works
> > > > > > -- Detecting CXX compiler ABI info
> > > > > > -- Detecting CXX compiler ABI info - done
> > > > > > -- The project name is: Kokkos
> > > > > > -- Configuring incomplete, errors occurred!
> > > > > > See also
> > > > > >
> > > > >
> > >
> "/vol0004/ra010009/a04199/petsc/arch-arm/externalpackages/git.kokkos/petsc-build/CMakeFiles/CMakeOutput.log".
> > > > > > Error configuring KOKKOS with cmake Could not
> > > execute
> > > > > > "['/usr/bin/cmake ..
> > > > > > -DCMAKE_INSTALL_PREFIX=/home/ra010009/a04199/petsc/arch-arm
> > > > > >
> > > > >
> > >
> -DCMAKE_INSTALL_NAME_DIR:STRING="/home/ra010009/a04199/petsc/arch-arm/lib"
> > > > > > -DCMAKE_INSTALL_LIBDIR:STRING="lib" -DCMAKE_VERBOSE_MAKEFILE=1
> > > > > > -DCMAKE_BUILD_TYPE=Release -DCMAKE_C_COMPILER="mpifcc"
> > > > > > -DMPI_C_COMPILER="mpifcc" -DCMAKE_AR=/usr/bin/ar
> > > > > > -DCMAKE_RANLIB=/usr/bin/ranlib -DCMAKE_C_FLAGS:STRING="-fPIC
> > > > > -Kfast,openmp
> > > > > > -fopenmp" -DCMAKE_C_FLAGS_DEBUG:STRING="-fPIC -Kfast,openmp
> -fopenmp"
> > > > > > -DCMAKE_C_FLAGS_RELEASE:STRING="-fPIC -Kfast,openmp -fopenmp"
> > > > > > -DCMAKE_CXX_COMPILER="mpiFCC" -DMPI_CXX_COMPILER="mpiFCC"
> > > > > > -DCMAKE_CXX_FLAGS:STRING="-Kfast,openmp -fopenmp -fPIC -fopenmp"
> > > > > > -DCMAKE_CXX_FLAGS_DEBUG:STRING="-Kfast,openmp -fopenmp -fPIC
> > > -fopenmp"
> > > > > > -DCMAKE_CXX_FLAGS_RELEASE:STRING="-Kfast,openmp -fopenmp -fPIC
> > > -fopenmp"
> > > > > > -DCMAKE_Fortran_COMPILER="mpifrt" -DMPI_Fortran_COMPILER="mpifrt"
> > > > > > -DCMAKE_Fortran_FLAGS:STRING="-fPIC -O -fopenmp"
> > > > > > -DCMAKE_Fortran_FLAGS_DEBUG:STRING="-fPIC -O -fopenmp"
> > > > > > -DCMAKE_Fortran_FLAGS_RELEASE:STRING="-fPIC -O -fopenmp"
> > > > > > -DCMAKE_EXE_LINKER_FLAGS:STRING=" -fopenmp"
> > > -DBUILD_SHARED_LIBS:BOOL=ON
> > > > > > -DUSE_XSDK_DEFAULTS=YES -DXSDK_ENABLE_DEBUG=NO
> > > > > > -DCMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=ON
> > > > > > -DCMAKE_BUILD_WITH_INSTALL_RPATH:BOOL=ON -DKokkos_ENABLE_MPI=ON
> > > > > > -DKokkos_ENABLE_SERIAL=ON -DKokkos_ENABLE_OPENMP=ON
> > > > > > -DCMAKE_CXX_STANDARD="14" -DCMAKE_BUILD_TYPE=Release
> > > -DBUILD_TESTING=OFF
> > > > > > -DKokkos_ENABLE_LIBDL=OFF -DKokkos_ENABLE_OPENMP=ON
> > > > > > -DKokkos_ENABLE_SERIAL=ON
> > > -DKokkos_ENABLE_AGGRESSIVE_VECTORIZATION=ON']":
> > > > > > -- Setting default Kokkos CXX standard to 14
> > > > > > -- The CXX compiler identification is Fujitsu
> > > > > > -- Check for working CXX compiler:
> > > > > /opt/FJSVxtclanga/tcsds-1.2.31/bin/mpiFCC
> > > > > > -- Check for working CXX compiler:
> > > > > > /opt/FJSVxtclanga/tcsds-1.2.31/bin/mpiFCC -- works
> > > > > > -- Detecting CXX compiler ABI info
> > > > > > -- Detecting CXX compiler ABI info - done
> > > > > > -- The project name is: Kokkos
> > > > > > -- Configuring incomplete, errors occurred!
> > > > > > See also
> > > > > >
> > > > >
> > >
> "/vol0004/ra010009/a04199/petsc/arch-arm/externalpackages/git.kokkos/petsc-build/CMakeFiles/CMakeOutput.log".CMake
> > > > > > Error at cmake/kokkos_compiler_id.cmake:129 (STRING):
> > > > > >
> > > > > > * STRING sub-command REPLACE requires at least four
> arguments.*Call
> > > > > Stack
> > > > > > (most recent call first):
> > > > > > cmake/kokkos_tribits.cmake:174 (INCLUDE)
> > > > > > CMakeLists.txt:166 (KOKKOS_SETUP_BUILD_ENVIRONMENT)
> > > > > >
> > > > > > On Wed, Apr 14, 2021 at 3:34 PM Satish Balay <balay at mcs.anl.gov>
> > > wrote:
> > > > > >
> > > > > > > Additional kokkos cmake arguments can be passed in via
> > > > > > > --download-kokkos-cmake-arguments=string option.
> > > > > > >
> > > > > > > Satish
> > > > > > >
> > > > > > > On Wed, 14 Apr 2021, Mark Adams wrote:
> > > > > > >
> > > > > > > > Satish,
> > > > > > > >
> > > > > > > > For the fujitsu compiler OMP is -Kopenmp.
> > > > > > > >
> > > > > > > > Sarat (cc'ed) tells me that he built Kokkos with:
> > > > > > > >
> > > > > > > > cmake -DCMAKE_BUILD_TYPE=Release \
> > > > > > > > -DCMAKE_INSTALL_PREFIX=${KOKKOS_SRC_DIR}/install \
> > > > > > > > -DBUILD_TESTING=OFF \
> > > > > > > > -DKokkos_ENABLE_LIBDL=OFF \
> > > > > > > > -DKokkos_ENABLE_OPENMP=ON \
> > > > > > > > -DKokkos_ENABLE_SERIAL=ON \
> > > > > > > > -DKokkos_ENABLE_AGGRESSIVE_VECTORIZATION=ON \
> > > > > > > > ..
> > > > > > > >
> > > > > > > > How might I make this happen in PETSc?
> > > > > > > >
> > > > > > > > Thanks,
> > > > > > > > Mark
> > > > > > > >
> > > > > > > >
> > > > > > > > On Wed, Apr 14, 2021 at 2:44 PM Satish Balay <
> balay at mcs.anl.gov>
> > > > > wrote:
> > > > > > > >
> > > > > > > > > On Wed, 14 Apr 2021, Mark Adams wrote:
> > > > > > > > >
> > > > > > > > > > I have this building now.
> > > > > > > > > > Do you know anything about OpenMP?
> > > > > > > > > > I can add --with-openmp
> > > > > > > > > > That should get Kokkos to be made with OpenMP.
> > > > > > > > > > Should PETSc deal with the compilers correctly?
> > > > > > > > >
> > > > > > > > > Well it tries the following compiler options for openmp.
> > > > > > > > >
> > > > > > > > > oflags = ["-fopenmp", # Gnu
> > > > > > > > > "-qsmp=omp",# IBM XL C/C++
> > > > > > > > > "-h omp", # Cray. Must come after XL
> because XL
> > > > > > > interprets
> > > > > > > > > this option as meaning "-soname omp"
> > > > > > > > > "-mp", # Portland Group
> > > > > > > > > "-Qopenmp", # Intel windows
> > > > > > > > > "-openmp", # Intel
> > > > > > > > > "-xopenmp", # Sun
> > > > > > > > > "+Oopenmp", # HP
> > > > > > > > > "/openmp" # Microsoft Visual Studio
> > > > > > > > > ]
> > > > > > > > >
> > > > > > > > > I don't know what the flag for fugaku compiler is.
> > > > > > > > >
> > > > > > > > > Satish
> > > > > > > > >
> > > > > > > > >
> > > > > > > > > > Thanks,
> > > > > > > > > > Mark
> > > > > > > > > >
> > > > > > > > > > On Wed, Apr 14, 2021 at 1:45 PM Mark Adams <
> mfadams at lbl.gov>
> > > > > wrote:
> > > > > > > > > >
> > > > > > > > > > > Thanks,
> > > > > > > > > > > If you feel inspired you could try Kokkos :||
> > > > > > > > > > > I am in a parking lot waiting for my daughter but can
> try
> > > this
> > > > > > > when I
> > > > > > > > > get
> > > > > > > > > > > home,
> > > > > > > > > > > Thanks again,
> > > > > > > > > > > Mark
> > > > > > > > > > >
> > > > > > > > > > > On Wed, Apr 14, 2021 at 1:33 PM Satish Balay <
> > > > > balay at mcs.anl.gov>
> > > > > > > > > wrote:
> > > > > > > > > > >
> > > > > > > > > > >> I think I allocated a single node - and did the build
> on
> > > it.
> > > > > > > > > > >>
> > > > > > > > > > >> Now I'm getting an error - don't know what changed..
> > > > > > > > > > >>
> > > > > > > > > > >> login6$ pjsub --interact -L "node=1" -L
> > > > > "rscunit=rscunit_ft01" -L
> > > > > > > > > > >> "rscgrp=eap-int" -L "elapse=1:00:00" --sparam
> > > "wait-time=600"
> > > > > > > > > > >> [ERR.] PJM 0059 pjsub rscgrp=eap-int is disabled.
> > > > > > > > > > >>
> > > > > > > > > > >> Ok - the following worked..
> > > > > > > > > > >>
> > > > > > > > > > >> login6$ pjsub --interact -L "node=1" -L
> > > > > "rscunit=rscunit_ft01" -L
> > > > > > > > > > >> "elapse=1:00:00" --sparam "wait-time=600"
> > > > > > > > > > >> [INFO] PJM 0000 pjsub Job 6301572 submitted.
> > > > > > > > > > >> [INFO] PJM 0081 .connected.
> > > > > > > > > > >> [INFO] PJM 0082 pjsub Interactive job 6301572 started.
> > > > > > > > > > >> [a04201 at j31-3110s petsc]$
> > > > > > > > > > >>
> > > > > > > > > > >> Ok - trying this build now.
> > > > > > > > > > >>
> > > > > > > > > > >> [a04201 at j31-3110s petsc]$ cat
> > > > > > > > > > >>
> > > ~/petsc.save/arch-arm/lib/petsc/conf/reconfigure-arch-arm.py
> > > > > > > > > > >> #!/usr/bin/python3
> > > > > > > > > > >> if __name__ == '__main__':
> > > > > > > > > > >> import sys
> > > > > > > > > > >> import os
> > > > > > > > > > >> sys.path.insert(0, os.path.abspath('config'))
> > > > > > > > > > >> import configure
> > > > > > > > > > >> configure_options = [
> > > > > > > > > > >> '--with-blaslapack-lib=-lfjlapack',
> > > > > > > > > > >> '--with-debugging=0',
> > > > > > > > > > >> 'CC=mpifcc',
> > > > > > > > > > >> 'CXX=mpiFCC',
> > > > > > > > > > >> 'FC=mpifrt',
> > > > > > > > > > >> 'PETSC_ARCH=arch-arm',
> > > > > > > > > > >> ]
> > > > > > > > > > >> configure.petsc_configure(configure_options)
> > > > > > > > > > >> [a04201 at j31-3110s petsc]$
> > > > > > > > > > >>
> > > ~/petsc.save/arch-arm/lib/petsc/conf/reconfigure-arch-arm.py
> > > > > > > > > > >> --download-p4est --download-zlib
> > > > > > > > > > >> <snip>
> > > > > > > > > > >> p4est:
> > > > > > > > > > >> Includes:
> > > -I/vol0004/ra010009/a04201/petsc/arch-arm/include
> > > > > > > > > > >> Library:
> > > > > -Wl,-rpath,/vol0004/ra010009/a04201/petsc/arch-arm/lib
> > > > > > > > > > >> -L/vol0004/ra010009/a04201/petsc/arch-arm/lib -lp4est
> -lsc
> > > > > > > > > > >>
> > > > > > > > > > >> Ok - this worked for me.
> > > > > > > > > > >>
> > > > > > > > > > >> Satish
> > > > > > > > > > >>
> > > > > > > > > > >> On Wed, 14 Apr 2021, Mark Adams wrote:
> > > > > > > > > > >>
> > > > > > > > > > >> > Do you recall what nodes you use to build on a
> "compute"
> > > > > node,
> > > > > > > to
> > > > > > > > > avoid
> > > > > > > > > > >> > cross compilation?
> > > > > > > > > > >> >
> > > > > > > > > > >> > On Wed, Apr 14, 2021 at 12:08 PM Satish Balay <
> > > > > > > balay at mcs.anl.gov>
> > > > > > > > > > >> wrote:
> > > > > > > > > > >> >
> > > > > > > > > > >> > > looks like p4est cannot be cross-compiled.
> > > > > > > > > > >> > >
> > > > > > > > > > >> > > Satish
> > > > > > > > > > >> > >
> > > > > > > > > > >> > > On Wed, 14 Apr 2021, Mark Adams wrote:
> > > > > > > > > > >> > >
> > > > > > > > > > >> > > > I get this error with p4est on Fugaku.
> > > > > > > > > > >> > > > It is a Fortran error. Odd.
> > > > > > > > > > >> > > > Mark
> > > > > > > > > > >> > > >
> > > > > > > > > > >> > >
> > > > > > > > > > >> > >
> > > > > > > > > > >> >
> > > > > > > > > > >>
> > > > > > > > > > >>
> > > > > > > > > >
> > > > > > > > >
> > > > > > > > >
> > > > > > > >
> > > > > > >
> > > > > > >
> > > > > >
> > > > >
> > > > >
> > > >
> > >
> > >
> >
>
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